data_3D5W # _entry.id 3D5W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3D5W pdb_00003d5w 10.2210/pdb3d5w/pdb RCSB RCSB047631 ? ? WWPDB D_1000047631 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-08-30 4 'Structure model' 1 3 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site 8 4 'Structure model' pdbx_entry_details 9 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D5W _pdbx_database_status.recvd_initial_deposition_date 2008-05-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3d5u . unspecified PDB 3d5v . unspecified PDB 3d5x . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Elling, R.A.' 1 'Fucini, R.V.' 2 'Romanowski, M.J.' 3 # _citation.id primary _citation.title ;Structures of the wild-type and activated catalytic domains of Brachydanio rerio Polo-like kinase 1 (Plk1): changes in the active-site conformation and interactions with ligands. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 64 _citation.page_first 909 _citation.page_last 918 _citation.year 2008 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18703838 _citation.pdbx_database_id_DOI 10.1107/S0907444908019513 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Elling, R.A.' 1 ? primary 'Fucini, R.V.' 2 ? primary 'Romanowski, M.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Polo-like kinase 1' 36058.949 1 2.7.11.21 ? 'catalytic domain' ? 2 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 1 ? ? ? ? 3 water nat water 18.015 57 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPLGSMSAAIAKPSAKPSAHVDPKSAPLKEIPDVLVDPRTMKRYMRGRFLGKGGFAKCYEITDMDTKEVFAGKVVPKSML LKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEPEARYFMRQTIQGVQYLHN NRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKK(TPO)LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLL VGKPPFETSCLKETYIRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTSGYAPMRLPTSCLTVPPRF S ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSMSAAIAKPSAKPSAHVDPKSAPLKEIPDVLVDPRTMKRYMRGRFLGKGGFAKCYEITDMDTKEVFAGKVVPKSML LKPHQKEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEPEARYFMRQTIQGVQYLHN NRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKP PFETSCLKETYIRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTSGYAPMRLPTSCLTVPPRFS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-DIPHOSPHATE" ADP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MET n 1 7 SER n 1 8 ALA n 1 9 ALA n 1 10 ILE n 1 11 ALA n 1 12 LYS n 1 13 PRO n 1 14 SER n 1 15 ALA n 1 16 LYS n 1 17 PRO n 1 18 SER n 1 19 ALA n 1 20 HIS n 1 21 VAL n 1 22 ASP n 1 23 PRO n 1 24 LYS n 1 25 SER n 1 26 ALA n 1 27 PRO n 1 28 LEU n 1 29 LYS n 1 30 GLU n 1 31 ILE n 1 32 PRO n 1 33 ASP n 1 34 VAL n 1 35 LEU n 1 36 VAL n 1 37 ASP n 1 38 PRO n 1 39 ARG n 1 40 THR n 1 41 MET n 1 42 LYS n 1 43 ARG n 1 44 TYR n 1 45 MET n 1 46 ARG n 1 47 GLY n 1 48 ARG n 1 49 PHE n 1 50 LEU n 1 51 GLY n 1 52 LYS n 1 53 GLY n 1 54 GLY n 1 55 PHE n 1 56 ALA n 1 57 LYS n 1 58 CYS n 1 59 TYR n 1 60 GLU n 1 61 ILE n 1 62 THR n 1 63 ASP n 1 64 MET n 1 65 ASP n 1 66 THR n 1 67 LYS n 1 68 GLU n 1 69 VAL n 1 70 PHE n 1 71 ALA n 1 72 GLY n 1 73 LYS n 1 74 VAL n 1 75 VAL n 1 76 PRO n 1 77 LYS n 1 78 SER n 1 79 MET n 1 80 LEU n 1 81 LEU n 1 82 LYS n 1 83 PRO n 1 84 HIS n 1 85 GLN n 1 86 LYS n 1 87 GLU n 1 88 LYS n 1 89 MET n 1 90 SER n 1 91 THR n 1 92 GLU n 1 93 ILE n 1 94 ALA n 1 95 ILE n 1 96 HIS n 1 97 LYS n 1 98 SER n 1 99 LEU n 1 100 ASP n 1 101 ASN n 1 102 PRO n 1 103 HIS n 1 104 VAL n 1 105 VAL n 1 106 GLY n 1 107 PHE n 1 108 HIS n 1 109 GLY n 1 110 PHE n 1 111 PHE n 1 112 GLU n 1 113 ASP n 1 114 ASP n 1 115 ASP n 1 116 PHE n 1 117 VAL n 1 118 TYR n 1 119 VAL n 1 120 VAL n 1 121 LEU n 1 122 GLU n 1 123 ILE n 1 124 CYS n 1 125 ARG n 1 126 ARG n 1 127 ARG n 1 128 SER n 1 129 LEU n 1 130 LEU n 1 131 GLU n 1 132 LEU n 1 133 HIS n 1 134 LYS n 1 135 ARG n 1 136 ARG n 1 137 LYS n 1 138 ALA n 1 139 VAL n 1 140 THR n 1 141 GLU n 1 142 PRO n 1 143 GLU n 1 144 ALA n 1 145 ARG n 1 146 TYR n 1 147 PHE n 1 148 MET n 1 149 ARG n 1 150 GLN n 1 151 THR n 1 152 ILE n 1 153 GLN n 1 154 GLY n 1 155 VAL n 1 156 GLN n 1 157 TYR n 1 158 LEU n 1 159 HIS n 1 160 ASN n 1 161 ASN n 1 162 ARG n 1 163 VAL n 1 164 ILE n 1 165 HIS n 1 166 ARG n 1 167 ASP n 1 168 LEU n 1 169 LYS n 1 170 LEU n 1 171 GLY n 1 172 ASN n 1 173 LEU n 1 174 PHE n 1 175 LEU n 1 176 ASN n 1 177 ASP n 1 178 ASP n 1 179 MET n 1 180 ASP n 1 181 VAL n 1 182 LYS n 1 183 ILE n 1 184 GLY n 1 185 ASP n 1 186 PHE n 1 187 GLY n 1 188 LEU n 1 189 ALA n 1 190 THR n 1 191 LYS n 1 192 ILE n 1 193 GLU n 1 194 PHE n 1 195 ASP n 1 196 GLY n 1 197 GLU n 1 198 ARG n 1 199 LYS n 1 200 LYS n 1 201 TPO n 1 202 LEU n 1 203 CYS n 1 204 GLY n 1 205 THR n 1 206 PRO n 1 207 ASN n 1 208 TYR n 1 209 ILE n 1 210 ALA n 1 211 PRO n 1 212 GLU n 1 213 VAL n 1 214 LEU n 1 215 CYS n 1 216 LYS n 1 217 LYS n 1 218 GLY n 1 219 HIS n 1 220 SER n 1 221 PHE n 1 222 GLU n 1 223 VAL n 1 224 ASP n 1 225 ILE n 1 226 TRP n 1 227 SER n 1 228 LEU n 1 229 GLY n 1 230 CYS n 1 231 ILE n 1 232 LEU n 1 233 TYR n 1 234 THR n 1 235 LEU n 1 236 LEU n 1 237 VAL n 1 238 GLY n 1 239 LYS n 1 240 PRO n 1 241 PRO n 1 242 PHE n 1 243 GLU n 1 244 THR n 1 245 SER n 1 246 CYS n 1 247 LEU n 1 248 LYS n 1 249 GLU n 1 250 THR n 1 251 TYR n 1 252 ILE n 1 253 ARG n 1 254 ILE n 1 255 LYS n 1 256 LYS n 1 257 ASN n 1 258 GLU n 1 259 TYR n 1 260 SER n 1 261 VAL n 1 262 PRO n 1 263 ARG n 1 264 HIS n 1 265 ILE n 1 266 ASN n 1 267 PRO n 1 268 VAL n 1 269 ALA n 1 270 SER n 1 271 ALA n 1 272 LEU n 1 273 ILE n 1 274 ARG n 1 275 ARG n 1 276 MET n 1 277 LEU n 1 278 HIS n 1 279 ALA n 1 280 ASP n 1 281 PRO n 1 282 THR n 1 283 LEU n 1 284 ARG n 1 285 PRO n 1 286 SER n 1 287 VAL n 1 288 ALA n 1 289 GLU n 1 290 LEU n 1 291 LEU n 1 292 THR n 1 293 ASP n 1 294 GLU n 1 295 PHE n 1 296 PHE n 1 297 THR n 1 298 SER n 1 299 GLY n 1 300 TYR n 1 301 ALA n 1 302 PRO n 1 303 MET n 1 304 ARG n 1 305 LEU n 1 306 PRO n 1 307 THR n 1 308 SER n 1 309 CYS n 1 310 LEU n 1 311 THR n 1 312 VAL n 1 313 PRO n 1 314 PRO n 1 315 ARG n 1 316 PHE n 1 317 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'leopard danio,zebra danio,zebra fish' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene