HEADER IMMUNE SYSTEM 19-MAY-08 3D6G TITLE FC FRAGMENT OF IGG1 (HERCEPTIN) WITH PROTEIN-A MIMETIC PEPTIDE TITLE 2 DENDRIMER LIGAND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG GAMMA-1 CHAIN C REGION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FC FRAGMENT; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 STRAIN: HUMAN; SOURCE 6 GENE: IGHG1; SOURCE 7 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 10 EXPRESSION_SYSTEM_CELL: CHO KEYWDS FC FRAGMENT, IGG1, GLYCOSILATED PROTEIN, PROTEIN A MIMETIC PEPTIDE KEYWDS 2 DENDRIMER LIGAND, GLYCOPROTEIN, IMMUNOGLOBULIN C REGION, KEYWDS 3 IMMUNOGLOBULIN DOMAIN, SECRETED, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.D.BUJACZ,I.REDZYNIA,G.D.BUJACZ,F.DINON,P.PENGO,G.FASSINA REVDAT 5 01-NOV-23 3D6G 1 HETSYN LINK REVDAT 4 29-JUL-20 3D6G 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 25-DEC-19 3D6G 1 JRNL REMARK LINK REVDAT 2 13-JUL-11 3D6G 1 VERSN REVDAT 1 16-JUN-09 3D6G 0 JRNL AUTH D.MOIANI,M.SALVALAGLIO,C.CAVALLOTTI,A.BUJACZ,I.REDZYNIA, JRNL AUTH 2 G.BUJACZ,F.DINON,P.PENGO,G.FASSINA JRNL TITL STRUCTURAL CHARACTERIZATION OF A PROTEIN A MIMETIC PEPTIDE JRNL TITL 2 DENDRIMER BOUND TO HUMAN IGG. JRNL REF J.PHYS.CHEM.B V. 113 16268 2009 JRNL REFN ISSN 1089-5647 JRNL PMID 19924842 JRNL DOI 10.1021/JP909405B REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 24234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1731 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3343 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 350 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 56.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.17000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : 1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.306 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3857 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5283 ; 1.860 ; 2.081 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 429 ; 6.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;39.544 ;24.873 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;16.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2832 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1592 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2546 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 282 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.198 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2209 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3519 ; 1.141 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1866 ; 1.894 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1757 ; 2.743 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): 41.6936 25.6700 81.3483 REMARK 3 T TENSOR REMARK 3 T11: -0.2096 T22: -0.2669 REMARK 3 T33: -0.1441 T12: -0.0360 REMARK 3 T13: 0.0349 T23: -0.0739 REMARK 3 L TENSOR REMARK 3 L11: 4.1100 L22: 1.7429 REMARK 3 L33: 6.4834 L12: 0.0376 REMARK 3 L13: 2.2312 L23: 1.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.0943 S12: 0.4022 S13: -0.2554 REMARK 3 S21: -0.2153 S22: 0.0492 S23: -0.1156 REMARK 3 S31: 0.1338 S32: -0.0306 S33: -0.1435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 445 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6234 32.5565 111.4685 REMARK 3 T TENSOR REMARK 3 T11: -0.1387 T22: 0.0300 REMARK 3 T33: -0.1522 T12: 0.1496 REMARK 3 T13: -0.0058 T23: 0.1288 REMARK 3 L TENSOR REMARK 3 L11: 6.0380 L22: 2.4500 REMARK 3 L33: 2.6534 L12: -0.6134 REMARK 3 L13: -0.7081 L23: 0.3558 REMARK 3 S TENSOR REMARK 3 S11: -0.1997 S12: -1.1982 S13: -0.6072 REMARK 3 S21: 0.5073 S22: 0.3051 S23: 0.1749 REMARK 3 S31: 0.3770 S32: 