data_3D62 # _entry.id 3D62 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3D62 RCSB RCSB047637 WWPDB D_1000047637 # _pdbx_database_status.entry_id 3D62 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-18 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bacha, U.' 1 'Barrila, J.' 2 'Gabelli, S.B.' 3 'Kiso, Y.' 4 'Amzel, L.M.' 5 'Freire, E.' 6 # _citation.id primary _citation.title 'Development of broad-spectrum halomethyl ketone inhibitors against coronavirus main protease 3CL(pro).' _citation.journal_abbrev 'Chem.Biol.Drug Des.' _citation.journal_volume 72 _citation.page_first 34 _citation.page_last 49 _citation.year 2008 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1747-0277 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18611220 _citation.pdbx_database_id_DOI 10.1111/j.1747-0285.2008.00679.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bacha, U.' 1 primary 'Barrila, J.' 2 primary 'Gabelli, S.B.' 3 primary 'Kiso, Y.' 4 primary 'Mario Amzel, L.' 5 primary 'Freire, E.' 6 # _cell.length_a 106.668 _cell.length_b 45.160 _cell.length_c 53.967 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3D62 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3D62 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 18 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3C-like proteinase' 33199.922 1 3.4.22.- ? 'sequence database residues 3243-3541' ? 2 non-polymer syn 'benzyl (2-oxopropyl)carbamate' 207.226 1 ? ? ? ? 3 water nat water 18.015 53 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '3CL-PRO, 3CLp' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSM QNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYM HHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL TQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS ; _entity_poly.pdbx_seq_one_letter_code_can ;FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSM QNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYM HHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL TQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PHE n 1 2 ARG n 1 3 LYS n 1 4 MET n 1 5 ALA n 1 6 PHE n 1 7 PRO n 1 8 SER n 1 9 GLY n 1 10 LYS n 1 11 VAL n 1 12 GLU n 1 13 GLY n 1 14 CYS n 1 15 MET n 1 16 VAL n 1 17 GLN n 1 18 VAL n 1 19 THR n 1 20 CYS n 1 21 GLY n 1 22 THR n 1 23 THR n 1 24 THR n 1 25 LEU n 1 26 ASN n 1 27 GLY n 1 28 LEU n 1 29 TRP n 1 30 LEU n 1 31 ASP n 1 32 ASP n 1 33 THR n 1 34 VAL n 1 35 TYR n 1 36 CYS n 1 37 PRO n 1 38 ARG n 1 39 HIS n 1 40 VAL n 1 41 ILE n 1 42 CYS n 1 43 THR n 1 44 ALA n 1 45 GLU n 1 46 ASP n 1 47 MET n 1 48 LEU n 1 49 ASN n 1 50 PRO n 1 51 ASN n 1 52 TYR n 1 53 GLU n 1 54 ASP n 1 55 LEU n 1 56 LEU n 1 57 ILE n 1 58 ARG n 1 59 LYS n 1 60 SER n 1 61 ASN n 1 62 HIS n 1 63 SER n 1 64 PHE n 1 65 LEU n 1 66 VAL n 1 67 GLN n 1 68 ALA n 1 69 GLY n 1 70 ASN n 1 71 VAL n 1 72 GLN n 1 73 LEU n 1 74 ARG n 1 75 VAL n 1 76 ILE n 1 77 GLY n 1 78 HIS n 1 79 SER n 1 80 MET n 1 81 GLN n 1 82 ASN n 1 83 CYS n 1 84 LEU n 1 85 LEU n 1 86 ARG n 1 87 LEU n 1 88 LYS n 1 89 VAL n 1 90 ASP n 1 91 THR n 1 92 SER n 1 93 ASN n 1 94 PRO n 1 95 LYS n 1 96 THR n 1 97 PRO n 1 98 LYS n 1 99 TYR n 1 100 LYS n 1 101 PHE n 1 102 VAL n 1 103 ARG n 1 104 ILE n 1 105 GLN n 1 106 PRO n 1 107 GLY n 1 108 GLN n 1 109 THR n 1 110 PHE n 1 111 SER n 1 112 VAL n 1 113 LEU n 1 114 ALA n 1 115 CYS n 1 116 TYR n 1 117 ASN n 1 118 GLY n 1 119 SER n 1 120 PRO n 1 121 SER n 1 122 GLY n 1 123 VAL n 1 124 TYR n 1 125 GLN n 1 126 CYS n 1 127 ALA n 1 128 MET n 1 129 ARG n 1 130 PRO