plk1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Danio rerio' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) Star' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX6P-1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TPO 'L-peptide linking' n PHOSPHOTHREONINE PHOSPHONOTHREONINE 'C4 H10 N O6 P' 199.099 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 PRO 2 -3 ? ? ? A . n A 1 3 LEU 3 -2 ? ? ? A . n A 1 4 GLY 4 -1 ? ? ? A . n A 1 5 SER 5 0 ? ? ? A . n A 1 6 MET 6 1 ? ? ? A . n A 1 7 SER 7 2 ? ? ? A . n A 1 8 ALA 8 3 ? ? ? A . n A 1 9 ALA 9 4 ? ? ? A . n A 1 10 ILE 10 5 ? ? ? A . n A 1 11 ALA 11 6 ? ? ? A . n A 1 12 LYS 12 7 ? ? ? A . n A 1 13 PRO 13 8 ? ? ? A . n A 1 14 SER 14 9 ? ? ? A . n A 1 15 ALA 15 10 ? ? ? A . n A 1 16 LYS 16 11 ? ? ? A . n A 1 17 PRO 17 12 ? ? ? A . n A 1 18 SER 18 13 ? ? ? A . n A 1 19 ALA 19 14 ? ? ? A . n A 1 20 HIS 20 15 ? ? ? A . n A 1 21 VAL 21 16 ? ? ? A . n A 1 22 ASP 22 17 ? ? ? A . n A 1 23 PRO 23 18 ? ? ? A . n A 1 24 LYS 24 19 ? ? ? A . n A 1 25 SER 25 20 ? ? ? A . n A 1 26 ALA 26 21 ? ? ? A . n A 1 27 PRO 27 22 ? ? ? A . n A 1 28 LEU 28 23 ? ? ? A . n A 1 29 LYS 29 24 24 LYS LYS A . n A 1 30 GLU 30 25 25 GLU GLU A . n A 1 31 ILE 31 26 26 ILE ILE A . n A 1 32 PRO 32 27 27 PRO PRO A . n A 1 33 ASP 33 28 28 ASP ASP A . n A 1 34 VAL 34 29 29 VAL VAL A . n A 1 35 LEU 35 30 30 LEU LEU A . n A 1 36 VAL 36 31 31 VAL VAL A . n A 1 37 ASP 37 32 32 ASP ASP A . n A 1 38 PRO 38 33 33 PRO PRO A . n A 1 39 ARG 39 34 34 ARG ARG A . n A 1 40 THR 40 35 35 THR THR A . n A 1 41 MET 41 36 36 MET MET A . n A 1 42 LYS 42 37 37 LYS LYS A . n A 1 43 ARG 43 38 38 ARG ARG A . n A 1 44 TYR 44 39 39 TYR TYR A . n A 1 45 MET 45 40 40 MET MET A . n A 1 46 ARG 46 41 41 ARG ARG A . n A 1 47 GLY 47 42 42 GLY GLY A . n A 1 48 ARG 48 43 43 ARG ARG A . n A 1 49 PHE 49 44 44 PHE PHE A . n A 1 50 LEU 50 45 45 LEU LEU A . n A 1 51 GLY 51 46 46 GLY GLY A . n A 1 52 LYS 52 47 47 LYS LYS A . n A 1 53 GLY 53 48 48 GLY GLY A . n A 1 54 GLY 54 49 49 GLY GLY A . n A 1 55 PHE 55 50 50 PHE PHE A . n A 1 56 ALA 56 51 51 ALA ALA A . n A 1 57 LYS 57 52 52 LYS LYS A . n A 1 58 CYS 58 53 53 CYS CYS A . n A 1 59 TYR 59 54 54 TYR TYR A . n A 1 60 GLU 60 55 55 GLU GLU A . n A 1 61 ILE 61 56 56 ILE ILE A . n A 1 62 THR 62 57 57 THR THR A . n A 1 63 ASP 63 58 58 ASP ASP A . n A 1 64 MET 64 59 59 MET MET A . n A 1 65 ASP 65 60 60 ASP ASP A . n A 1 66 THR 66 61 61 THR THR A . n A 1 67 LYS 67 62 62 LYS LYS A . n A 1 68 GLU 68 63 63 GLU GLU A . n A 1 69 VAL 69 64 64 VAL VAL A . n A 1 70 PHE 70 65 65 PHE PHE A . n A 1 71 ALA 71 66 66 ALA ALA A . n A 1 72 GLY 72 67 67 GLY GLY A . n A 1 73 LYS 73 68 68 LYS LYS A . n A 1 74 VAL 74 69 69 VAL VAL A . n A 1 75 VAL 75 70 70 VAL VAL A . n A 1 76 PRO 76 71 71 PRO PRO A . n A 1 77 LYS 77 72 72 LYS LYS A . n A 1 78 SER 78 73 73 SER SER A . n A 1 79 MET 79 74 74 MET MET A . n A 1 80 LEU 80 75 75 LEU LEU A . n A 1 81 LEU 81 76 ? ? ? A . n A 1 82 LYS 82 77 ? ? ? A . n A 1 83 PRO 83 78 78 PRO PRO A . n A 1 84 HIS 84 79 79 HIS HIS A . n A 1 85 GLN 85 80 80 GLN GLN A . n A 1 86 LYS 86 81 81 LYS LYS A . n A 1 87 GLU 87 82 82 GLU GLU A . n A 1 88 LYS 88 83 83 LYS LYS A . n A 1 89 MET 89 84 84 MET MET A . n A 1 90 SER 90 85 85 SER SER A . n A 1 91 THR 91 86 86 THR THR A . n A 1 92 GLU 92 87 87 GLU GLU A . n A 1 93 ILE 93 88 88 ILE ILE A . n A 1 94 ALA 94 89 89 ALA ALA A . n A 1 95 ILE 95 90 90 ILE ILE A . n A 1 96 HIS 96 91 91 HIS HIS A . n A 1 97 LYS 97 92 92 LYS LYS A . n A 1 98 SER 98 93 93 SER SER A . n A 1 99 LEU 99 94 94 LEU LEU A . n A 1 100 ASP 100 95 95 ASP ASP A . n A 1 101 ASN 101 96 96 ASN ASN A . n A 1 102 PRO 102 97 97 PRO PRO A . n A 1 103 HIS 103 98 98 HIS HIS A . n A 1 104 VAL 104 99 99 VAL VAL A . n A 1 105 VAL 105 100 100 VAL VAL A . n A 1 106 GLY 106 101 101 GLY GLY A . n A 1 107 PHE 107 102 102 PHE PHE A . n A 1 108 HIS 108 103 103 HIS HIS A . n A 1 109 GLY 109 104 104 GLY GLY A . n A 1 110 PHE 110 105 105 PHE PHE A . n A 1 111 PHE 111 106 106 PHE PHE A . n A 1 112 GLU 112 107 107 GLU GLU A . n A 1 113 ASP 113 108 108 ASP ASP A . n A 1 114 ASP 114 109 109 ASP ASP A . n A 1 115 ASP 115 110 110 ASP ASP A . n A 1 116 PHE 116 111 111 PHE PHE A . n A 1 117 VAL 117 112 112 VAL VAL A . n A 1 118 TYR 118 113 113 TYR TYR A . n A 1 119 VAL 119 114 114 VAL VAL A . n A 1 120 VAL 120 115 115 VAL VAL A . n A 1 121 LEU 121 116 116 LEU LEU A . n A 1 122 GLU 122 117 117 GLU GLU A . n A 1 123 ILE 123 118 118 ILE ILE A . n A 1 124 CYS 124 119 119 CYS CYS A . n A 1 125 ARG 125 120 120 ARG ARG A . n A 1 126 ARG 126 121 121 ARG ARG A . n A 1 127 ARG 127 122 122 ARG ARG A . n A 1 128 SER 128 123 123 SER SER A . n A 1 129 LEU 129 124 124 LEU LEU A . n A 1 130 LEU 130 125 125 LEU LEU A . n A 1 131 GLU 131 126 126 GLU GLU A . n A 1 132 LEU 132 127 127 LEU LEU A . n A 1 133 HIS 133 128 128 HIS HIS A . n A 1 134 LYS 134 129 129 LYS LYS A . n A 1 135 ARG 135 130 130 ARG ARG A . n A 1 136 ARG 136 131 131 ARG ARG A . n A 1 137 LYS 137 132 132 LYS LYS A . n A 1 138 ALA 138 133 133 ALA ALA A . n A 1 139 VAL 139 134 134 VAL VAL A . n A 1 140 THR 140 135 135 THR THR A . n A 1 141 GLU 141 136 136 GLU GLU A . n A 1 142 PRO 142 137 137 PRO PRO A . n A 1 143 GLU 143 138 138 GLU GLU A . n A 1 144 ALA 144 139 139 ALA ALA A . n A 1 145 ARG 145 140 140 ARG ARG A . n A 1 146 TYR 146 141 141 TYR TYR A . n A 1 147 PHE 147 142 142 PHE PHE A . n A 1 148 MET 148 143 143 MET MET A . n A 1 149 ARG 149 144 144 ARG ARG A . n A 1 150 GLN 150 145 145 GLN GLN A . n A 1 151 THR 151 146 146 THR THR A . n A 1 152 ILE 152 147 147 ILE ILE A . n A 1 153 GLN 153 148 148 GLN GLN A . n A 1 154 GLY 154 149 149 GLY GLY A . n A 1 155 VAL 155 150 150 VAL VAL A . n A 1 156 GLN 156 151 151 GLN GLN A . n A 1 157 TYR 157 152 152 TYR TYR A . n A 1 158 LEU 158 153 153 LEU LEU A . n A 1 159 HIS 159 154 154 HIS HIS A . n A 1 160 ASN 160 155 155 ASN ASN A . n A 1 161 ASN 161 156 156 ASN ASN A . n A 1 162 ARG 162 157 157 ARG ARG A . n A 1 163 VAL 163 158 158 VAL VAL A . n A 1 164 ILE 164 159 159 ILE ILE A . n A 1 165 HIS 165 160 160 HIS HIS A . n A 1 166 ARG 166 161 161 ARG ARG A . n A 1 167 ASP 167 162 162 ASP ASP A . n A 1 168 LEU 168 163 163 LEU LEU A . n A 1 169 LYS 169 164 164 LYS LYS