HEADER HYDROLASE 18-MAY-08 3D63 TITLE CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.6.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: PPA, BURPS1710B_1237; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS STRUCTURAL GENOMICS, SSGCID, PYROPHOSPHATASE, HYDROLASE, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 21-FEB-24 3D63 1 SEQADV REVDAT 5 30-OCT-13 3D63 1 JRNL REVDAT 4 13-JUL-11 3D63 1 VERSN REVDAT 3 04-AUG-09 3D63 1 REMARK REVDAT 2 24-FEB-09 3D63 1 VERSN REVDAT 1 08-JUL-08 3D63 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33242 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2291 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.20000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : -0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.583 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4111 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2738 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5589 ; 1.700 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6743 ; 1.488 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 7.743 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;32.907 ;25.233 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;18.235 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.697 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4569 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 765 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2610 ; 0.710 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1050 ; 0.155 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4212 ; 1.307 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1501 ; 1.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1377 ; 2.836 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 174 5 REMARK 3 1 B 4 B 174 5 REMARK 3 1 C 4 C 174 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 993 ; 0.380 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 993 ; 0.300 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 C (A): 993 ; 0.510 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1172 ; 0.610 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 1172 ; 0.610 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 1172 ; 0.860 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 993 ; 0.420 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 993 ; 0.640 ; 2.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 993 ; 0.710 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1172 ; 0.540 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1172 ; 0.650 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 1172 ; 0.710 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37853 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 61.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : 0.11500 REMARK 200 FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : 0.55600 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM POTASSIUM PHOSPHATE PH 6.7, 49% REMARK 280 PEG 200, 12.3 MG/ML PROTEIN, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.94300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.94300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 41.94300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 61.00950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -71.77500 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 41.94300 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 61.00950 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 MET C -20 REMARK 465 HIS C -13 REMARK 465 MET C -12 REMARK 465 GLY C -11 REMARK 465 THR C -10 REMARK 465 LEU C -9 REMARK 465 GLU C -8 REMARK 465 ALA C -7 REMARK 465 GLN C -6 REMARK 465 THR C -5 REMARK 465 GLN C -4 REMARK 465 GLY C -3 REMARK 465 PRO C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 PHE C 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 145 CG CD1 CD2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 LYS C 35 CG CD CE NZ REMARK 470 LYS C 113 CG CD CE NZ REMARK 470 LEU C 145 CG CD1 CD2 REMARK 470 LYS C 147 CG CD CE NZ REMARK 470 LYS C 174 CG CD CE NZ REMARK 470 LYS C 175 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 99 NZ LYS A 143 2.04 REMARK 500 CE2 TYR C 130 OE1 GLN C 134 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 71 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 PRO C 110 C - N - CA ANGL. DEV. = -12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 80.77 -167.45 REMARK 500 LEU A 145 4.94 103.59 REMARK 500 ASP B 11 82.13 -154.91 REMARK 500 ALA B 24 151.01 -47.23 REMARK 500 ALA B 36 9.61 -64.01 REMARK 500 LEU B 37 -35.08 -146.07 REMARK 500 ASP B 43 -74.31 -80.62 REMARK 500 SER B 123 -177.79 -172.96 REMARK 500 ALA B 144 -61.40 50.91 REMARK 500 LEU B 145 -58.60 -144.83 REMARK 500 GLU B 146 114.16 -39.45 REMARK 500 LYS B 147 -129.44 49.38 REMARK 500 HIS C -18 -23.29 -170.01 REMARK 500 ASP C 11 76.06 -166.