n 1 131 ASN n 1 132 HIS n 1 133 THR n 1 134 ILE n 1 135 LYS n 1 136 GLY n 1 137 SER n 1 138 PHE n 1 139 LEU n 1 140 ASN n 1 141 GLY n 1 142 SER n 1 143 CYS n 1 144 GLY n 1 145 SER n 1 146 VAL n 1 147 GLY n 1 148 PHE n 1 149 ASN n 1 150 ILE n 1 151 ASP n 1 152 TYR n 1 153 ASP n 1 154 CYS n 1 155 VAL n 1 156 SER n 1 157 PHE n 1 158 CYS n 1 159 TYR n 1 160 MET n 1 161 HIS n 1 162 HIS n 1 163 MET n 1 164 GLU n 1 165 LEU n 1 166 PRO n 1 167 THR n 1 168 GLY n 1 169 VAL n 1 170 HIS n 1 171 ALA n 1 172 GLY n 1 173 THR n 1 174 ASP n 1 175 LEU n 1 176 GLU n 1 177 GLY n 1 178 LYS n 1 179 PHE n 1 180 TYR n 1 181 GLY n 1 182 PRO n 1 183 PHE n 1 184 VAL n 1 185 ASP n 1 186 ARG n 1 187 GLN n 1 188 THR n 1 189 ALA n 1 190 GLN n 1 191 ALA n 1 192 ALA n 1 193 GLY n 1 194 THR n 1 195 ASP n 1 196 THR n 1 197 THR n 1 198 ILE n 1 199 THR n 1 200 LEU n 1 201 ASN n 1 202 VAL n 1 203 LEU n 1 204 ALA n 1 205 TRP n 1 206 LEU n 1 207 TYR n 1 208 ALA n 1 209 ALA n 1 210 VAL n 1 211 ILE n 1 212 ASN n 1 213 GLY n 1 214 ASP n 1 215 ARG n 1 216 TRP n 1 217 PHE n 1 218 LEU n 1 219 ASN n 1 220 ARG n 1 221 PHE n 1 222 THR n 1 223 THR n 1 224 THR n 1 225 LEU n 1 226 ASN n 1 227 ASP n 1 228 PHE n 1 229 ASN n 1 230 LEU n 1 231 VAL n 1 232 ALA n 1 233 MET n 1 234 LYS n 1 235 TYR n 1 236 ASN n 1 237 TYR n 1 238 GLU n 1 239 PRO n 1 240 LEU n 1 241 THR n 1 242 GLN n 1 243 ASP n 1 244 HIS n 1 245 VAL n 1 246 ASP n 1 247 ILE n 1 248 LEU n 1 249 GLY n 1 250 PRO n 1 251 LEU n 1 252 SER n 1 253 ALA n 1 254 GLN n 1 255 THR n 1 256 GLY n 1 257 ILE n 1 258 ALA n 1 259 VAL n 1 260 LEU n 1 261 ASP n 1 262 MET n 1 263 CYS n 1 264 ALA n 1 265 ALA n 1 266 LEU n 1 267 LYS n 1 268 GLU n 1 269 LEU n 1 270 LEU n 1 271 GLN n 1 272 ASN n 1 273 GLY n 1 274 MET n 1 275 ASN n 1 276 GLY n 1 277 ARG n 1 278 THR n 1 279 ILE n 1 280 LEU n 1 281 GLY n 1 282 SER n 1 283 THR n 1 284 ILE n 1 285 LEU n 1 286 GLU n 1 287 ASP n 1 288 GLU n 1 289 PHE n 1 290 THR n 1 291 PRO n 1 292 PHE n 1 293 ASP n 1 294 VAL n 1 295 VAL n 1 296 ARG n 1 297 GLN n 1 298 CYS n 1 299 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene rep _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SARS coronavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 227859 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code R1AB_CVHSA _struct_ref.pdbx_db_accession P59641 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSM QNCLLRLKVDTSNPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYM HHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPL TQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQCS ; _struct_ref.pdbx_align_begin 3243 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D62 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 299 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P59641 _struct_ref_seq.db_align_beg 3243 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 3541 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 301 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 959 non-polymer . 'benzyl (2-oxopropyl)carbamate' ? 'C11 H13 N O3' 207.226 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3D62 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.7 M sodium malonate (pH 7.0), and 3-5% isopropanol, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-06-07 _diffrn_detector.details ;Monochromator:Si (111) channel cut monochromator; mirror: oxford Danfysik toroidal focusing mirror ; # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9537 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X6A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9537 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X6A # _reflns.entry_id 3D62 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 50.0 _reflns.number_all ? _reflns.number_obs 7556 _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.077 _reflns.pdbx_netI_over_sigmaI 11.