A . n A 1 170 LEU 170 165 165 LEU LEU A . n A 1 171 GLY 171 166 166 GLY GLY A . n A 1 172 ASN 172 167 167 ASN ASN A . n A 1 173 LEU 173 168 168 LEU LEU A . n A 1 174 PHE 174 169 169 PHE PHE A . n A 1 175 LEU 175 170 170 LEU LEU A . n A 1 176 ASN 176 171 171 ASN ASN A . n A 1 177 ASP 177 172 172 ASP ASP A . n A 1 178 ASP 178 173 173 ASP ASP A . n A 1 179 MET 179 174 174 MET MET A . n A 1 180 ASP 180 175 175 ASP ASP A . n A 1 181 VAL 181 176 176 VAL VAL A . n A 1 182 LYS 182 177 177 LYS LYS A . n A 1 183 ILE 183 178 178 ILE ILE A . n A 1 184 GLY 184 179 179 GLY GLY A . n A 1 185 ASP 185 180 180 ASP ASP A . n A 1 186 PHE 186 181 181 PHE PHE A . n A 1 187 GLY 187 182 182 GLY GLY A . n A 1 188 LEU 188 183 183 LEU LEU A . n A 1 189 ALA 189 184 184 ALA ALA A . n A 1 190 THR 190 185 185 THR THR A . n A 1 191 LYS 191 186 186 LYS LYS A . n A 1 192 ILE 192 187 187 ILE ILE A . n A 1 193 GLU 193 188 188 GLU GLU A . n A 1 194 PHE 194 189 189 PHE PHE A . n A 1 195 ASP 195 190 190 ASP ASP A . n A 1 196 GLY 196 191 191 GLY GLY A . n A 1 197 GLU 197 192 192 GLU GLU A . n A 1 198 ARG 198 193 193 ARG ARG A . n A 1 199 LYS 199 194 194 LYS LYS A . n A 1 200 LYS 200 195 195 LYS LYS A . n A 1 201 TPO 201 196 196 TPO TPO A . n A 1 202 LEU 202 197 197 LEU LEU A . n A 1 203 CYS 203 198 198 CYS CYS A . n A 1 204 GLY 204 199 199 GLY GLY A . n A 1 205 THR 205 200 200 THR THR A . n A 1 206 PRO 206 201 201 PRO PRO A . n A 1 207 ASN 207 202 202 ASN ASN A . n A 1 208 TYR 208 203 203 TYR TYR A . n A 1 209 ILE 209 204 204 ILE ILE A . n A 1 210 ALA 210 205 205 ALA ALA A . n A 1 211 PRO 211 206 206 PRO PRO A . n A 1 212 GLU 212 207 207 GLU GLU A . n A 1 213 VAL 213 208 208 VAL VAL A . n A 1 214 LEU 214 209 209 LEU LEU A . n A 1 215 CYS 215 210 210 CYS CYS A . n A 1 216 LYS 216 211 211 LYS LYS A . n A 1 217 LYS 217 212 212 LYS LYS A . n A 1 218 GLY 218 213 213 GLY GLY A . n A 1 219 HIS 219 214 214 HIS HIS A . n A 1 220 SER 220 215 215 SER SER A . n A 1 221 PHE 221 216 216 PHE PHE A . n A 1 222 GLU 222 217 217 GLU GLU A . n A 1 223 VAL 223 218 218 VAL VAL A . n A 1 224 ASP 224 219 219 ASP ASP A . n A 1 225 ILE 225 220 220 ILE ILE A . n A 1 226 TRP 226 221 221 TRP TRP A . n A 1 227 SER 227 222 222 SER SER A . n A 1 228 LEU 228 223 223 LEU LEU A . n A 1 229 GLY 229 224 224 GLY GLY A . n A 1 230 CYS 230 225 225 CYS CYS A . n A 1 231 ILE 231 226 226 ILE ILE A . n A 1 232 LEU 232 227 227 LEU LEU A . n A 1 233 TYR 233 228 228 TYR TYR A . n A 1 234 THR 234 229 229 THR THR A . n A 1 235 LEU 235 230 230 LEU LEU A . n A 1 236 LEU 236 231 231 LEU LEU A . n A 1 237 VAL 237 232 232 VAL VAL A . n A 1 238 GLY 238 233 233 GLY GLY A . n A 1 239 LYS 239 234 234 LYS LYS A . n A 1 240 PRO 240 235 235 PRO PRO A . n A 1 241 PRO 241 236 236 PRO PRO A . n A 1 242 PHE 242 237 237 PHE PHE A . n A 1 243 GLU 243 238 238 GLU GLU A . n A 1 244 THR 244 239 239 THR THR A . n A 1 245 SER 245 240 240 SER SER A . n A 1 246 CYS 246 241 241 CYS CYS A . n A 1 247 LEU 247 242 242 LEU LEU A . n A 1 248 LYS 248 243 243 LYS LYS A . n A 1 249 GLU 249 244 244 GLU GLU A . n A 1 250 THR 250 245 245 THR THR A . n A 1 251 TYR 251 246 246 TYR TYR A . n A 1 252 ILE 252 247 247 ILE ILE A . n A 1 253 ARG 253 248 248 ARG ARG A . n A 1 254 ILE 254 249 249 ILE ILE A . n A 1 255 LYS 255 250 250 LYS LYS A . n A 1 256 LYS 256 251 251 LYS LYS A . n A 1 257 ASN 257 252 252 ASN ASN A . n A 1 258 GLU 258 253 253 GLU GLU A . n A 1 259 TYR 259 254 254 TYR TYR A . n A 1 260 SER 260 255 255 SER SER A . n A 1 261 VAL 261 256 256 VAL VAL A . n A 1 262 PRO 262 257 257 PRO PRO A . n A 1 263 ARG 263 258 258 ARG ARG A . n A 1 264 HIS 264 259 259 HIS HIS A . n A 1 265 ILE 265 260 260 ILE ILE A . n A 1 266 ASN 266 261 261 ASN ASN A . n A 1 267 PRO 267 262 262 PRO PRO A . n A 1 268 VAL 268 263 263 VAL VAL A . n A 1 269 ALA 269 264 264 ALA ALA A . n A 1 270 SER 270 265 265 SER SER A . n A 1 271 ALA 271 266 266 ALA ALA A . n A 1 272 LEU 272 267 267 LEU LEU A . n A 1 273 ILE 273 268 268 ILE ILE A . n A 1 274 ARG 274 269 269 ARG ARG A . n A 1 275 ARG 275 270 270 ARG ARG A . n A 1 276 MET 276 271 271 MET MET A . n A 1 277 LEU 277 272 272 LEU LEU A . n A 1 278 HIS 278 273 273 HIS HIS A . n A 1 279 ALA 279 274 274 ALA ALA A . n A 1 280 ASP 280 275 275 ASP ASP A . n A 1 281 PRO 281 276 276 PRO PRO A . n A 1 282 THR 282 277 277 THR THR A . n A 1 283 LEU 283 278 278 LEU LEU A . n A 1 284 ARG 284 279 279 ARG ARG A . n A 1 285 PRO 285 280 280 PRO PRO A . n A 1 286 SER 286 281 281 SER SER A . n A 1 287 VAL 287 282 282 VAL VAL A . n A 1 288 ALA 288 283 283 ALA ALA A . n A 1 289 GLU 289 284 284 GLU GLU A . n A 1 290 LEU 290 285 285 LEU LEU A . n A 1 291 LEU 291 286 286 LEU LEU A . n A 1 292 THR 292 287 287 THR THR A . n A 1 293 ASP 293 288 288 ASP ASP A . n A 1 294 GLU 294 289 289 GLU GLU A . n A 1 295 PHE 295 290 290 PHE PHE A . n A 1 296 PHE 296 291 291 PHE PHE A . n A 1 297 THR 297 292 292 THR THR A . n A 1 298 SER 298 293 293 SER SER A . n A 1 299 GLY 299 294 294 GLY GLY A . n A 1 300 TYR 300 295 295 TYR TYR A . n A 1 301 ALA 301 296 296 ALA ALA A . n A 1 302 PRO 302 297 297 PRO PRO A . n A 1 303 MET 303 298 298 MET MET A . n A 1 304 ARG 304 299 299 ARG ARG A . n A 1 305 LEU 305 300 300 LEU LEU A . n A 1 306 PRO 306 301 301 PRO PRO A . n A 1 307 THR 307 302 302 THR THR A . n A 1 308 SER 308 303 303 SER SER A . n A 1 309 CYS 309 304 304 CYS CYS A . n A 1 310 LEU 310 305 305 LEU LEU A . n A 1 311 THR 311 306 306 THR THR A . n A 1 312 VAL 312 307 307 VAL VAL A . n A 1 313 PRO 313 308 308 PRO PRO A . n A 1 314 PRO 314 309 309 PRO PRO A . n A 1 315 ARG 315 310 310 ARG ARG A . n A 1 316 PHE 316 311 ? ? ? A . n A 1 317 SER 317 312 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP 1 313 1 ADP ADP A . C 3 HOH 1 314 1 HOH HOH A . C 3 HOH 2 315 2 HOH HOH A . C 3 HOH 3 316 3 HOH HOH A . C 3 HOH 4 317 5 HOH HOH A . C 3 HOH 5 318 6 HOH HOH A . C 3 HOH 6 319 7 HOH HOH A . C 3 HOH 7 320 8 HOH HOH A . C 3 HOH 8 321 9 HOH HOH A . C 3 HOH 9 322 10 HOH HOH A . C 3 HOH 10 323 11 HOH HOH A . C 3 HOH 11 324 13 HOH HOH A . C 3 HOH 12 325 14 HOH HOH A . C 3 HOH 13 326 15 HOH HOH A . C 3 HOH 14 327 16 HOH HOH A . C 3 HOH 15 328 17 HOH HOH A . C 3 HOH 16 329 18 HOH HOH A . C 3 HOH 17 330 19 HOH