0.0385 S33: -0.1053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 236 B 340 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7655 51.4687 77.8752 REMARK 3 T TENSOR REMARK 3 T11: 0.8615 T22: -0.1168 REMARK 3 T33: -0.1393 T12: -0.1120 REMARK 3 T13: -0.0389 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 4.7856 L22: 5.5875 REMARK 3 L33: 7.0836 L12: 0.5201 REMARK 3 L13: -3.3955 L23: -0.0921 REMARK 3 S TENSOR REMARK 3 S11: -0.1966 S12: 0.6935 S13: 0.3526 REMARK 3 S21: -2.2436 S22: 0.1248 S23: -0.0647 REMARK 3 S31: -0.5362 S32: 0.1305 S33: 0.0719 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 341 B 444 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6291 46.9264 109.7316 REMARK 3 T TENSOR REMARK 3 T11: -0.2531 T22: -0.1089 REMARK 3 T33: -0.1945 T12: 0.0753 REMARK 3 T13: 0.0125 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 5.5009 L22: 3.4664 REMARK 3 L33: 3.6541 L12: 0.4347 REMARK 3 L13: 1.4832 L23: 1.7710 REMARK 3 S TENSOR REMARK 3 S11: -0.2256 S12: -0.8477 S13: 0.4377 REMARK 3 S21: 0.3229 S22: 0.1247 S23: 0.0633 REMARK 3 S31: -0.0279 S32: 0.1930 S33: 0.1009 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 8 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1296 29.6261 81.3565 REMARK 3 T TENSOR REMARK 3 T11: -0.1752 T22: 0.1654 REMARK 3 T33: -0.1523 T12: -0.0044 REMARK 3 T13: 0.0809 T23: -0.0832 REMARK 3 L TENSOR REMARK 3 L11: 9.3959 L22: 11.9738 REMARK 3 L33: 22.2016 L12: -6.0085 REMARK 3 L13: 1.8089 L23: -5.6242 REMARK 3 S TENSOR REMARK 3 S11: 0.1372 S12: -0.6173 S13: 0.1285 REMARK 3 S21: 0.1400 S22: -0.0510 S23: 0.2535 REMARK 3 S31: -0.5135 S32: -0.7449 S33: -0.0862 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 8 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0779 45.3183 81.5195 REMARK 3 T TENSOR REMARK 3 T11: 0.7213 T22: 0.2131 REMARK 3 T33: 0.0443 T12: -0.0294 REMARK 3 T13: 0.3358 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 13.8983 L22: 17.6839 REMARK 3 L33: 8.0075 L12: -13.1490 REMARK 3 L13: -4.2289 L23: 3.1703 REMARK 3 S TENSOR REMARK 3 S11: -0.1419 S12: 0.4685 S13: 0.1363 REMARK 3 S21: -1.2704 S22: 0.6373 S23: -0.6536 REMARK 3 S31: -1.2371 S32: 0.3365 S33: -0.4954 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 446 B 446 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4916 66.4086 94.5100 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1104 REMARK 3 T33: 0.2597 T12: 0.0468 REMARK 3 T13: 0.0207 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 8.0344 L22: 17.9342 REMARK 3 L33: 5.0870 L12: -8.1555 REMARK 3 L13: 1.9400 L23: 4.7087 REMARK 3 S TENSOR REMARK 3 S11: 0.8156 S12: -0.6445 S13: 0.4565 REMARK 3 S21: -0.8268 S22: -0.8977 S23: 1.3754 REMARK 3 S31: -0.6162 S32: 0.7520 S33: 0.0821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8162 REMARK 200 MONOCHROMATOR : SI[111] HORIZONTALLY FOCUSSING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : SI[111] HORIZONTALLY FOCUSSING REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25480 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1HZH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-20% PEG 20K, 0.1M MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.88900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.61150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.57750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.61150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.88900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.57750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 445 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C6 NAG C 1 C1 FUC C 8 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 434 18.07 57.95 REMARK 500 PRO B 238 -169.33 -55.88 REMARK 500 ASN B 434 28.66 48.