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value 0.505 _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.number_unique_all 719 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D62 _refine.ls_d_res_high 2.700 _refine.ls_d_res_low 34.460 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.890 _refine.ls_number_reflns_obs 7510 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.264 _refine.ls_R_factor_R_work 0.259 _refine.ls_R_factor_R_free 0.363 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 372 _refine.B_iso_mean 37.002 _refine.aniso_B[1][1] -0.550 _refine.aniso_B[2][2] 1.860 _refine.aniso_B[3][3] -1.310 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.917 _refine.correlation_coeff_Fo_to_Fc_free 0.831 _refine.pdbx_overall_ESU_R_Free 0.578 _refine.overall_SU_ML 0.542 _refine.overall_SU_B 53.692 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2322 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 53 _refine_hist.number_atoms_total 2390 _refine_hist.d_res_high 2.700 _refine_hist.d_res_low 34.460 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2390 0.009 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3244 1.112 1.953 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 298 6.065 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 107 38.257 24.299 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 386 17.962 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12 18.738 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 365 0.074 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1823 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 1125 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1609 0.304 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 101 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 59 0.172 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 7 0.243 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1514 0.313 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2399 0.476 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 979 0.693 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 845 0.884 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.700 _refine_ls_shell.d_res_low 2.770 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.250 _refine_ls_shell.number_reflns_R_work 500 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.R_factor_R_free 0.497 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 531 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D62 _struct.title 'Development of Broad-Spectrum Halomethyl Ketone Inhibitors Against Coronavirus Main Protease 3CLpro' _struct.pdbx_descriptor '3C-like proteinase (E.C.3.4.22-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D62 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;main protease 3CLpro, SARS, inhibitor, 95990, ATP-binding, Endonuclease, Exonuclease, Helicase, Hydrolase, Membrane, Metal-binding, Nuclease, Nucleotide-binding, Nucleotidyltransferase, RNA replication, RNA-binding, RNA-directed RNA polymerase, Thiol protease, Transferase, Transmembrane, Zinc-finger ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? GLY A 13 ? SER A 10 GLY A 15 1 ? 