HOH A . C 3 HOH 18 331 20 HOH HOH A . C 3 HOH 19 332 21 HOH HOH A . C 3 HOH 20 333 22 HOH HOH A . C 3 HOH 21 334 23 HOH HOH A . C 3 HOH 22 335 24 HOH HOH A . C 3 HOH 23 336 25 HOH HOH A . C 3 HOH 24 337 26 HOH HOH A . C 3 HOH 25 338 27 HOH HOH A . C 3 HOH 26 339 28 HOH HOH A . C 3 HOH 27 340 29 HOH HOH A . C 3 HOH 28 341 30 HOH HOH A . C 3 HOH 29 342 31 HOH HOH A . C 3 HOH 30 343 32 HOH HOH A . C 3 HOH 31 344 33 HOH HOH A . C 3 HOH 32 345 34 HOH HOH A . C 3 HOH 33 346 35 HOH HOH A . C 3 HOH 34 347 36 HOH HOH A . C 3 HOH 35 348 37 HOH HOH A . C 3 HOH 36 349 38 HOH HOH A . C 3 HOH 37 350 39 HOH HOH A . C 3 HOH 38 351 41 HOH HOH A . C 3 HOH 39 352 44 HOH HOH A . C 3 HOH 40 353 45 HOH HOH A . C 3 HOH 41 354 49 HOH HOH A . C 3 HOH 42 355 50 HOH HOH A . C 3 HOH 43 356 51 HOH HOH A . C 3 HOH 44 357 52 HOH HOH A . C 3 HOH 45 358 54 HOH HOH A . C 3 HOH 46 359 59 HOH HOH A . C 3 HOH 47 360 61 HOH HOH A . C 3 HOH 48 361 62 HOH HOH A . C 3 HOH 49 362 67 HOH HOH A . C 3 HOH 50 363 68 HOH HOH A . C 3 HOH 51 364 69 HOH HOH A . C 3 HOH 52 365 71 HOH HOH A . C 3 HOH 53 366 72 HOH HOH A . C 3 HOH 54 367 73 HOH HOH A . C 3 HOH 55 368 75 HOH HOH A . C 3 HOH 56 369 77 HOH HOH A . C 3 HOH 57 370 79 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 34 ? CG ? A ARG 39 CG 2 1 Y 1 A ARG 34 ? CD ? A ARG 39 CD 3 1 Y 1 A ARG 34 ? NE ? A ARG 39 NE 4 1 Y 1 A ARG 34 ? CZ ? A ARG 39 CZ 5 1 Y 1 A ARG 34 ? NH1 ? A ARG 39 NH1 6 1 Y 1 A ARG 34 ? NH2 ? A ARG 39 NH2 7 1 Y 1 A PHE 50 ? CB ? A PHE 55 CB 8 1 Y 1 A PHE 50 ? CG ? A PHE 55 CG 9 1 Y 1 A PHE 50 ? CD1 ? A PHE 55 CD1 10 1 Y 1 A PHE 50 ? CD2 ? A PHE 55 CD2 11 1 Y 1 A PHE 50 ? CE1 ? A PHE 55 CE1 12 1 Y 1 A PHE 50 ? CE2 ? A PHE 55 CE2 13 1 Y 1 A PHE 50 ? CZ ? A PHE 55 CZ 14 1 Y 0 A LYS 68 ? CD ? A LYS 73 CD 15 1 Y 0 A LYS 68 ? CE ? A LYS 73 CE 16 1 Y 0 A LYS 68 ? NZ ? A LYS 73 NZ 17 1 Y 0 A MET 74 ? CG ? A MET 79 CG 18 1 Y 0 A MET 74 ? SD ? A MET 79 SD 19 1 Y 0 A MET 74 ? CE ? A MET 79 CE 20 1 Y 1 A HIS 79 ? CG ? A HIS 84 CG 21 1 Y 1 A HIS 79 ? ND1 ? A HIS 84 ND1 22 1 Y 1 A HIS 79 ? CD2 ? A HIS 84 CD2 23 1 Y 1 A HIS 79 ? CE1 ? A HIS 84 CE1 24 1 Y 1 A HIS 79 ? NE2 ? A HIS 84 NE2 25 1 Y 1 A GLN 80 ? CD ? A GLN 85 CD 26 1 Y 1 A GLN 80 ? OE1 ? A GLN 85 OE1 27 1 Y 1 A GLN 80 ? NE2 ? A GLN 85 NE2 28 1 Y 1 A LYS 81 ? CG ? A LYS 86 CG 29 1 Y 1 A LYS 81 ? CD ? A LYS 86 CD 30 1 Y 1 A LYS 81 ? CE ? A LYS 86 CE 31 1 Y 1 A LYS 81 ? NZ ? A LYS 86 NZ 32 1 Y 1 A GLU 82 ? CG ? A GLU 87 CG 33 1 Y 1 A GLU 82 ? CD ? A GLU 87 CD 34 1 Y 1 A GLU 82 ? OE1 ? A GLU 87 OE1 35 1 Y 1 A GLU 82 ? OE2 ? A GLU 87 OE2 36 1 Y 0 A LYS 92 ? CD ? A LYS 97 CD 37 1 Y 0 A LYS 92 ? CE ? A LYS 97 CE 38 1 Y 0 A LYS 92 ? NZ ? A LYS 97 NZ 39 1 Y 1 A ARG 157 ? CD ? A ARG 162 CD 40 1 Y 1 A ARG 157 ? NE ? A ARG 162 NE 41 1 Y 1 A ARG 157 ? CZ ? A ARG 162 CZ 42 1 Y 1 A ARG 157 ? NH1 ? A ARG 162 NH1 43 1 Y 1 A ARG 157 ? NH2 ? A ARG 162 NH2 44 1 Y 1 A LYS 195 ? CG ? A LYS 200 CG 45 1 Y 1 A LYS 195 ? CD ? A LYS 200 CD 46 1 Y 1 A LYS 195 ? CE ? A LYS 200 CE 47 1 Y 1 A LYS 195 ? NZ ? A LYS 200 NZ 48 1 Y 1 A LYS 211 ? CG ? A LYS 216 CG 49 1 Y 1 A LYS 211 ? CD ? A LYS 216 CD 50 1 Y 1 A LYS 211 ? CE ? A LYS 216 CE 51 1 Y 1 A LYS 211 ? NZ ? A LYS 216 NZ 52 1 Y 1 A LYS 212 ? CG ? A LYS 217 CG 53 1 Y 1 A LYS 212 ? CD ? A LYS 217 CD 54 1 Y 1 A LYS 212 ? CE ? A LYS 217 CE 55 1 Y 1 A LYS 212 ? NZ ? A LYS 217 NZ 56 1 Y 1 A LYS 234 ? CD ? A LYS 239 CD 57 1 Y 1 A LYS 234 ? CE ? A LYS 239 CE 58 1 Y 1 A LYS 234 ? NZ ? A LYS 239 NZ 59 1 Y 0 A LYS 250 ? CD ? A LYS 255 CD 60 1 Y 0 A LYS 250 ? CE ? A LYS 255 CE 61 1 Y 0 A LYS 250 ? NZ ? A LYS 255 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 CrystalClear 'data collection' . ? 2 CrystalClear 'data reduction' . ? 3 d*TREK 'data scaling' . ? 4 MOLREP phasing . ? 5 # _cell.entry_id 3D5W _cell.length_a 133.990 _cell.length_b 133.990 _cell.length_c 133.990 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D5W _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3D5W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.79 _exptl_crystal.density_percent_sol 55.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;hanging-drop vapor diffusion at 4 C (277K); protein at 6 mg/ml in 50 mM Tris-HCl pH 7.5, 200 mM NaCl, 3 mM DTT, 4 mM ATP, and 4 mM MgSO4; crystallization condition: 0.2 M disodium tartrate dihydrate and 20% PEG 3350; cryoprotectant: 15% ethylene glycol, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 180 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.pdbx_collection_date 2006-12-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Side scattering bent cube-root I-beam single crystal; asymmetric cut 4.965 degs' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 3D5W _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 30 _reflns.number_all ? _reflns.number_obs 12461 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.6 _reflns_shell.d_res_low 2.74 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.348 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3D5W _refine.ls_number_reflns_obs 11348 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.60 _refine.ls_percent_reflns_obs 99.89 _refine.ls_R_factor_obs 0.24418 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.24155 _refine.ls_R_factor_R_free 0.2711 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.9 _refine.ls_number_reflns_R_free 1113 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.927 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 61.518 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3d5v _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.700 _refine.pdbx_overall_ESU_R_Free 0.330 _refine.overall_SU_ML 0.246 _refine.overall_SU_B 11.282 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2264 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 2348 _refine_hist.d_res_high 2.60 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.022 ? 2332 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.927 1.994 ? 3163 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 3.954 5.000 ? 283 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.795 22.600 ? 100 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.017 15.000 ? 