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HZH RELATED DB: PDB REMARK 900 THE INTACT HUMAN IGG1 WHICH IS COMPOSED OF TWO FAB AND ONE FC REMARK 900 FRAGMENTS REMARK 900 RELATED ID: 1L6X RELATED DB: PDB REMARK 900 THE HUMAN FC FRAGMENT COMPLEXED WITH MINIMIZED B-DOMAIN PEPTIDE OF REMARK 900 PROTEIN A REMARK 900 RELATED ID: 2DTQ RELATED DB: PDB REMARK 900 FUCOSYLATED FC FRAGMENT FROM HUMAN IMMUNOGLOBULIN G1 DBREF 3D6G A 236 445 UNP P01857 IGHG1_HUMAN 119 328 DBREF 3D6G B 236 445 UNP P01857 IGHG1_HUMAN 119 328 SEQRES 1 A 210 GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS SEQRES 2 A 210 ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS SEQRES 3 A 210 VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS SEQRES 4 A 210 PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA SEQRES 5 A 210 LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR SEQRES 6 A 210 ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP SEQRES 7 A 210 LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS SEQRES 8 A 210 ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA SEQRES 9 A 210 LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO SEQRES 10 A 210 PRO SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU SEQRES 11 A 210 THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA SEQRES 12 A 210 VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR SEQRES 13 A 210 LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE SEQRES 14 A 210 PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP SEQRES 15 A 210 GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU SEQRES 16 A 210 ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SEQRES 17 A 210 SER PRO SEQRES 1 B 210 GLY GLY PRO SER VAL PHE LEU PHE PRO PRO LYS PRO LYS SEQRES 2 B 210 ASP THR LEU MET ILE SER ARG THR PRO GLU VAL THR CYS SEQRES 3 B 210 VAL VAL VAL ASP VAL SER HIS GLU ASP PRO GLU VAL LYS SEQRES 4 B 210 PHE ASN TRP TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA SEQRES 5 B 210 LYS THR LYS PRO ARG GLU GLU GLN TYR ASN SER THR TYR SEQRES 6 B 210 ARG VAL VAL SER VAL LEU THR VAL LEU HIS GLN ASP TRP SEQRES 7 B 210 LEU ASN GLY LYS GLU TYR LYS CYS LYS VAL SER ASN LYS SEQRES 8 B 210 ALA LEU PRO ALA PRO ILE GLU LYS THR ILE SER LYS ALA SEQRES 9 B 210 LYS GLY GLN PRO ARG GLU PRO GLN VAL TYR THR LEU PRO SEQRES 10 B 210 PRO SER ARG ASP GLU LEU THR LYS ASN GLN VAL SER LEU SEQRES 11 B 210 THR CYS LEU VAL LYS GLY PHE TYR PRO SER ASP ILE ALA SEQRES 12 B 210 VAL GLU TRP GLU SER ASN GLY GLN PRO GLU ASN ASN TYR SEQRES 13 B 210 LYS THR THR PRO PRO VAL LEU ASP SER ASP GLY SER PHE SEQRES 14 B 210 PHE LEU TYR SER LYS LEU THR VAL ASP LYS SER ARG TRP SEQRES 15 B 210 GLN GLN GLY ASN VAL PHE SER CYS SER VAL MET HIS GLU SEQRES 16 B 210 ALA LEU HIS ASN HIS TYR THR GLN LYS SER LEU SER LEU SEQRES 17 B 210 SER PRO MODRES 3D6G ASN A 297 ASN GLYCOSYLATION SITE MODRES 3D6G ASN B 297 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG C 5 14 HET MAN C 6 11 HET NAG C 7 14 HET FUC C 8 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG D 5 14 HET MAN D 6 11 HET NAG D 7 14 HET FUC D 8 10 HET X12 B 446 152 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM X12 2-[[(2S)-2,6-BIS[[(2S)-2,6-BIS[[(2R)-2-[[(2R,3R)-2- HETNAM 2 X12 [[(2R)-2-AMINO-5-CARBAMIMIDAMIDO-PENTANOYL]AMINO]-3- HETNAM 3 X12 HYDROXY-BUTANOYL]AMINO]-3-(4-HYDROXYPHENYL) HETNAM 4 X12 PROPANOYL]AMINO]HEXANOYL]AMINO]HEXANOYL]AMINO]ETHANOIC HETNAM 5 X12 ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 5 X12 C96 H153 N31 O25 FORMUL 6 HOH *268(H2 O) HELIX 1 1 LYS A 246 MET A 252 1 7 HELIX 2 2 LEU A 309 ASN A 315 1 7 HELIX 3 3 SER A 354 LEU A 358 5 5 HELIX 4 4 LYS A 414 GLN A 419 1 6 HELIX 5 5 LEU A 432 TYR A 436 5 5 HELIX 6 6 LYS B 246 MET B 252 1 7 HELIX 7 7 LEU B 309 ASN B 315 1 7 HELIX 8 8 SER B 354 LYS B 360 5 7 HELIX 9 9 LYS B 414 GLY B 420 1 7 HELIX 10 10 LEU B 432 ASN B 434 5 3 SHEET 1 A 4 SER A 239 PHE A 243 0 SHEET 2 A 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 A 4 TYR A 300 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 A 4 LYS A 288 THR A 289 -1 N LYS A 288 O VAL A 305 SHEET 1 B 4 SER A 239 PHE A 243 0 SHEET 2 B 4 GLU A 258 VAL A 266 -1 O VAL A 262 N PHE A 241 SHEET 3 B 4 TYR A 300 THR A 307 -1 O VAL A 302 N VAL A 263 SHEET 4 B 4 GLU A 293 GLU A 294 -1 N GLU A 293 O ARG A 301 SHEET 1 C 4 VAL A 282 VAL A 284 0 SHEET 2 C 4 VAL A 273 VAL A 279 -1 N TRP A 277 O VAL A 284 SHEET 3 C 4 TYR A 319 ASN A 325 -1 O LYS A 322 N ASN A 276 SHEET 4 C 4 ILE A 332 ILE A 336 -1 O ILE A 332 N VAL A 323 SHEET 1 D 4 GLN A 347 LEU A 351 0 SHEET 2 D 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 D 4 PHE A 404 ASP A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 D 4 TYR A 391 THR A 393 -1 N LYS A 392 O LYS A 409 SHEET 1 E 4 GLN A 347 LEU A 351 0 SHEET 2 E 4 GLN A 362 PHE A 372 -1 O LEU A 368 N TYR A 349 SHEET 3 E 4 PHE A 404 ASP A 413 -1 O VAL A 412 N VAL A 363 SHEET 4 E 4 VAL A 397 LEU A 398 -1 N VAL A 397 O PHE A 405 SHEET 1 F 4 GLN A 386 PRO A 387 0 SHEET 2 F 4 ALA A 378 SER A 383 -1 N SER A 383 O GLN A 386 SHEET 3 F 4 PHE A 423 MET A 428 -1 O SER A 424 N GLU A 382 SHEET 4 F 4 THR A 437 LEU A 441 -1 O THR A 437 N VAL A 427 SHEET 1 G 4 SER B 239 PHE B 243 0 SHEET 2 G 4 GLU B 258 VAL B 266 -1 O VAL B 262 N PHE B 241 SHEET 3 G 4 TYR B 300 THR B 307 -1 O TYR B 300 N VAL B 266 SHEET 4 G 4 LYS B 288 GLU B 294 -1 N LYS B 288 O VAL B 305 SHEET 1 H 3 ASN B 276 VAL B 279 0 SHEET 2 H 3 TYR B 319 VAL B 323 -1 O LYS B 320 N TYR B 278 SHEET 3 H 3 ILE B 332 ILE B 336 -1 O ILE B 332 N VAL B 323 SHEET 1 I 4 GLN B 347 LEU B 351 0 SHEET 2 I 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 I 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 I 4 TYR B 391 THR B 393 -1 N LYS B 392 O LYS B 409 SHEET 1 J 4 GLN B 347 LEU B 351 0 SHEET 2 J 4 GLN B 362 PHE B 372 -1 O LEU B 368 N TYR B 349 SHEET 3 J 4 PHE B 404 ASP B 413 -1 O LEU B 410 N LEU B 365 SHEET 4 J 4 VAL B 397 LEU B 398 -1 N VAL B 397 O PHE B 405 SHEET 1 K 4 GLN B 386 GLU B 388 0 SHEET 2 K 4 ALA B 378 SER B 383 -1 N SER B 383 O GLN B 386 SHEET 3 K 4 PHE B 423 MET B 428 -1 O MET B 428 N ALA B 378 SHEET 4 K 4 TYR B 436 LEU B 441 -1 O THR B 437 N VAL B 427 SSBOND 1 CYS A 261 CYS A 321 1555 1555 2.05 SSBOND 2 CYS A 367 CYS A 425 1555 1555 2.07 SSBOND 3 CYS B 261 CYS B 321 1555 1555 2.05 SSBOND 4 CYS B 367 CYS B 425 1555 1555 2.03 LINK ND2 ASN A 297 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 297 C1 NAG D 1 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O6 NAG C 1 C1 FUC C 8 1555 1555 1.42 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.39 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.42 LINK O2 MAN C 4 C1 NAG C 5 1555 1555 1.42 LINK O2 MAN C 6 C1 NAG C 7 1555 1555 1.39 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O6 NAG D 1 C1 FUC D 8 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.41 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.45 LINK O2 MAN D 4 C1 NAG D 5 1555 1555 1.41 LINK O2 MAN D 6 C1 NAG D 7 1555 1555 1.41 CISPEP 1 TYR A 373 PRO A 374 0 -7.48 CISPEP 2 TYR B 373 PRO B 374 0 -2.24 CRYST1 49.778 79.155 139.223 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007183 0.00000