6 HELX_P HELX_P2 2 PRO A 37 ? ILE A 41 ? PRO A 39 ILE A 43 5 ? 5 HELX_P HELX_P3 3 THR A 43 ? MET A 47 ? THR A 45 MET A 49 5 ? 5 HELX_P HELX_P4 4 ASN A 51 ? LYS A 59 ? ASN A 53 LYS A 61 1 ? 9 HELX_P HELX_P5 5 SER A 60 ? PHE A 64 ? SER A 62 PHE A 66 5 ? 5 HELX_P HELX_P6 6 ILE A 198 ? ASN A 212 ? ILE A 200 ASN A 214 1 ? 15 HELX_P HELX_P7 7 ASP A 227 ? TYR A 235 ? ASP A 229 TYR A 237 1 ? 9 HELX_P HELX_P8 8 THR A 241 ? ILE A 247 ? THR A 243 ILE A 249 1 ? 7 HELX_P HELX_P9 9 LEU A 248 ? GLY A 256 ? LEU A 250 GLY A 258 1 ? 9 HELX_P HELX_P10 10 ALA A 258 ? ASN A 272 ? ALA A 260 ASN A 274 1 ? 15 HELX_P HELX_P11 11 PRO A 291 ? ARG A 296 ? PRO A 293 ARG A 298 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 143 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id 959 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C16 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 959 _struct_conn.ptnr2_auth_seq_id 350 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.699 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id CYS _struct_mon_prot_cis.label_seq_id 298 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id CYS _struct_mon_prot_cis.auth_seq_id 300 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 SER _struct_mon_prot_cis.pdbx_label_seq_id_2 299 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 SER _struct_mon_prot_cis.pdbx_auth_seq_id_2 301 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.21 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 71 ? LEU A 73 ? VAL A 73 LEU A 75 A 2 LEU A 65 ? ALA A 68 ? LEU A 67 ALA A 70 A 3 MET A 15 ? CYS A 20 ? MET A 17 CYS A 22 A 4 THR A 23 ? LEU A 30 ? THR A 25 LEU A 32 A 5 THR A 33 ? TYR A 35 ? THR A 35 TYR A 37 A 6 LEU A 84 ? VAL A 89 ? LEU A 86 VAL A 91 A 7 VAL A 75 ? GLN A 81 ? VAL A 77 GLN A 83 B 1 TYR A 99 ? PHE A 101 ? TYR A 101 PHE A 103 B 2 CYS A 154 ? GLU A 164 ? CYS A 156 GLU A 166 B 3 VAL A 146 ? ASP A 151 ? VAL A 148 ASP A 153 B 4 THR A 109 ? CYS A 115 ? THR A 111 CYS A 117 B 5 PRO A 120 ? ALA A 127 ? PRO A 122 ALA A 129 C 1 TYR A 99 ? PHE A 101 ? TYR A 101 PHE A 103 C 2 CYS A 154 ? GLU A 164 ? CYS A 156 GLU A 166 C 3 HIS A 170 ? THR A 173 ? HIS A 172 THR A 175 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 73 ? O LEU A 75 N VAL A 66 ? N VAL A 68 A 2 3 O LEU A 65 ? O LEU A 67 N THR A 19 ? N THR A 21 A 3 4 N CYS A 20 ? N CYS A 22 O THR A 23 ? O THR A 25 A 4 5 N LEU A 28 ? N LEU A 30 O TYR A 35 ? O TYR A 37 A 5 6 N VAL A 34 ? N VAL A 36 O LEU A 87 ? O LEU A 89 A 6 7 O LEU A 84 ? O LEU A 86 N GLN A 81 ? N GLN A 83 B 1 2 N LYS A 100 ? N LYS A 102 O VAL A 155 ? O VAL A 157 B 2 3 O CYS A 158 ? O CYS A 160 N GLY A 147 ? N GLY A 149 B 3 4 O PHE A 148 ? O PHE A 150 N SER A 111 ? N SER A 113 B 4 5 N ALA A 114 ? N ALA A 116 O SER A 121 ? O SER A 123 C 1 2 N LYS A 100 ? N LYS A 102 O VAL A 155 ? O VAL A 157 C 2 3 N MET A 163 ? N MET A 165 O ALA A 171 ? O ALA A 173 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE 959 A 350' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 HIS A 39 ? HIS A 41 . ? 1_555 ? 2 AC1 8 MET A 47 ? MET A 49 . ? 1_555 ? 3 AC1 8 GLY A 141 ? GLY A 143 . ? 1_555 ? 4 AC1 8 CYS A 143 ? CYS A 145 . ? 1_555 ? 5 AC1 8 HIS A 162 ? HIS A 164 . ? 1_555 ? 6 AC1 8 MET A 163 ? MET A 165 . ? 1_555 ? 7 AC1 8 ARG A 186 ? ARG A 188 . ? 1_555 ? 8 AC1 8 GLN A 187 ? GLN A 189 . ? 