396 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.889 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.058 0.200 ? 353 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1737 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.162 0.200 ? 1036 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.293 0.200 ? 1615 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.099 0.200 ? 83 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.167 0.200 ? 31 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.097 0.200 ? 4 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.187 2.500 ? 1463 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.098 5.000 ? 2309 'X-RAY DIFFRACTION' ? r_scbond_it 0.875 2.500 ? 972 'X-RAY DIFFRACTION' ? r_scangle_it 1.446 5.000 ? 854 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.d_res_high 2.601 _refine_ls_shell.d_res_low 2.691 _refine_ls_shell.number_reflns_R_work 1096 _refine_ls_shell.R_factor_R_work 0.326 _refine_ls_shell.percent_reflns_obs 99.92 _refine_ls_shell.R_factor_R_free 0.434 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3D5W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3D5W _struct.title 'Crystal structure of a phosphorylated Polo-like kinase 1 (Plk1) catalytic domain in complex with ADP.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D5W _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Polo-like kinase 1, Plk1, catalytic domain, small-molecule inhibitor, Kinase, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q4KMI8_DANRE _struct_ref.pdbx_db_accession Q4KMI8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSAAIAKPSAKPSAHVDPKSAPLKEIPDVLVDPRTMKRYMRGRFLGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQ KEKMSTEIAIHKSLDNPHVVGFHGFFEDDDFVYVVLEICRRRSLLELHKRRKAVTEPEARYFMRQTIQGVQYLHNNRVIH RDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETS CLKETYIRIKKNEYSVPRHINPVASALIRRMLHADPTLRPSVAELLTDEFFTSGYAPMRLPTSCLTVPPRFS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D5W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 317 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q4KMI8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 312 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 312 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3D5W GLY A 1 ? UNP Q4KMI8 ? ? 'expression tag' -4 1 1 3D5W PRO A 2 ? UNP Q4KMI8 ? ? 'expression tag' -3 2 1 3D5W LEU A 3 ? UNP Q4KMI8 ? ? 'expression tag' -2 3 1 3D5W GLY A 4 ? UNP Q4KMI8 ? ? 'expression tag' -1 4 1 3D5W SER A 5 ? UNP Q4KMI8 ? ? 'expression tag' 0 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 84 ? SER A 98 ? HIS A 79 SER A 93 1 ? 15 HELX_P HELX_P2 2 SER A 128 ? LYS A 137 ? SER A 123 LYS A 132 1 ? 10 HELX_P HELX_P3 3 THR A 140 ? ASN A 161 ? THR A 135 ASN A 156 1 ? 22 HELX_P HELX_P4 4 ALA A 210 ? CYS A 215 ? ALA A 205 CYS A 210 1 ? 6 HELX_P HELX_P5 5 GLU A 222 ? GLY A 238 ? GLU A 217 GLY A 233 1 ? 17 HELX_P HELX_P6 6 CYS A 246 ? LYS A 256 ? CYS A 241 LYS A 251 1 ? 11 HELX_P HELX_P7 7 ASN A 266 ? LEU A 277 ? ASN A 261 LEU A 272 1 ? 12 HELX_P HELX_P8 8 ASP A 280 ? ARG A 284 ? ASP A 275 ARG A 279 5 ? 5 HELX_P HELX_P9 9 SER A 286 ? THR A 292 ? SER A 281 THR A 287 1 ? 7 HELX_P HELX_P10 10 ASP A 293 ? SER A 298 ? ASP A 288 SER A 293 1 ? 6 HELX_P HELX_P11 11 PRO A 306 ? THR A 311 ? PRO A 301 THR A 306 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LYS 200 C ? ? ? 1_555 A TPO 201 N ? ? A LYS 195 A TPO 196 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A TPO 201 C ? ? ? 1_555 A LEU 202 N ? ? A TPO 196 A LEU 197 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id TPO _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 201 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id TPO _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 196 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id THR _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id TPO _pdbx_modification_feature.type Phosphorylation _pdbx_modification_feature.category 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 34 ? VAL A 36 ? VAL A 29 VAL A 31 A 2 ARG A 43 ? LYS A 52 ? ARG A 38 LYS A 47 A 3 LYS A 57 ? ASP A 63 ? LYS A 52 ASP A 58 A 4 VAL A 69 ? PRO A 76 ? VAL A 64 PRO A 71 A 5 PHE A 116 ? LEU A 121 ? PHE A 111 LEU A 116 A 6 PHE A 107 ? GLU A 112 ? PHE A 102 GLU A 107 B 1 VAL A 163 ? ILE A 164 ? VAL A 158 ILE A 159 B 2 THR A 190 ? LYS A 191 ? THR A 185 LYS A 186 C 1 LEU A 173 ? LEU A 175 ? LEU A 168 LEU A 170 C 2 VAL A 181 ? ILE A 183 ? VAL A 176 ILE A 178 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 35 ? N LEU A 30 O TYR A 44 ? O TYR A 39 A 2 3 N MET A 45 ? N MET A 40 O THR A 62 ? O THR A 57 A 3 4 N TYR A 59 ? N TYR A 54 O GLY A 72 ? O GLY A 67 A 4 5 N ALA A 71 ? N ALA A 66 O LEU A 121 ? O LEU A 116 A 5 6 O TYR A 118 ? O TYR A 113 N PHE A 111 ? N PHE A 106 B 1 2 N ILE A 164 ? N ILE A 159 O THR A 190 ? O THR A 185 C 1 2 N PHE A 174 ? N PHE A 169 O LYS A 182 ? O LYS A 177 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ADP _struct_site.pdbx_auth_seq_id 313 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'BINDING SITE FOR RESIDUE ADP A 313' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LEU A 50 ? LEU A 45 . ? 1_555 ? 2 AC1 10 LYS A 52 ? LYS A 47 . ? 1_555 ? 3 AC1 10 GLY A 54 ? GLY A 49 . ? 1_555 ? 4 AC1 10 ALA A 56 ? ALA A 51 . ? 1_555 ? 5 AC1 10 ALA A 71 ? ALA A 66 . ? 1_555 ? 6 AC1 10 GLU A 122 ? GLU A 117 . ? 1_555 ? 7 AC1 10 CYS A 124 ? CYS A 119 . ? 1_555 ? 8 AC1 10 ARG A 127 ? ARG A 122 . ? 1_555 ? 9 AC1 10 PHE A 174 ? PHE A 169 . ? 1_555 ? 10 AC1 10 ASP A 185 ? ASP A 180 . ? 1_555 ? # _pdbx_entry_details.entry_id 3D5W _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 34 ? ? -69.91 -82.66 2 1 PRO A 97 ? ? -59.91 -6.18 3 1 ASP A 108 ? ? -95.04 -140.38 4 1 ARG A 122 ? ? 50.70 -142.71 5 1 LYS A 132 ? ? 61.14 -144.51 6 1 ARG A 161 ? ? 67.56 -5.93 7 1 ASP A 180 ? ? 52.58 90.43 8 1 GLU A 188 ? ? -102.01 -64.41 9 1 LYS A 211 ? ? 