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 144 LEU B 145 -124.47 REMARK 500 ALA C -19 HIS C -18 -147.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.00023.A RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES ALA C(-19) TO HIS C(-14) THAT ARE PRESENT IN REMARK 999 COORDINATES, ARE THE FRAGMENT OF N-TERMINAL EXPRESSION REMARK 999 TAG THAT COULD BELONG TO EITHER CHAIN C OR CHAIN B. REMARK 999 THE CHAIN ID C HAS BEEN ASSIGNED FOR THIS FRAGMENT BASED REMARK 999 ONLY ON ITS PROXIMITY TO THAT CHAIN. THE UNCERTAINITY IN REMARK 999 CHAIN ID ASSIGNMENT IS DUE TO ABSENCE OF ELECTRON DENSITY REMARK 999 FOR RESIDUE (-13) AND FEW RESIDUES THAT FOLLOW. DBREF 3D63 A 1 175 UNP Q3JUV5 Q3JUV5_BURP1 1 175 DBREF 3D63 B 1 175 UNP Q3JUV5 Q3JUV5_BURP1 1 175 DBREF 3D63 C 1 175 UNP Q3JUV5 Q3JUV5_BURP1 1 175 SEQADV 3D63 MET A -20 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 ALA A -19 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS A -18 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS A -17 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS A -16 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS A -15 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS A -14 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS A -13 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 MET A -12 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY A -11 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 THR A -10 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 LEU A -9 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLU A -8 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 ALA A -7 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLN A -6 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 THR A -5 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLN A -4 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY A -3 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 PRO A -2 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY A -1 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 SER A 0 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 MET B -20 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 ALA B -19 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS B -18 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS B -17 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS B -16 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS B -15 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS B -14 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS B -13 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 MET B -12 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY B -11 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 THR B -10 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 LEU B -9 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLU B -8 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 ALA B -7 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLN B -6 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 THR B -5 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLN B -4 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY B -3 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 PRO B -2 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY B -1 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 SER B 0 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 MET C -20 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 ALA C -19 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS C -18 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS C -17 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS C -16 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS C -15 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS C -14 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 HIS C -13 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 MET C -12 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY C -11 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 THR C -10 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 LEU C -9 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLU C -8 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 ALA C -7 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLN C -6 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 THR C -5 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLN C -4 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY C -3 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 PRO C -2 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 GLY C -1 UNP Q3JUV5 EXPRESSION TAG SEQADV 3D63 SER C 0 UNP Q3JUV5 EXPRESSION TAG SEQRES 1 A 196 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 196 ALA GLN THR GLN GLY PRO GLY SER MET SER PHE SER ASN SEQRES 3 A 196 VAL PRO ALA GLY LYS ASP LEU PRO GLN ASP