1_555 ? # _atom_sites.entry_id 3D62 _atom_sites.fract_transf_matrix[1][1] 0.009375 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022143 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018530 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PHE 1 3 3 PHE PHE A . n A 1 2 ARG 2 4 4 ARG ARG A . n A 1 3 LYS 3 5 5 LYS LYS A . n A 1 4 MET 4 6 6 MET MET A . n A 1 5 ALA 5 7 7 ALA ALA A . n A 1 6 PHE 6 8 8 PHE PHE A . n A 1 7 PRO 7 9 9 PRO PRO A . n A 1 8 SER 8 10 10 SER SER A . n A 1 9 GLY 9 11 11 GLY GLY A . n A 1 10 LYS 10 12 12 LYS LYS A . n A 1 11 VAL 11 13 13 VAL VAL A . n A 1 12 GLU 12 14 14 GLU GLU A . n A 1 13 GLY 13 15 15 GLY GLY A . n A 1 14 CYS 14 16 16 CYS CYS A . n A 1 15 MET 15 17 17 MET MET A . n A 1 16 VAL 16 18 18 VAL VAL A . n A 1 17 GLN 17 19 19 GLN GLN A . n A 1 18 VAL 18 20 20 VAL VAL A . n A 1 19 THR 19 21 21 THR THR A . n A 1 20 CYS 20 22 22 CYS CYS A . n A 1 21 GLY 21 23 23 GLY GLY A . n A 1 22 THR 22 24 24 THR THR A . n A 1 23 THR 23 25 25 THR THR A . n A 1 24 THR 24 26 26 THR THR A . n A 1 25 LEU 25 27 27 LEU LEU A . n A 1 26 ASN 26 28 28 ASN ASN A . n A 1 27 GLY 27 29 29 GLY GLY A . n A 1 28 LEU 28 30 30 LEU LEU A . n A 1 29 TRP 29 31 31 TRP TRP A . n A 1 30 LEU 30 32 32 LEU LEU A . n A 1 31 ASP 31 33 33 ASP ASP A . n A 1 32 ASP 32 34 34 ASP ASP A . n A 1 33 THR 33 35 35 THR THR A . n A 1 34 VAL 34 36 36 VAL VAL A . n A 1 35 TYR 35 37 37 TYR TYR A . n A 1 36 CYS 36 38 38 CYS CYS A . n A 1 37 PRO 37 39 39 PRO PRO A . n A 1 38 ARG 38 40 40 ARG ARG A . n A 1 39 HIS 39 41 41 HIS HIS A . n A 1 40 VAL 40 42 42 VAL VAL A . n A 1 41 ILE 41 43 43 ILE ILE A . n A 1 42 CYS 42 44 44 CYS CYS A . n A 1 43 THR 43 45 45 THR THR A . n A 1 44 ALA 44 46 46 ALA ALA A . n A 1 45 GLU 45 47 47 GLU GLU A . n A 1 46 ASP 46 48 48 ASP ASP A . n A 1 47 MET 47 49 49 MET MET A . n A 1 48 LEU 48 50 50 LEU LEU A . n A 1 49 ASN 49 51 51 ASN ASN A . n A 1 50 PRO 50 52 52 PRO PRO A . n A 1 51 ASN 51 53 53 ASN ASN A . n A 1 52 TYR 52 54 54 TYR TYR A . n A 1 53 GLU 53 55 55 GLU GLU A . n A 1 54 ASP 54 56 56 ASP ASP A . n A 1 55 LEU 55 57 57 LEU LEU A . n A 1 56 LEU 56 58 58 LEU LEU A . n A 1 57 ILE 57 59 59 ILE ILE A . n A 1 58 ARG 58 60 60 ARG ARG A . n A 1 59 LYS 59 61 61 LYS LYS A . n A 1 60 SER 60 62 62 SER SER A . n A 1 61 ASN 61 63 63 ASN ASN A . n A 1 62 HIS 62 64 64 HIS HIS A . n A 1 63 SER 63 65 65 SER SER A . n A 1 64 PHE 64 66 66 PHE PHE A . n A 1 65 LEU 65 67 67 LEU LEU A . n A 1 66 VAL 66 68 68 VAL VAL A . n A 1 67 GLN 67 69 69 GLN GLN A . n A 1 68 ALA 68 70 70 ALA ALA A . n A 1 69 GLY 69 71 71 GLY GLY A . n A 1 70 ASN 70 72 72 ASN ASN A . n A 1 71 VAL 71 73 73 VAL VAL A . n A 1 72 GLN 72 74 74 GLN GLN A . n A 1 73 LEU 73 75 75 LEU LEU A . n A 1 74 ARG 74 76 76 ARG ARG A . n A 1 75 VAL 75 77 77 VAL VAL A . n A 1 76 ILE 76 78 78 ILE ILE A . n A 1 77 GLY 77 79 79 GLY GLY A . n A 1 78 HIS 78 80 80 HIS HIS A . n A 1 79 SER 79 81 81 SER SER A . n A 1 80 MET 80 82 82 MET MET A . n A 1 81 GLN 81 83 83 GLN GLN A . n A 1 82 ASN 82 84 84 ASN ASN A . n A 1 83 CYS 83 85 85 CYS CYS A . n A 1 84 LEU 84 86 86 LEU LEU A . n A 1 85 LEU 85 87 87 LEU LEU A . n A 1 86 ARG 86 88 88 ARG ARG A . n A 1 87 LEU 87 89 89 LEU LEU A . n A 1 88 LYS 88 90 90 LYS LYS A . n A 1 89 VAL 89 91 91 VAL VAL A . n A 1 90 ASP 90 92 92 ASP ASP A . n A 1 91 THR 91 93 93 THR THR A . n A 1 92 SER 92 94 94 SER SER A . n A 1 93 ASN 93 95 95 ASN ASN A . n A 1 94 PRO 94 96 96 PRO PRO A . n A 1 95 LYS 95 97 97 LYS LYS A . n A 1 96 THR 96 98 98 THR THR A . n A 1 97 PRO 97 99 99 PRO PRO A . n A 1 98 LYS 98 100 100 LYS LYS A . n A 1 99 TYR 99 101 101 TYR TYR A . n A 1 100 LYS 100 102 102 LYS LYS A . n A 1 101 PHE 101 103 103 PHE PHE A . n A 1 102 