57.21 14.36 10 1 SER A 215 ? ? -140.46 -139.10 11 1 LEU A 272 ? ? -99.54 43.18 12 1 SER A 293 ? ? -89.51 -70.00 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id TPO _pdbx_struct_mod_residue.label_seq_id 201 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id TPO _pdbx_struct_mod_residue.auth_seq_id 196 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id THR _pdbx_struct_mod_residue.details PHOSPHOTHREONINE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A PRO -3 ? A PRO 2 3 1 Y 1 A LEU -2 ? A LEU 3 4 1 Y 1 A GLY -1 ? A GLY 4 5 1 Y 1 A SER 0 ? A SER 5 6 1 Y 1 A MET 1 ? A MET 6 7 1 Y 1 A SER 2 ? A SER 7 8 1 Y 1 A ALA 3 ? A ALA 8 9 1 Y 1 A ALA 4 ? A ALA 9 10 1 Y 1 A ILE 5 ? A ILE 10 11 1 Y 1 A ALA 6 ? A ALA 11 12 1 Y 1 A LYS 7 ? A LYS 12 13 1 Y 1 A PRO 8 ? A PRO 13 14 1 Y 1 A SER 9 ? A SER 14 15 1 Y 1 A ALA 10 ? A ALA 15 16 1 Y 1 A LYS 11 ? A LYS 16 17 1 Y 1 A PRO 12 ? A PRO 17 18 1 Y 1 A SER 13 ? A SER 18 19 1 Y 1 A ALA 14 ? A ALA 19 20 1 Y 1 A HIS 15 ? A HIS 20 21 1 Y 1 A VAL 16 ? A VAL 21 22 1 Y 1 A ASP 17 ? A ASP 22 23 1 Y 1 A PRO 18 ? A PRO 23 24 1 Y 1 A LYS 19 ? A LYS 24 25 1 Y 1 A SER 20 ? A SER 25 26 1 Y 1 A ALA 21 ? A ALA 26 27 1 Y 1 A PRO 22 ? A PRO 27 28 1 Y 1 A LEU 23 ? A LEU 28 29 1 Y 1 A LEU 76 ? A LEU 81 30 1 Y 1 A LYS 77 ? A LYS 82 31 1 Y 1 A PHE 311 ? A PHE 316 32 1 Y 1 A SER 312 ? A SER 317 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADP PB P N N 1 ADP O1B O N N 2 ADP O2B O N N 3 ADP O3B O N N 4 ADP PA P N S 5 ADP O1A O N N 6 ADP O2A O N N 7 ADP O3A O N N 8 ADP "O5'" O N N 9 ADP "C5'" C N N 10 ADP "C4'" C N R 11 ADP "O4'" O N N 12 ADP "C3'" C N S 13 ADP "O3'" O N N 14 ADP "C2'" C N R 15 ADP "O2'" O N N 16 ADP "C1'" C N R 17 ADP N9 N Y N 18 ADP C8 C Y N 19 ADP N7 N Y N 20 ADP C5 C Y N 21 ADP C6 C Y N 22 ADP N6 N N N 23 ADP N1 N Y N 24 ADP C2 C Y N 25 ADP N3 N Y N 26 ADP C4 C Y N 27 ADP HOB2 H N N 28 ADP HOB3 H N N 29 ADP HOA2 H N N 30 ADP "H5'1" H N N 31 ADP "H5'2" H N N 32 ADP "H4'" H N N 33 ADP "H3'" H N N 34 ADP "HO3'" H N N 35 ADP "H2'" H N N 36 ADP "HO2'" H N N 37 ADP "H1'" H N N 38 ADP H8 H N N 39 ADP HN61 H N N 40 ADP HN62 H N N 41 ADP H2 H N N 42 ALA N N N N 43 ALA CA C N S 44 ALA C C N N 45 ALA O O N N 46 ALA CB C N N 47 ALA OXT O N N 48 ALA H H N N 49 ALA H2 H N N 50 ALA HA H N N 51 ALA HB1 H N N 52 ALA HB2 H N N 53 ALA HB3 H N N 54 ALA HXT H N N 55 ARG N N N N 56 ARG CA C N S 57 ARG C C N N 58 ARG O O N N 59 ARG CB C N N 60 ARG CG C N N 61 ARG CD C N N 62 ARG NE N N N 63 ARG CZ C N N 64 ARG NH1 N N N 65 ARG NH2 N N N 66 ARG OXT O N N 67 ARG H H N N 68 ARG H2 H N N 69 ARG HA H N N 70 ARG HB2 H N N 71 ARG HB3 H N N 72 ARG HG2 H N N 73 ARG HG3 H N N 74 ARG HD2 H N N 75 ARG HD3 H N N 76 ARG HE H N N 77 ARG HH11 H N N 78 ARG HH12 H N N 79 ARG HH21 H N N 80 ARG HH22 H N N 81 ARG HXT H N N 82 ASN N N N N 83 ASN CA C N S 84 ASN C C N N 85 ASN O O N N 86 ASN CB C N N 87 ASN CG C N N 88 ASN OD1 O N N 89 ASN ND2 N N N 90 ASN OXT O N N 91 ASN H H N N 92 ASN H2 H N N 93 ASN HA H N N 94 ASN HB2 H N N 95 ASN HB3 H N N 96 ASN HD21 H N N 97 ASN HD22 H N N 98 ASN HXT H N N 99 ASP N N N N 100 ASP CA C N S 101 ASP C C N N 102 ASP O O N N 103 ASP CB C N N 104 ASP CG C N N 105 ASP OD1 O N N 106 ASP OD2 O N N 107 ASP OXT O N N 108 ASP H H N N 109 ASP H2 H N N 110 ASP HA H N N 111 ASP HB2 H N N 112 ASP HB3 H N N 113 ASP HD2 H N N 114 ASP HXT H N N 115 CYS N N N N 116 CYS CA C N R 117 CYS C C N N 118 CYS O O N N 119 CYS CB C N N 120 CYS SG S N N 121 CYS OXT O N N 122 CYS H H N N 123 CYS H2 H N N 124 CYS HA H N N 125 CYS HB2 H N N 126 CYS HB3 H N N 127 CYS HG H N N 128 CYS HXT H N N 129 GLN N N N N 130 GLN CA C N S 131 GLN C C N N 132 GLN O O N N 133 GLN CB C N N 134 GLN CG C N N 135 GLN CD C N N 136 GLN OE1 O N N 137 GLN NE2 N N N 138 GLN OXT O N N 139 GLN H H N N 140 GLN H2 H N N 141 GLN HA H N N 142 GLN HB2 H N N 143 GLN HB3 H N N 144 GLN HG2 H N N 145 GLN HG3 H N N 146 GLN HE21 H N N 147 GLN HE22 H N N 148 GLN HXT H N N 149 GLU N N N N 150 GLU CA C N S 151 GLU C C N N 152 GLU O O N N 153 GLU CB C N N 154 GLU CG C N N 155 GLU CD C N N 156 GLU OE1 O N N 157 GLU OE2 O N N 158 GLU OXT O N N 159 GLU H H N N 160 GLU H2 H N N 161 GLU HA H N N 162 GLU HB2 H N N 163 GLU HB3 H N N 164 GLU HG2 H N N 165 GLU HG3 H N N 166 GLU HE2 H N N 167 GLU HXT H N N 168 GLY N N N N 169 GLY CA C N N 170 GLY C C N N 171 GLY O O N N 172 GLY OXT O N N 173 GLY H H N N 174 GLY H2 H N N 175 GLY HA2 H N N 176 GLY HA3 H N N 177 GLY HXT H N N 178 HIS N N N N 179 HIS CA C N S 180 HIS C C N N 181 HIS O O N N 182 HIS CB C N N 183 HIS CG C Y N 184 HIS ND1 N Y N 185 HIS CD2 C Y N 186 HIS CE1 C Y N 187 HIS NE2 N Y N 188 HIS OXT O N N 189 HIS H H N N 190 HIS H2 H N N 191 HIS HA H N N 192 HIS HB2 H N N 193 HIS HB3 H N N 194 HIS HD1 H N N 195 HIS HD2 H N N 196 HIS HE1 H N N 197 HIS HE2 H N N 198 HIS HXT H N N 199 HOH O O N N 200 HOH H1 H N N 201 HOH H2 H N N 202 ILE N N N N 203 ILE CA C N S 204 ILE C C N N 205 ILE O O N N 206 ILE CB C N S 207 ILE CG1 C N N 208 ILE CG2 C N N 209 ILE CD1 C N N 210 ILE OXT O N N 211 ILE H H N N 212 ILE H2 H N N 213 ILE HA H N N 214 ILE HB H N N 215 ILE HG12 H N N 216 ILE HG13 H N N 217 ILE HG21 H N N 218 ILE HG22 H N N 219 ILE HG23 H N N 220 ILE HD11 H N N 221 ILE HD12 H N N 222 ILE HD13 H N N 223 ILE HXT H N N 224 LEU N N N N 225 LEU CA C N S 226 LEU C C N N 227 LEU O O N N 228 LEU CB C N N 229 LEU CG C N N 230 LEU CD1 C N N 231 LEU CD2 C N N 232 LEU OXT O N N 233 LEU H H N N 234 LEU H2 H N N 235 LEU HA H N N 236 LEU HB2 H N N 237 LEU HB3 H N N 238 LEU HG H N N 239 LEU HD11 H N N 240 LEU HD12 H N N 241 LEU HD13 H N N 242 LEU HD21 H N N 243 LEU HD22 H N N 244 LEU HD23 H N N 245 LEU HXT H N N 246 LYS N N N N 247 LYS CA C N S 248 LYS C C N N 249 LYS O O N N 250 LYS CB C N N 251 LYS CG C N N 252 LYS CD C N N 253 LYS CE C N N 254 LYS NZ N N N 255 LYS OXT O N N 256 LYS H H N N 257 LYS H2 H N N 258 LYS HA H N N 259 LYS HB2 H N N 260 LYS HB3 H N N 261 LYS HG2 H N N 262 LYS HG3 H N N 263 LYS HD2 H N N 264 LYS HD3 H N N 265 LYS HE2 H N N 266 LYS HE3 H N N 267 LYS HZ1 H N N 268 LYS HZ2 H N N 269 LYS HZ3 H N N 270 LYS HXT H N N 271 MET N N N N 272 MET CA C N S 273 MET C C N N 274 MET O O N N 275 MET CB C N N 276 MET CG C N N 277 MET SD S N N 278 MET CE C N N 279 MET OXT O N N 280 MET H H N N 281 MET H2 H N N 282 MET HA H N N 283 MET HB2 H N N 284 MET HB3 H N N 285 MET HG2 H N N 286 MET HG3 H N N 287 MET HE1 H N N 288 MET HE2 H N N 289 MET HE3 H N N 290 MET HXT H N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TPO