HEADER TRANSCRIPTION REGULATOR/DNA 20-MAY-08 3D71 TITLE CRYSTAL STRUCTURE OF E253Q BMRR BOUND TO 22 BASE PAIR PROMOTER SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BMR PROMOTER DNA; COMPND 3 CHAIN: M; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MULTIDRUG-EFFLUX TRANSPORTER 1 REGULATOR; COMPND 7 CHAIN: A; COMPND 8 FRAGMENT: RESIDUES 1-278; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 7 ORGANISM_TAXID: 1423; SOURCE 8 GENE: BMRR, BMR1R; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS TRANSCRIPTION REGULATOR, PROTEIN-DNA COMPLEX, MULTIDRUG BINDING KEYWDS 2 PROTEIN, MERR FAMILY, WINGED-HELIX, ACTIVATOR, DNA-BINDING, KEYWDS 3 TRANSCRIPTION REGULATION, TRANSCRIPTION REGULATOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.J.NEWBERRY,J.L.HUFFMAN,R.G.BRENNAN REVDAT 5 30-AUG-23 3D71 1 REMARK REVDAT 4 20-OCT-21 3D71 1 SOURCE REMARK SEQADV REVDAT 3 24-FEB-09 3D71 1 VERSN REVDAT 2 07-OCT-08 3D71 1 JRNL REVDAT 1 26-AUG-08 3D71 0 JRNL AUTH K.J.NEWBERRY,J.L.HUFFMAN,M.C.MILLER,N.VAZQUEZ-LASLOP, JRNL AUTH 2 A.A.NEYFAKH,R.G.BRENNAN JRNL TITL STRUCTURES OF BMRR-DRUG COMPLEXES REVEAL A RIGID MULTIDRUG JRNL TITL 2 BINDING POCKET AND TRANSCRIPTION ACTIVATION THROUGH TYROSINE JRNL TITL 3 EXPULSION JRNL REF J.BIOL.CHEM. V. 283 26795 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18658145 JRNL DOI 10.1074/JBC.M804191200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.J.NEWBERRY,R.G.BRENNAN REMARK 1 TITL THE STRUCTURAL MECHANISM FOR TRANSCRIPTION ACTIVATION BY REMARK 1 TITL 2 MERR FAMILY MEMBER MULTIDRUG TRANSPORTER ACTIVATION, N REMARK 1 TITL 3 TERMINUS. REMARK 1 REF J.BIOL.CHEM. V. 279 20356 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 20900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3240 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 184 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2285 REMARK 3 NUCLEIC ACID ATOMS : 468 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.32000 REMARK 3 B22 (A**2) : 10.32000 REMARK 3 B33 (A**2) : -20.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.850 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.150 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.730 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.260 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 48.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN.TOP REMARK 3 PARAMETER FILE 2 : DNA-RNA.TOP REMARK 3 PARAMETER FILE 3 : WATER.TOP REMARK 3 PARAMETER FILE 4 : ION.TOP REMARK 3 PARAMETER FILE 5 : FLO_TOP.TXT REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.PARAM REMARK 3 TOPOLOGY FILE 2 : DNA-RNA_REP.PARAM REMARK 3 TOPOLOGY FILE 3 : WATER_REP.PARAM REMARK 3 TOPOLOGY FILE 4 : FLO_PAR.TXT REMARK 3 TOPOLOGY FILE 5 : ION.PARAM REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047672. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SILICON SINGLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20900 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45400 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1EXJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, IMIDAZOLE, REMARK 280 TRIFLUOROETHANOL, PH 8.00, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.66500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.49750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.83250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.66500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.83250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 110.49750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 105.48000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.66500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT M -13 REMARK 465 MET A 1 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 HIS A 283 REMARK 465 HIS A 284 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG M -12 P OP1 OP2 REMARK 470 LEU A 277 CG CD1 CD2 REMARK 470 ASP A 278 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ZN ZN A 501 ZN ZN A 501 8665 1.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 73 30.52 -81.83 REMARK 500 GLU A 117 50.20 -114.77 REMARK 500 PRO A 119 -73.87 -41.12 REMARK 500 ALA A 139 51.61 -96.63 REMARK 500 GLU A 140 106.03 -45.41 REMARK 500 ALA A 162 -72.07 -111.54 REMARK 500 SER A 202 106.41 -32.87 REMARK 500 THR A 210 -149.55 -134.43 REMARK 500 SER A 225 119.69 -163.79 REMARK 500 TYR A 260 18.24 59.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 756 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ETF A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D70 RELATED DB: PDB REMARK 900 E253A BMRR BOUND TO DNA REMARK 900 RELATED ID: 3D6Z RELATED DB: PDB REMARK 900 R275E BMRR BOUND TO DNA AND RHODAMINE 6G REMARK 900 RELATED ID: 3D6Y RELATED DB: PDB REMARK 900 R275E BMRR BOUND TO DNA AND BERBERINE REMARK 900 RELATED ID: 1R8E RELATED DB: PDB REMARK 900 WTBMRR BOUND TO DNA TO 2.4 A RESOLUTION REMARK 900 RELATED ID: 1EXJ RELATED DB: PDB REMARK 900 WTBMRR BOUND TO DNA AND TPP REMARK 900 RELATED ID: 1BOW RELATED DB: PDB REMARK 900 C-TERMINAL FRAGMENT OF BMRR REMARK 900 RELATED ID: 2BOW RELATED DB: PDB REMARK 900 C-TERMINAL FRAGMENT OF BMRR BOUND TO TPP DBREF 3D71 A 1 278 UNP P39075 BMRR_BACSU 1 278 DBREF 3D71 M -13 12 PDB 3D6Y 3D71 -13 12 SEQADV 3D71 GLN A 253 UNP P39075 GLU 253 ENGINEERED MUTATION SEQADV 3D71 LEU A 277 UNP P39075 ALA 277 ENGINEERED MUTATION SEQADV 3D71 ASP A 278 UNP P39075 GLU 278 ENGINEERED MUTATION SEQADV 3D71 HIS A 279 UNP P39075 EXPRESSION TAG SEQADV 3D71 HIS A 280 UNP P39075 EXPRESSION TAG SEQADV 3D71 HIS A 281 UNP P39075 EXPRESSION TAG SEQADV 3D71 HIS A 282 UNP P39075 EXPRESSION TAG SEQADV 3D71 HIS A 283 UNP P39075 EXPRESSION TAG SEQADV 3D71 HIS A 284 UNP P39075 EXPRESSION TAG SEQRES 1 M 24 DT DG DA DC DC DC DT DC DC DC DC DT DT SEQRES 2 M 24 DA DG DG DG DG DA DG DG DG DT DC SEQRES 1 A 284 MET LYS GLU SER TYR TYR SER ILE GLY GLU VAL SER LYS SEQRES 2 A 284 LEU ALA ASN VAL SER ILE LYS ALA LEU ARG TYR TYR ASP SEQRES 3 A 284 LYS ILE ASP LEU PHE LYS PRO ALA TYR VAL ASP PRO ASP SEQRES 4 A 284 THR SER TYR ARG TYR TYR THR ASP SER GLN LEU ILE HIS SEQRES 5 A 284 LEU ASP LEU ILE LYS SER LEU LYS TYR ILE GLY THR PRO SEQRES 6 A 284 LEU GLU GLU MET LYS LYS ALA GLN ASP LEU GLU MET GLU SEQRES 7 A 284 GLU LEU PHE ALA