VAL 102 104 104 VAL VAL A . n A 1 103 ARG 103 105 105 ARG ARG A . n A 1 104 ILE 104 106 106 ILE ILE A . n A 1 105 GLN 105 107 107 GLN GLN A . n A 1 106 PRO 106 108 108 PRO PRO A . n A 1 107 GLY 107 109 109 GLY GLY A . n A 1 108 GLN 108 110 110 GLN GLN A . n A 1 109 THR 109 111 111 THR THR A . n A 1 110 PHE 110 112 112 PHE PHE A . n A 1 111 SER 111 113 113 SER SER A . n A 1 112 VAL 112 114 114 VAL VAL A . n A 1 113 LEU 113 115 115 LEU LEU A . n A 1 114 ALA 114 116 116 ALA ALA A . n A 1 115 CYS 115 117 117 CYS CYS A . n A 1 116 TYR 116 118 118 TYR TYR A . n A 1 117 ASN 117 119 119 ASN ASN A . n A 1 118 GLY 118 120 120 GLY GLY A . n A 1 119 SER 119 121 121 SER SER A . n A 1 120 PRO 120 122 122 PRO PRO A . n A 1 121 SER 121 123 123 SER SER A . n A 1 122 GLY 122 124 124 GLY GLY A . n A 1 123 VAL 123 125 125 VAL VAL A . n A 1 124 TYR 124 126 126 TYR TYR A . n A 1 125 GLN 125 127 127 GLN GLN A . n A 1 126 CYS 126 128 128 CYS CYS A . n A 1 127 ALA 127 129 129 ALA ALA A . n A 1 128 MET 128 130 130 MET MET A . n A 1 129 ARG 129 131 131 ARG ARG A . n A 1 130 PRO 130 132 132 PRO PRO A . n A 1 131 ASN 131 133 133 ASN ASN A . n A 1 132 HIS 132 134 134 HIS HIS A . n A 1 133 THR 133 135 135 THR THR A . n A 1 134 ILE 134 136 136 ILE ILE A . n A 1 135 LYS 135 137 137 LYS LYS A . n A 1 136 GLY 136 138 138 GLY GLY A . n A 1 137 SER 137 139 139 SER SER A . n A 1 138 PHE 138 140 140 PHE PHE A . n A 1 139 LEU 139 141 141 LEU LEU A . n A 1 140 ASN 140 142 142 ASN ASN A . n A 1 141 GLY 141 143 143 GLY GLY A . n A 1 142 SER 142 144 144 SER SER A . n A 1 143 CYS 143 145 145 CYS CYS A . n A 1 144 GLY 144 146 146 GLY GLY A . n A 1 145 SER 145 147 147 SER SER A . n A 1 146 VAL 146 148 148 VAL VAL A . n A 1 147 GLY 147 149 149 GLY GLY A . n A 1 148 PHE 148 150 150 PHE PHE A . n A 1 149 ASN 149 151 151 ASN ASN A . n A 1 150 ILE 150 152 152 ILE ILE A . n A 1 151 ASP 151 153 153 ASP ASP A . n A 1 152 TYR 152 154 154 TYR TYR A . n A 1 153 ASP 153 155 155 ASP ASP A . n A 1 154 CYS 154 156 156 CYS CYS A . n A 1 155 VAL 155 157 157 VAL VAL A . n A 1 156 SER 156 158 158 SER SER A . n A 1 157 PHE 157 159 159 PHE PHE A . n A 1 158 CYS 158 160 160 CYS CYS A . n A 1 159 TYR 159 161 161 TYR TYR A . n A 1 160 MET 160 162 162 MET MET A . n A 1 161 HIS 161 163 163 HIS HIS A . n A 1 162 HIS 162 164 164 HIS HIS A . n A 1 163 MET 163 165 165 MET MET A . n A 1 164 GLU 164 166 166 GLU GLU A . n A 1 165 LEU 165 167 167 LEU LEU A . n A 1 166 PRO 166 168 168 PRO PRO A . n A 1 167 THR 167 169 169 THR THR A . n A 1 168 GLY 168 170 170 GLY GLY A . n A 1 169 VAL 169 171 171 VAL VAL A . n A 1 170 HIS 170 172 172 HIS HIS A . n A 1 171 ALA 171 173 173 ALA ALA A . n A 1 172 GLY 172 174 174 GLY GLY A . n A 1 173 THR 173 175 175 THR THR A . n A 1 174 ASP 174 176 176 ASP ASP A . n A 1 175 LEU 175 177 177 LEU LEU A . n A 1 176 GLU 176 178 178 GLU GLU A . n A 1 177 GLY 177 179 179 GLY GLY A . n A 1 178 LYS 178 180 180 LYS LYS A . n A 1 179 PHE 179 181 181 PHE PHE A . n A 1 180 TYR 180 182 182 TYR TYR A . n A 1 181 GLY 181 183 183 GLY GLY A . n A 1 182 PRO 182 184 184 PRO PRO A . n A 1 183 PHE 183 185 185 PHE PHE A . n A 1 184 VAL 184 186 186 VAL VAL A . n A 1 185 ASP 185 187 187 ASP ASP A . n A 1 186 ARG 186 188 188 ARG ARG A . n A 1 187 GLN 187 189 189 GLN GLN A . n A 1 188 THR 188 190 190 THR THR A . n A 1 189 ALA 189 191 191 ALA ALA A . n A 1 190 GLN 190 192 192 GLN GLN A . n A 1 191 ALA 191 193 193 ALA ALA A . n A 1 192 ALA 192 194 194 ALA ALA A . n A 1 193 GLY 193 195 195 GLY GLY A . n A 1 194 THR 194 196 