N N N N 363 TPO CA C N S 364 TPO CB C N R 365 TPO CG2 C N N 366 TPO OG1 O N N 367 TPO P P N N 368 TPO O1P O N N 369 TPO O2P O N N 370 TPO O3P O N N 371 TPO C C N N 372 TPO O O N N 373 TPO OXT O N N 374 TPO H H N N 375 TPO H2 H N N 376 TPO HA H N N 377 TPO HB H N N 378 TPO HG21 H N N 379 TPO HG22 H N N 380 TPO HG23 H N N 381 TPO HOP2 H N N 382 TPO HOP3 H N N 383 TPO HXT H N N 384 TRP N N N N 385 TRP CA C N S 386 TRP C C N N 387 TRP O O N N 388 TRP CB C N N 389 TRP CG C Y N 390 TRP CD1 C Y N 391 TRP CD2 C Y N 392 TRP NE1 N Y N 393 TRP CE2 C Y N 394 TRP CE3 C Y N 395 TRP CZ2 C Y N 396 TRP CZ3 C Y N 397 TRP CH2 C Y N 398 TRP OXT O N N 399 TRP H H N N 400 TRP H2 H N N 401 TRP HA H N N 402 TRP HB2 H N N 403 TRP HB3 H N N 404 TRP HD1 H N N 405 TRP HE1 H N N 406 TRP HE3 H N N 407 TRP HZ2 H N N 408 TRP HZ3 H N N 409 TRP HH2 H N N 410 TRP HXT H N N 411 TYR N N N N 412 TYR CA C N S 413 TYR C C N N 414 TYR O O N N 415 TYR CB C N N 416 TYR CG C Y N 417 TYR CD1 C Y N 418 TYR CD2 C Y N 419 TYR CE1 C Y N 420 TYR CE2 C Y N 421 TYR CZ C Y N 422 TYR OH O N N 423 TYR OXT O N N 424 TYR H H N N 425 TYR H2 H N N 426 TYR HA H N N 427 TYR HB2 H N N 428 TYR HB3 H N N 429 TYR HD1 H N N 430 TYR HD2 H N N 431 TYR HE1 H N N 432 TYR HE2 H N N 433 TYR HH H N N 434 TYR HXT H N N 435 VAL N N N N 436 VAL CA C N S 437 VAL C C N N 438 VAL O O N N 439 VAL CB C N N 440 VAL CG1 C N N 441 VAL CG2 C N N 442 VAL OXT O N N 443 VAL H H N N 444 VAL H2 H N N 445 VAL HA H N N 446 VAL HB H N N 447 VAL HG11 H N N 448 VAL HG12 H N N 449 VAL HG13 H N N 450 VAL HG21 H N N 451 VAL HG22 H N N 452 VAL HG23 H N N 453 VAL HXT H N N 454 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADP PB O1B doub N N 1 ADP PB O2B sing N N 2 ADP PB O3B sing N N 3 ADP PB O3A sing N N 4 ADP O2B HOB2 sing N N 5 ADP O3B HOB3 sing N N 6 ADP PA O1A doub N N 7 ADP PA O2A sing N N 8 ADP PA O3A sing N N 9 ADP PA "O5'" sing N N 10 ADP O2A HOA2 sing N N 11 ADP "O5'" "C5'" sing N N 12 ADP "C5'" "C4'" sing N N 13 ADP "C5'" "H5'1" sing N N 14 ADP "C5'" "H5'2" sing N N 15 ADP "C4'" "O4'" sing N N 16 ADP "C4'" "C3'" sing N N 17 ADP "C4'" "H4'" sing N N 18 ADP "O4'" "C1'" sing N N 19 ADP "C3'" "O3'" sing N N 20 ADP "C3'" "C2'" sing N N 21 ADP "C3'" "H3'" sing N N 22 ADP "O3'" "HO3'" sing N N 23 ADP "C2'" "O2'" sing N N 24 ADP "C2'" "C1'" sing N N 25 ADP "C2'" "H2'" sing N N 26 ADP "O2'" "HO2'" sing N N 27 ADP "C1'" N9 sing N N 28 ADP "C1'" "H1'" sing N N 29 ADP N9 C8 sing Y N 30 ADP N9 C4 sing Y N 31 ADP C8 N7 doub Y N 32 ADP C8 H8 sing N N 33 ADP N7 C5 sing Y N 34 ADP C5 C6 sing Y N 35 ADP C5 C4 doub Y N 36 ADP C6 N6 sing N N 37 ADP C6 N1 doub Y N 38 ADP N6 HN61 sing N N 39 ADP N6 HN62 sing N N 40 ADP N1 C2 sing Y N 41 ADP C2 N3 doub Y N 42 ADP C2 H2 sing N N 43 ADP N3 C4 sing Y N 44 ALA N CA sing N N 45 ALA N H sing N N 46 ALA N H2 sing N N 47 ALA CA C sing N N 48 ALA CA CB sing N N 49 ALA CA HA sing N N 50 ALA C O doub N N 51 ALA C OXT sing N N 52 ALA CB HB1 sing N N 53 ALA CB HB2 sing N N 54 ALA CB HB3 sing N N 55 ALA OXT HXT sing N N 56 ARG N CA sing N N 57 ARG N H sing N N 58 ARG N H2 sing N N 59 ARG CA C sing N N 60 ARG CA CB sing N N 61 ARG CA HA sing N N 62 ARG C O doub N N 63 ARG C OXT sing N N 64 ARG CB CG sing N N 65 ARG CB HB2 sing N N 66 ARG CB HB3 sing N N 67 ARG CG CD sing N N 68 ARG CG HG2 sing N N 69 ARG CG HG3 sing N N 70 ARG CD NE sing N N 71 ARG CD HD2 sing N N 72 ARG CD HD3 sing N N 73 ARG NE CZ sing N N 74 ARG NE HE sing N N 75 ARG CZ NH1 sing N N 76 ARG CZ NH2 doub N N 77 ARG NH1 HH11 sing N N 78 ARG NH1 HH12 sing N N 79 ARG NH2 HH21 sing N N 80 ARG NH2 HH22 sing N N 81 ARG OXT HXT sing N N 82 ASN N CA sing N N 83 ASN N H sing N N 84 ASN N H2 sing N N 85 ASN CA C sing N N 86 ASN CA CB sing N N 87 ASN CA HA sing N N 88 ASN C O doub N N 89 ASN C OXT sing N N 90 ASN CB CG sing N N 91 ASN CB HB2 sing N N 92 ASN CB HB3 sing N N 93 ASN CG OD1 doub N N 94 ASN CG ND2 sing N N 95 ASN ND2 HD21 sing N N 96 ASN ND2 HD22 sing N N 97 ASN OXT HXT sing N N 98 ASP N CA sing N N 99 ASP N H sing N N 100 ASP N H2 sing N N 101 ASP CA C sing N N 102 ASP CA CB sing N N 103 ASP CA HA sing N N 104 ASP C O doub N N 105 ASP C OXT sing N N 106 ASP CB CG sing N N 107 ASP CB HB2 sing N N 108 ASP CB HB3 sing N N 109 ASP CG OD1 doub N N 110 ASP CG OD2 sing N N 111 ASP OD2 HD2 sing N N 112 ASP OXT HXT sing N N 113 CYS N CA sing N N 114 CYS N H sing N N 115 CYS N H2 sing N N 116 CYS CA C sing N N 117 CYS CA CB sing N N 118 CYS CA HA sing N N 119 CYS C O doub N N 120 CYS C OXT sing N N 121 CYS CB SG sing N N 122 CYS CB HB2 sing N N 123 CYS CB HB3 sing N N 124 CYS SG HG sing N N 125 CYS OXT HXT sing N N 126 GLN N CA sing N N 127 GLN N H sing N N 128 GLN N H2 sing N N 129 GLN CA C sing N N 130 GLN CA CB sing N N 131 GLN CA HA sing N N 132 GLN C O doub N N 133 GLN C OXT sing N N 134 GLN CB CG sing N N 135 GLN CB HB2 sing N N 136 GLN CB HB3 sing N N 137 GLN CG CD sing N N 138 GLN CG HG2 sing N N 139 GLN CG HG3 sing N N 140 GLN CD OE1 doub N N 141 GLN CD NE2 sing N N 142 GLN NE2 HE21 sing N N 143 GLN NE2 HE22 sing N N 144 GLN OXT HXT sing N N 145 GLU N CA sing N N 146 GLU N H sing N N 147 GLU N H2 sing N N 148 GLU CA C sing N N 149 GLU CA CB sing N N 150 GLU CA HA sing N N 151 GLU C O doub N N 152 GLU C OXT sing N N 153 GLU CB CG sing N N 154 GLU CB HB2 sing N N 155 GLU CB HB3 sing N N 156 GLU CG CD sing N N 157 GLU CG HG2 sing N N 158 GLU CG HG3 sing N N 159 GLU CD OE1 doub N N 160 GLU CD OE2 sing N N 161 GLU OE2 HE2 sing N N 162 GLU OXT HXT sing N N 163 GLY N CA sing N N 164 GLY N H sing N N 165 GLY N H2 sing N N 166 GLY CA C sing N N 167 GLY CA HA2 sing N N 168 GLY CA HA3 sing N N 169 GLY C O doub N N 170 GLY C OXT sing N N 171 GLY OXT HXT sing N N 172 HIS N CA sing N N 173 HIS N H sing N N 174 HIS N H2 sing N N 175 HIS CA C sing N N 176 HIS CA CB sing N N 177 HIS CA HA sing N N 178 HIS C O doub N N 179 HIS C OXT sing N N 180 HIS CB CG sing N N 181 HIS CB HB2 sing N N 182 HIS CB HB3 sing N N 183 HIS CG ND1 sing Y N 184 HIS CG CD2 doub Y N 185 HIS ND1 CE1 doub Y N 186 HIS ND1 HD1 sing N N 187 HIS CD2 NE2 sing Y N 188 HIS CD2 HD2 sing N N 189 HIS CE1 NE2 sing Y N 190 HIS CE1 HE1 sing N N 191 HIS NE2 HE2 sing N N 192 HIS OXT HXT