PHE ASN VAL SEQRES 4 A 196 ILE ILE GLU ILE PRO ALA GLN SER GLU PRO VAL LYS TYR SEQRES 5 A 196 GLU ALA ASP LYS ALA LEU GLY LEU LEU VAL VAL ASP ARG SEQRES 6 A 196 PHE ILE GLY THR GLY MET ARG TYR PRO VAL ASN TYR GLY SEQRES 7 A 196 PHE ILE PRO GLN THR LEU SER GLY ASP GLY ASP PRO VAL SEQRES 8 A 196 ASP VAL LEU VAL ILE THR PRO PHE PRO LEU LEU ALA GLY SEQRES 9 A 196 SER VAL VAL ARG ALA ARG ALA LEU GLY MET LEU LYS MET SEQRES 10 A 196 THR ASP GLU SER GLY VAL ASP ALA LYS LEU VAL ALA VAL SEQRES 11 A 196 PRO HIS ASP LYS VAL CYS PRO MET THR ALA ASN LEU LYS SEQRES 12 A 196 SER ILE ASP ASP VAL PRO ALA TYR LEU LYS ASP GLN ILE SEQRES 13 A 196 LYS HIS PHE PHE GLU GLN TYR LYS ALA LEU GLU LYS GLY SEQRES 14 A 196 LYS TRP VAL LYS VAL GLU GLY TRP ASP GLY ILE ASP ALA SEQRES 15 A 196 ALA HIS LYS GLU ILE THR ASP GLY VAL ALA ASN PHE LYS SEQRES 16 A 196 LYS SEQRES 1 B 196 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 196 ALA GLN THR GLN GLY PRO GLY SER MET SER PHE SER ASN SEQRES 3 B 196 VAL PRO ALA GLY LYS ASP LEU PRO GLN ASP PHE ASN VAL SEQRES 4 B 196 ILE ILE GLU ILE PRO ALA GLN SER GLU PRO VAL LYS TYR SEQRES 5 B 196 GLU ALA ASP LYS ALA LEU GLY LEU LEU VAL VAL ASP ARG SEQRES 6 B 196 PHE ILE GLY THR GLY MET ARG TYR PRO VAL ASN TYR GLY SEQRES 7 B 196 PHE ILE PRO GLN THR LEU SER GLY ASP GLY ASP PRO VAL SEQRES 8 B 196 ASP VAL LEU VAL ILE THR PRO PHE PRO LEU LEU ALA GLY SEQRES 9 B 196 SER VAL VAL ARG ALA ARG ALA LEU GLY MET LEU LYS MET SEQRES 10 B 196 THR ASP GLU SER GLY VAL ASP ALA LYS LEU VAL ALA VAL SEQRES 11 B 196 PRO HIS ASP LYS VAL CYS PRO MET THR ALA ASN LEU LYS SEQRES 12 B 196 SER ILE ASP ASP VAL PRO ALA TYR LEU LYS ASP GLN ILE SEQRES 13 B 196 LYS HIS PHE PHE GLU GLN TYR LYS ALA LEU GLU LYS GLY SEQRES 14 B 196 LYS TRP VAL LYS VAL GLU GLY TRP ASP GLY ILE ASP ALA SEQRES 15 B 196 ALA HIS LYS GLU ILE THR ASP GLY VAL ALA ASN PHE LYS SEQRES 16 B 196 LYS SEQRES 1 C 196 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 C 196 ALA GLN THR GLN GLY PRO GLY SER MET SER PHE SER ASN SEQRES 3 C 196 VAL PRO ALA GLY LYS ASP LEU PRO GLN ASP PHE ASN VAL SEQRES 4 C 196 ILE ILE GLU ILE PRO ALA GLN SER GLU PRO VAL LYS TYR SEQRES 5 C 196 GLU ALA ASP LYS ALA LEU GLY LEU LEU VAL VAL ASP ARG SEQRES 6 C 196 PHE ILE GLY THR GLY MET ARG TYR PRO VAL ASN TYR GLY SEQRES 7 C 196 PHE ILE PRO GLN THR LEU SER GLY ASP GLY ASP PRO VAL SEQRES 8 C 196 ASP VAL LEU VAL ILE THR PRO PHE PRO LEU LEU ALA GLY SEQRES 9 C 196 SER VAL VAL ARG ALA ARG ALA LEU GLY MET LEU LYS MET SEQRES 10 C 196 THR ASP GLU SER GLY VAL ASP ALA LYS LEU VAL ALA VAL SEQRES 11 C 196 PRO HIS ASP LYS VAL CYS PRO MET THR ALA ASN LEU LYS SEQRES 12 C 196 SER ILE ASP ASP VAL PRO ALA TYR LEU LYS ASP GLN ILE SEQRES 13 C 196 LYS HIS PHE PHE GLU GLN TYR LYS ALA LEU GLU LYS GLY SEQRES 14 C 196 LYS TRP VAL LYS VAL GLU GLY TRP ASP GLY ILE ASP ALA SEQRES 15 C 196 ALA HIS LYS GLU ILE THR ASP GLY VAL ALA ASN PHE LYS SEQRES 16 C 196 LYS FORMUL 4 HOH *240(H2 O) HELIX 1 1 SER A 123 VAL A 127 5 5 HELIX 2 2 PRO A 128 LYS A 143 1 16 HELIX 3 3 GLY A 158 PHE A 173 1 16 HELIX 4 4 CYS B 115 ALA B 119 5 5 HELIX 5 5 SER B 123 VAL B 127 5 5 HELIX 6 6 PRO B 128 LYS B 143 1 16 HELIX 7 7 GLY B 158 PHE B 173 1 16 HELIX 8 8 CYS C 115 ALA C 119 5 5 HELIX 9 9 PRO C 128 TYR C 142 1 15 HELIX 10 10 GLY C 158 PHE C 173 1 16 SHEET 1 A 7 VAL A 151 ASP A 157 0 SHEET 2 A 7 VAL A 85 ASP A 98 -1 N THR A 97 O LYS A 152 SHEET 3 A 7 GLY A 101 PRO A 110 -1 O GLY A 101 N ASP A 98 SHEET 4 A 7 ASP A 71 VAL A 74 1 N LEU A 73 O LEU A 106 SHEET 5 A 7 ASN A 55 PHE A 58 -1 N GLY A 57 O VAL A 72 SHEET 6 A 7 PHE A 16 ILE A 22 -1 N GLU A 21 O TYR A 56 SHEET 7 A 7 VAL A 85 ASP A 98 -1 O ALA A 88 N PHE A 16 SHEET 1 B 2 VAL A 29 ASP A 34 0 SHEET 2 B 2 LEU A 39 PHE A 45 -1 O LEU A 39 N ASP A 34 SHEET 1 C 7 VAL B 151 ASP B 157 0 SHEET 2 C 7 VAL B 85 ASP B 98 -1 N LYS B 95 O GLY B 155 SHEET 3 C 7 GLY B 101 PRO B 110 -1 O GLY B 101 N ASP B 98 SHEET 4 C 7 ASP B 71 VAL B 74 1 N LEU B 73 O LEU B 106 SHEET 5 C 7 ASN B 55 PHE B 58 -1 N GLY B 57 O VAL B 72 SHEET 6 C 7 PHE B 16 ILE B 22 -1 N ILE B 22 O TYR B 56 SHEET 7 C 7 VAL B 85 ASP B 98 -1 O ALA B 88 N PHE B 16 SHEET 1 D 2 VAL B 29 ASP B 34 0 SHEET 2 D 2 LEU B 39 PHE B 45 -1 O ARG B 44 N LYS B 30 SHEET 1 E 7 VAL C 151 ASP C 157 0 SHEET 2 E 7 VAL C 85 ASP C 98 -1 N MET C 93 O ASP C 157 SHEET 3 E 7 GLY C 101 PRO C 110 -1 O GLY C 101 N ASP C 98 SHEET 4 E 7 VAL C 70 VAL C 74 1 N LEU C 73 O LEU C 106 SHEET 5 E 7 ASN C 55 ILE C 59 -1 N GLY C 57 O VAL C 72 SHEET 6 E 7 PHE C 16 ILE C 22 -1 N GLU C 21 O TYR C 56 SHEET 7 E 7 VAL C 85 ASP C 98 -1 O ALA C 88 N PHE C 16 SHEET 1 F 2 VAL C 29 ASP C 34 0 SHEET 2 F 2 LEU C 39 PHE C 45 -1 O ARG C 44 N LYS C 30 CISPEP 1 LEU A 12 PRO A 13 0 5.52 CISPEP 2 LEU B 12 PRO B 13 0 5.15 CISPEP 3 LEU C 12 PRO C 13 0 3.54 CRYST1 83.886 122.019 71.775 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011921 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013932 0.00000