196 THR THR A . n A 1 195 ASP 195 197 197 ASP ASP A . n A 1 196 THR 196 198 198 THR THR A . n A 1 197 THR 197 199 199 THR THR A . n A 1 198 ILE 198 200 200 ILE ILE A . n A 1 199 THR 199 201 201 THR THR A . n A 1 200 LEU 200 202 202 LEU LEU A . n A 1 201 ASN 201 203 203 ASN ASN A . n A 1 202 VAL 202 204 204 VAL VAL A . n A 1 203 LEU 203 205 205 LEU LEU A . n A 1 204 ALA 204 206 206 ALA ALA A . n A 1 205 TRP 205 207 207 TRP TRP A . n A 1 206 LEU 206 208 208 LEU LEU A . n A 1 207 TYR 207 209 209 TYR TYR A . n A 1 208 ALA 208 210 210 ALA ALA A . n A 1 209 ALA 209 211 211 ALA ALA A . n A 1 210 VAL 210 212 212 VAL VAL A . n A 1 211 ILE 211 213 213 ILE ILE A . n A 1 212 ASN 212 214 214 ASN ASN A . n A 1 213 GLY 213 215 215 GLY GLY A . n A 1 214 ASP 214 216 216 ASP ASP A . n A 1 215 ARG 215 217 217 ARG ARG A . n A 1 216 TRP 216 218 218 TRP TRP A . n A 1 217 PHE 217 219 219 PHE PHE A . n A 1 218 LEU 218 220 220 LEU LEU A . n A 1 219 ASN 219 221 221 ASN ASN A . n A 1 220 ARG 220 222 222 ARG ARG A . n A 1 221 PHE 221 223 223 PHE PHE A . n A 1 222 THR 222 224 224 THR THR A . n A 1 223 THR 223 225 225 THR THR A . n A 1 224 THR 224 226 226 THR THR A . n A 1 225 LEU 225 227 227 LEU LEU A . n A 1 226 ASN 226 228 228 ASN ASN A . n A 1 227 ASP 227 229 229 ASP ASP A . n A 1 228 PHE 228 230 230 PHE PHE A . n A 1 229 ASN 229 231 231 ASN ASN A . n A 1 230 LEU 230 232 232 LEU LEU A . n A 1 231 VAL 231 233 233 VAL VAL A . n A 1 232 ALA 232 234 234 ALA ALA A . n A 1 233 MET 233 235 235 MET MET A . n A 1 234 LYS 234 236 236 LYS LYS A . n A 1 235 TYR 235 237 237 TYR TYR A . n A 1 236 ASN 236 238 238 ASN ASN A . n A 1 237 TYR 237 239 239 TYR TYR A . n A 1 238 GLU 238 240 240 GLU GLU A . n A 1 239 PRO 239 241 241 PRO PRO A . n A 1 240 LEU 240 242 242 LEU LEU A . n A 1 241 THR 241 243 243 THR THR A . n A 1 242 GLN 242 244 244 GLN GLN A . n A 1 243 ASP 243 245 245 ASP ASP A . n A 1 244 HIS 244 246 246 HIS HIS A . n A 1 245 VAL 245 247 247 VAL VAL A . n A 1 246 ASP 246 248 248 ASP ASP A . n A 1 247 ILE 247 249 249 ILE ILE A . n A 1 248 LEU 248 250 250 LEU LEU A . n A 1 249 GLY 249 251 251 GLY GLY A . n A 1 250 PRO 250 252 252 PRO PRO A . n A 1 251 LEU 251 253 253 LEU LEU A . n A 1 252 SER 252 254 254 SER SER A . n A 1 253 ALA 253 255 255 ALA ALA A . n A 1 254 GLN 254 256 256 GLN GLN A . n A 1 255 THR 255 257 257 THR THR A . n A 1 256 GLY 256 258 258 GLY GLY A . n A 1 257 ILE 257 259 259 ILE ILE A . n A 1 258 ALA 258 260 260 ALA ALA A . n A 1 259 VAL 259 261 261 VAL VAL A . n A 1 260 LEU 260 262 262 LEU LEU A . n A 1 261 ASP 261 263 263 ASP ASP A . n A 1 262 MET 262 264 264 MET MET A . n A 1 263 CYS 263 265 265 CYS CYS A . n A 1 264 ALA 264 266 266 ALA ALA A . n A 1 265 ALA 265 267 267 ALA ALA A . n A 1 266 LEU 266 268 268 LEU LEU A . n A 1 267 LYS 267 269 269 LYS LYS A . n A 1 268 GLU 268 270 270 GLU GLU A . n A 1 269 LEU 269 271 271 LEU LEU A . n A 1 270 LEU 270 272 272 LEU LEU A . n A 1 271 GLN 271 273 273 GLN GLN A . n A 1 272 ASN 272 274 274 ASN ASN A . n A 1 273 GLY 273 275 275 GLY GLY A . n A 1 274 MET 274 276 276 MET MET A . n A 1 275 ASN 275 277 277 ASN ASN A . n A 1 276 GLY 276 278 278 GLY GLY A . n A 1 277 ARG 277 279 279 ARG ARG A . n A 1 278 THR 278 280 280 THR THR A . n A 1 279 ILE 279 281 281 ILE ILE A . n A 1 280 LEU 280 282 282 LEU LEU A . n A 1 281 GLY 281 283 283 GLY GLY A . n A 1 282 SER 282 284 284 SER SER A . n A 1 283 THR 283 285 285 THR THR A . n A 1 284 ILE 284 286 286 ILE ILE A . n A 1 285 LEU 285 287 287 LEU LEU A . n A 1 286 GLU 286 288 288 GLU GLU