PHE TYR THR GLU GLN GLU ARG GLN ILE SEQRES 8 A 284 ARG GLU LYS LEU ASP PHE LEU SER ALA LEU GLU GLN THR SEQRES 9 A 284 ILE SER LEU VAL LYS LYS ARG MET LYS ARG GLN MET GLU SEQRES 10 A 284 TYR PRO ALA LEU GLY GLU VAL PHE VAL LEU ASP GLU GLU SEQRES 11 A 284 GLU ILE ARG ILE ILE GLN THR GLU ALA GLU GLY ILE GLY SEQRES 12 A 284 PRO GLU ASN VAL LEU ASN ALA SER TYR SER LYS LEU LYS SEQRES 13 A 284 LYS PHE ILE GLU SER ALA ASP GLY PHE THR ASN ASN SER SEQRES 14 A 284 TYR GLY ALA THR PHE SER PHE GLN PRO TYR THR SER ILE SEQRES 15 A 284 ASP GLU MET THR TYR ARG HIS ILE PHE THR PRO VAL LEU SEQRES 16 A 284 THR ASN LYS GLN ILE SER SER ILE THR PRO ASP MET GLU SEQRES 17 A 284 ILE THR THR ILE PRO LYS GLY ARG TYR ALA CYS ILE ALA SEQRES 18 A 284 TYR ASN PHE SER PRO GLU HIS TYR PHE LEU ASN LEU GLN SEQRES 19 A 284 LYS LEU ILE LYS TYR ILE ALA ASP ARG GLN LEU THR VAL SEQRES 20 A 284 VAL SER ASP VAL TYR GLN LEU ILE ILE PRO ILE HIS TYR SEQRES 21 A 284 SER PRO LYS LYS GLN GLU GLU TYR ARG VAL GLU MET LYS SEQRES 22 A 284 ILE ARG ILE LEU ASP HIS HIS HIS HIS HIS HIS HET ZN A 501 1 HET FLC A 756 13 HET PGO A 600 5 HET PGO A 602 5 HET PGO A 604 5 HET ETF A 901 6 HET IMD A 302 5 HET IMD A 303 5 HET IMD A 304 5 HET IMD A 305 5 HET IMD A 306 5 HETNAM ZN ZINC ION HETNAM FLC CITRATE ANION HETNAM PGO S-1,2-PROPANEDIOL HETNAM ETF TRIFLUOROETHANOL HETNAM IMD IMIDAZOLE FORMUL 3 ZN ZN 2+ FORMUL 4 FLC C6 H5 O7 3- FORMUL 5 PGO 3(C3 H8 O2) FORMUL 8 ETF C2 H3 F3 O FORMUL 9 IMD 5(C3 H5 N2 1+) FORMUL 14 HOH *55(H2 O) HELIX 1 1 ILE A 8 ASN A 16 1 9 HELIX 2 2 SER A 18 ILE A 28 1 11 HELIX 3 3 SER A 48 LEU A 50 5 3 HELIX 4 4 ILE A 51 ILE A 62 1 12 HELIX 5 5 PRO A 65 GLN A 73 1 9 HELIX 6 6 GLU A 76 GLU A 117 1 42 HELIX 7 7 LEU A 148 SER A 151 5 4 HELIX 8 8 TYR A 152 GLY A 164 1 13 HELIX 9 9 SER A 181 MET A 185 5 5 HELIX 10 10 SER A 225 ARG A 243 1 19 SHEET 1 A 3 TYR A 6 SER A 7 0 SHEET 2 A 3 ARG A 43 TYR A 45 -1 O TYR A 45 N TYR A 6 SHEET 3 A 3 TYR A 35 VAL A 36 -1 N TYR A 35 O TYR A 44 SHEET 1 B 8 VAL A 124 GLU A 129 0 SHEET 2 B 8 GLY A 215 ASN A 223 -1 O CYS A 219 N PHE A 125 SHEET 3 B 8 TYR A 268 ILE A 276 -1 O VAL A 270 N TYR A 222 SHEET 4 B 8 VAL A 247 PRO A 257 -1 N ILE A 256 O ARG A 269 SHEET 5 B 8 TYR A 170 PHE A 174 -1 N ALA A 172 O GLN A 253 SHEET 6 B 8 HIS A 189 PRO A 193 -1 O PHE A 191 N GLY A 171 SHEET 7 B 8 ILE A 132 GLU A 138 -1 N THR A 137 O ILE A 190 SHEET 8 B 8 GLU A 208 ILE A 212 -1 O GLU A 208 N GLN A 136 SITE 1 AC1 1 HIS A 189 SITE 1 AC2 3 PRO A 144 TYR A 187 ILE A 255 SITE 1 AC3 3 ARG A 111 ARG A 133 ASN A 197 SITE 1 AC4 6 SER A 175 PHE A 176 MET A 207 ILE A 209 SITE 2 AC4 6 SER A 249 ASP A 250 SITE 1 AC5 5 TYR A 5 TYR A 35 GLN A 234 LYS A 235 SITE 2 AC5 5 LYS A 238 SITE 1 AC6 4 TYR A 5 ALA A 34 ASN A 232 LYS A 235 SITE 1 AC7 3 ILE A 51 ASN A 149 ILE A 255 SITE 1 AC8 3 PRO A 144 ILE A 182 PRO A 226 SITE 1 AC9 5 GLU A 129 ILE A 132 LEU A 254 GLU A 271 SITE 2 AC9 5 LYS A 273 SITE 1 BC1 2 TYR A 35 LYS A 238 SITE 1 BC2 4 ARG A 133 THR A 196 LYS A 198 ILE A 200 CRYST1 105.480 105.480 147.330 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009480 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006790 0.00000