sing N N 193 HOH O H1 sing N N 194 HOH O H2 sing N N 195 ILE N CA sing N N 196 ILE N H sing N N 197 ILE N H2 sing N N 198 ILE CA C sing N N 199 ILE CA CB sing N N 200 ILE CA HA sing N N 201 ILE C O doub N N 202 ILE C OXT sing N N 203 ILE CB CG1 sing N N 204 ILE CB CG2 sing N N 205 ILE CB HB sing N N 206 ILE CG1 CD1 sing N N 207 ILE CG1 HG12 sing N N 208 ILE CG1 HG13 sing N N 209 ILE CG2 HG21 sing N N 210 ILE CG2 HG22 sing N N 211 ILE CG2 HG23 sing N N 212 ILE CD1 HD11 sing N N 213 ILE CD1 HD12 sing N N 214 ILE CD1 HD13 sing N N 215 ILE OXT HXT sing N N 216 LEU N CA sing N N 217 LEU N H sing N N 218 LEU N H2 sing N N 219 LEU CA C sing N N 220 LEU CA CB sing N N 221 LEU CA HA sing N N 222 LEU C O doub N N 223 LEU C OXT sing N N 224 LEU CB CG sing N N 225 LEU CB HB2 sing N N 226 LEU CB HB3 sing N N 227 LEU CG CD1 sing N N 228 LEU CG CD2 sing N N 229 LEU CG HG sing N N 230 LEU CD1 HD11 sing N N 231 LEU CD1 HD12 sing N N 232 LEU CD1 HD13 sing N N 233 LEU CD2 HD21 sing N N 234 LEU CD2 HD22 sing N N 235 LEU CD2 HD23 sing N N 236 LEU OXT HXT sing N N 237 LYS N CA sing N N 238 LYS N H sing N N 239 LYS N H2 sing N N 240 LYS CA C sing N N 241 LYS CA CB sing N N 242 LYS CA HA sing N N 243 LYS C O doub N N 244 LYS C OXT sing N N 245 LYS CB CG sing N N 246 LYS CB HB2 sing N N 247 LYS CB HB3 sing N N 248 LYS CG CD sing N N 249 LYS CG HG2 sing N N 250 LYS CG HG3 sing N N 251 LYS CD CE sing N N 252 LYS CD HD2 sing N N 253 LYS CD HD3 sing N N 254 LYS CE NZ sing N N 255 LYS CE HE2 sing N N 256 LYS CE HE3 sing N N 257 LYS NZ HZ1 sing N N 258 LYS NZ HZ2 sing N N 259 LYS NZ HZ3 sing N N 260 LYS OXT HXT sing N N 261 MET N CA sing N N 262 MET N H sing N N 263 MET N H2 sing N N 264 MET CA C sing N N 265 MET CA CB sing N N 266 MET CA HA sing N N 267 MET C O doub N N 268 MET C OXT sing N N 269 MET CB CG sing N N 270 MET CB HB2 sing N N 271 MET CB HB3 sing N N 272 MET CG SD sing N N 273 MET CG HG2 sing N N 274 MET CG HG3 sing N N 275 MET SD CE sing N N 276 MET CE HE1 sing N N 277 MET CE HE2 sing N N 278 MET CE HE3 sing N N 279 MET OXT HXT sing N N 280 PHE N CA sing N N 281 PHE N H sing N N 282 PHE N H2 sing N N 283 PHE CA C sing N N 284 PHE CA CB sing N N 285 PHE CA HA sing N N 286 PHE C O doub N N 287 PHE C OXT sing N N 288 PHE CB CG sing N N 289 PHE CB HB2 sing N N 290 PHE CB HB3 sing N N 291 PHE CG CD1 doub Y N 292 PHE CG CD2 sing Y N 293 PHE CD1 CE1 sing Y N 294 PHE CD1 HD1 sing N N 295 PHE CD2 CE2 doub Y N 296 PHE CD2 HD2 sing N N 297 PHE CE1 CZ doub Y N 298 PHE CE1 HE1 sing N N 299 PHE CE2 CZ sing Y N 300 PHE CE2 HE2 sing N N 301 PHE CZ HZ sing N N 302 PHE OXT HXT sing N N 303 PRO N CA sing N N 304 PRO N CD sing N N 305 PRO N H sing N N 306 PRO CA C sing N N 307 PRO CA CB sing N N 308 PRO CA HA sing N N 309 PRO C O doub N N 310 PRO C OXT sing N N 311 PRO CB CG sing N N 312 PRO CB HB2 sing N N 313 PRO CB HB3 sing N N 314 PRO CG CD sing N N 315 PRO CG HG2 sing N N 316 PRO CG HG3 sing N N 317 PRO CD HD2 sing N N 318 PRO CD HD3 sing N N 319 PRO OXT HXT sing N N 320 SER N CA sing N N 321 SER N H sing N N 322 SER N H2 sing N N 323 SER CA C sing N N 324 SER CA CB sing N N 325 SER CA HA sing N N 326 SER C O doub N N 327 SER C OXT sing N N 328 SER CB OG sing N N 329 SER CB HB2 sing N N 330 SER CB HB3 sing N N 331 SER OG HG sing N N 332 SER OXT HXT sing N N 333 THR N CA sing N N 334 THR N H sing N N 335 THR N H2 sing N N 336 THR CA C sing N N 337 THR CA CB sing N N 338 THR CA HA sing N N 339 THR C O doub N N 340 THR C OXT sing N N 341 THR CB OG1 sing N N 342 THR CB CG2 sing N N 343 THR CB HB sing N N 344 THR OG1 HG1 sing N N 345 THR CG2 HG21 sing N N 346 THR CG2 HG22 sing N N 347 THR CG2 HG23 sing N N 348 THR OXT HXT sing N N 349 TPO N CA sing N N 350 TPO N H sing N N 351 TPO N H2 sing N N 352 TPO CA CB sing N N 353 TPO CA C sing N N 354 TPO CA HA sing N N 355 TPO CB CG2 sing N N 356 TPO CB OG1 sing N N 357 TPO CB HB sing N N 358 TPO CG2 HG21 sing N N 359 TPO CG2 HG22 sing N N 360 TPO CG2 HG23 sing N N 361 TPO OG1 P sing N N 362 TPO P O1P doub N N 363 TPO P O2P sing N N 364 TPO P O3P sing N N 365 TPO O2P HOP2 sing N N 366 TPO O3P HOP3 sing N N 367 TPO C O doub N N 368 TPO C OXT sing N N 369 TPO OXT HXT sing N N 370 TRP N CA sing N N 371 TRP N H sing N N 372 TRP N H2 sing N N 373 TRP CA C sing N N 374 TRP CA CB sing N N 375 TRP CA HA sing N N 376 TRP C O doub N N 377 TRP C OXT sing N N 378 TRP CB CG sing N N 379 TRP CB HB2 sing N N 380 TRP CB HB3 sing N N 381 TRP CG CD1 doub Y N 382 TRP CG CD2 sing Y N 383 TRP CD1 NE1 sing Y N 384 TRP CD1 HD1 sing N N 385 TRP CD2 CE2 doub Y N 386 TRP CD2 CE3 sing Y N 387 TRP NE1 CE2 sing Y N 388 TRP NE1 HE1 sing N N 389 TRP CE2 CZ2 sing Y N 390 TRP CE3 CZ3 doub Y N 391 TRP CE3 HE3 sing N N 392 TRP CZ2 CH2 doub Y N 393 TRP CZ2 HZ2 sing N N 394 TRP CZ3 CH2 sing Y N 395 TRP CZ3 HZ3 sing N N 396 TRP CH2 HH2 sing N N 397 TRP OXT HXT sing N N 398 TYR N CA sing N N 399 TYR N H sing N N 400 TYR N H2 sing N N 401 TYR CA C sing N N 402 TYR CA CB sing N N 403 TYR CA HA sing N N 404 TYR C O doub N N 405 TYR C OXT sing N N 406 TYR CB CG sing N N 407 TYR CB HB2 sing N N 408 TYR CB HB3 sing N N 409 TYR CG CD1 doub Y N 410 TYR CG CD2 sing Y N 411 TYR CD1 CE1 sing Y N 412 TYR CD1 HD1 sing N N 413 TYR CD2 CE2 doub Y N 414 TYR CD2 HD2 sing N N 415 TYR CE1 CZ doub Y N 416 TYR CE1 HE1 sing N N 417 TYR CE2 CZ sing Y N 418 TYR CE2 HE2 sing N N 419 TYR CZ OH sing N N 420 TYR OH HH sing N N 421 TYR OXT HXT sing N N 422 VAL N CA sing N N 423 VAL N H sing N N 424 VAL N H2 sing N N 425 VAL CA C sing N N 426 VAL CA CB sing N N 427 VAL CA HA sing N N 428 VAL C O doub N N 429 VAL C OXT sing N N 430 VAL CB CG1 sing N N 431 VAL CB CG2 sing N N 432 VAL CB HB sing N N 433 VAL CG1 HG11 sing N N 434 VAL CG1 HG12 sing N N 435 VAL CG1 HG13 sing N N 436 VAL CG2 HG21 sing N N 437 VAL CG2 HG22 sing N N 438 VAL CG2 HG23 sing N N 439 VAL OXT HXT sing N N 440 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3D5V _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 3D5W _atom_sites.fract_transf_matrix[1][1] 0.007463 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007463 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007463 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_