A . n A 1 287 ASP 287 289 289 ASP ASP A . n A 1 288 GLU 288 290 290 GLU GLU A . n A 1 289 PHE 289 291 291 PHE PHE A . n A 1 290 THR 290 292 292 THR THR A . n A 1 291 PRO 291 293 293 PRO PRO A . n A 1 292 PHE 292 294 294 PHE PHE A . n A 1 293 ASP 293 295 295 ASP ASP A . n A 1 294 VAL 294 296 296 VAL VAL A . n A 1 295 VAL 295 297 297 VAL VAL A . n A 1 296 ARG 296 298 298 ARG ARG A . n A 1 297 GLN 297 299 299 GLN GLN A . n A 1 298 CYS 298 300 300 CYS CYS A . n A 1 299 SER 299 301 301 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 959 1 350 350 959 959 A . C 3 HOH 1 351 1 HOH HOH A . C 3 HOH 2 352 2 HOH HOH A . C 3 HOH 3 353 3 HOH HOH A . C 3 HOH 4 354 4 HOH HOH A . C 3 HOH 5 355 5 HOH HOH A . C 3 HOH 6 356 6 HOH HOH A . C 3 HOH 7 357 7 HOH HOH A . C 3 HOH 8 358 8 HOH HOH A . C 3 HOH 9 359 9 HOH HOH A . C 3 HOH 10 360 10 HOH HOH A . C 3 HOH 11 361 11 HOH HOH A . C 3 HOH 12 362 12 HOH HOH A . C 3 HOH 13 363 14 HOH HOH A . C 3 HOH 14 364 16 HOH HOH A . C 3 HOH 15 365 17 HOH HOH A . C 3 HOH 16 366 19 HOH HOH A . C 3 HOH 17 367 20 HOH HOH A . C 3 HOH 18 368 21 HOH HOH A . C 3 HOH 19 369 22 HOH HOH A . C 3 HOH 20 370 23 HOH HOH A . C 3 HOH 21 371 25 HOH HOH A . C 3 HOH 22 372 26 HOH HOH A . C 3 HOH 23 373 27 HOH HOH A . C 3 HOH 24 374 30 HOH HOH A . C 3 HOH 25 375 31 HOH HOH A . C 3 HOH 26 376 32 HOH HOH A . C 3 HOH 27 377 33 HOH HOH A . C 3 HOH 28 378 35 HOH HOH A . C 3 HOH 29 379 36 HOH HOH A . C 3 HOH 30 380 39 HOH HOH A . C 3 HOH 31 381 40 HOH HOH A . C 3 HOH 32 382 41 HOH HOH A . C 3 HOH 33 383 44 HOH HOH A . C 3 HOH 34 384 45 HOH HOH A . C 3 HOH 35 385 47 HOH HOH A . C 3 HOH 36 386 49 HOH HOH A . C 3 HOH 37 387 50 HOH HOH A . C 3 HOH 38 388 51 HOH HOH A . C 3 HOH 39 389 61 HOH HOH A . C 3 HOH 40 390 62 HOH HOH A . C 3 HOH 41 391 63 HOH HOH A . C 3 HOH 42 392 64 HOH HOH A . C 3 HOH 43 393 65 HOH HOH A . C 3 HOH 44 394 68 HOH HOH A . C 3 HOH 45 395 69 HOH HOH A . C 3 HOH 46 396 72 HOH HOH A . C 3 HOH 47 397 73 HOH HOH A . C 3 HOH 48 398 74 HOH HOH A . C 3 HOH 49 399 75 HOH HOH A . C 3 HOH 50 400 76 HOH HOH A . C 3 HOH 51 401 77 HOH HOH A . C 3 HOH 52 402 79 HOH HOH A . C 3 HOH 53 403 80 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2460 ? 1 MORE -10.3 ? 1 'SSA (A^2)' 25990 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 106.6680000000 0.0000000000 -1.0000000000 0.0000000000 45.1600000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-03-28 4 'Structure model' 1 3 2012-05-09 5 'Structure model' 1 4 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 5 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 3 DENZO . ? ? ? ? 'data reduction' ? ? ? 4 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 AMoRE . ? ? ? ? phasing ? ? ? 7 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CA A GLY 149 ? ? O A HOH 393 ? ? 2.05 2 1 O A ASN 119 ? ? N A SER 121 ? ? 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 33 ? ? 42.86 -132.42 2 1 ASP A 34 ? ? -94.91 38.82 3 1 LEU A 50 ? ? -54.25 -76.65 4 1 ASN A 53 ? ? -111.63 75.37 5 1 LEU A 67 ? ? -114.14 76.05 6 1 ASN A 84 ? ? 57.40 -115.50 7 1 THR A 93 ? ? 72.19 109.62 8 1 ASN A 119 ? ? 60.29 130.37 9 1 TYR A 154 ? ? 72.57 -92.82 10 1 ASP A 155 ? ? -159.67 31.65 11 1 CYS A 160 ? ? -141.10 -9.19 12 1 PRO A 168 ? ? -60.18 37.35 13 1 ASP A 187 ? ? -64.50 81.97 14 1 ALA A 191 ? ? -62.55 84.52 15 1 LEU A 227 ? ? 86.28 -38.33 16 1 MET A 276 ? ? 46.79 75.91 17 1 VAL A 296 ? ? -139.71 -48.82 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'benzyl (2-oxopropyl)carbamate' 959 3 water HOH #