data_3D7N # _entry.id 3D7N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3D7N RCSB RCSB047694 WWPDB D_1000047694 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC7446 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3D7N _pdbx_database_status.recvd_initial_deposition_date 2008-05-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, R.' 1 'Xu, X.' 2 'Gu, J.' 3 'Savchenko, A.' 4 'Edwards, A.' 5 'Joachimiak, A.' 6 'Midwest Center for Structural Genomics (MCSG)' 7 # _citation.id primary _citation.title 'The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zhang, R.' 1 primary 'Xu, X.' 2 primary 'Gu, J.' 3 primary 'Savchenko, A.' 4 primary 'Edwards, A.' 5 primary 'Joachimiak, A.' 6 # _cell.entry_id 3D7N _cell.length_a 73.948 _cell.length_b 73.948 _cell.length_c 144.488 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3D7N _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Flavodoxin, WrbA-like protein' 20944.268 1 ? ? ? ? 2 water nat water 18.015 27 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)TTNSSSNTVVVYHSGYGHTHR(MSE)AEAVAEGAEATLHAIDAEGNLSEDGWAALDAADAIIFGTPTY(MSE)GG PSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANR (MSE)GSYIAP(MSE)AQSDADAAPEE(MSE)SVGDLETARLYGARVANVARQHKSTERV ; _entity_poly.pdbx_seq_one_letter_code_can ;MTTNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADAS SKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADA APEEMSVGDLETARLYGARVANVARQHKSTERV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC7446 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 THR n 1 3 THR n 1 4 ASN n 1 5 SER n 1 6 SER n 1 7 SER n 1 8 ASN n 1 9 THR n 1 10 VAL n 1 11 VAL n 1 12 VAL n 1 13 TYR n 1 14 HIS n 1 15 SER n 1 16 GLY n 1 17 TYR n 1 18 GLY n 1 19 HIS n 1 20 THR n 1 21 HIS n 1 22 ARG n 1 23 MSE n 1 24 ALA n 1 25 GLU n 1 26 ALA n 1 27 VAL n 1 28 ALA n 1 29 GLU n 1 30 GLY n 1 31 ALA n 1 32 GLU n 1 33 ALA n 1 34 THR n 1 35 LEU n 1 36 HIS n 1 37 ALA n 1 38 ILE n 1 39 ASP n 1 40 ALA n 1 41 GLU n 1 42 GLY n 1 43 ASN n 1 44 LEU n 1 45 SER n 1 46 GLU n 1 47 ASP n 1 48 GLY n 1 49 TRP n 1 50 ALA n 1 51 ALA n 1 52 LEU n 1 53 ASP n 1 54 ALA n 1 55 ALA n 1 56 ASP n 1 57 ALA n 1 58 ILE n 1 59 ILE n 1 60 PHE n 1 61 GLY n 1 62 THR n 1 63 PRO n 1 64 THR n 1 65 TYR n 1 66 MSE n 1 67 GLY n 1 68 GLY n 1 69 PRO n 1 70 SER n 1 71 TRP n 1 72 GLN n 1 73 PHE n 1 74 LYS n 1 75 LYS n 1 76 PHE n 1 77 ALA n 1 78 ASP n 1 79 ALA n 1 80 SER n 1 81 SER n 1 82 LYS n 1 83 PRO n 1 84 TRP n 1 85 PHE n 1 86 SER n 1 87 ALA n 1 88 LYS n 1 89 TRP n 1 90 GLN n 1 91 ASP n 1 92 LYS n 1 93 VAL n 1 94 PHE n 1 95 GLY n 1 96 GLY n 1 97 PHE n 1 98 THR n 1 99 ASN n 1 100 SER n 1 101 ALA n 1 102 SER n 1 103 LEU n 1 104 ASN n 1 105 GLY n 1 106 ASP n 1 107 LYS n 1 108 LEU n 1 109 ASN n 1 110 THR n 1 111 LEU n 1 112 GLN n 1 113 TYR n 1 114 LEU n 1 115 VAL n 1 116 LEU n 1 117 LEU n 1 118 ALA n 1 119 GLY n 1 120 GLN n 1 121 HIS n 1 122 GLY n 1 123 GLY n 1 124 LEU n 1 125 TRP n 1 126 VAL n 1 127 SER n 1 128 LEU n 1 129 GLY n 1 130 ILE n 1 131 LYS n 1 132 PRO n 1 133 SER n 1 134 ASN n 1 135 LEU n 1 136 LYS n 1 137 SER n 1 138 SER n 1 139 VAL n 1 140 ARG n 1 141 ASN n 1 142 ASP n 1 143 ALA n 1 144 ASN n 1 145 ARG n 1 146 MSE n 1 147 GLY n 1 148 SER n 1 149 TYR n 1 150 ILE n 1 151 ALA n 1 152 PRO n 1 153 MSE n 1 154 ALA n 1 155 GLN n 1 156 SER n 1 157 ASP n 1 158 ALA n 1 159 ASP n 1 160 ALA n 1 161 ALA n 1 162 PRO n 1 163 GLU n 1 164 GLU n 1 165 MSE n 1 166 SER n 1 167 VAL n 1 168 GLY n 1 169 ASP n 1 170 LEU n 1 171 GLU n 1 172 THR n 1 173 ALA n 1 174 ARG n 1 175 LEU n 1 176 TYR n 1 177 GLY n 1 178 ALA n 1 179 ARG n 1 180 VAL n 1 181 ALA n 1 182 ASN n 1 183 VAL n 1 184 ALA n 1 185 ARG n 1 186 GLN n 1 187 HIS n 1 188 LYS n 1 189 SER n 1 190 THR n 1 191 GLU n 1 192 ARG n 1 193 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'AGR_L_1309, Atu4201' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'str. C58' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Agrobacterium tumefaciens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 176299 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A9CG77_AGRT5 _struct_ref.pdbx_db_accession A9CG77 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTTNSSSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADAS SKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANRMGSYIAPMAQSDADA APEEMSVGDLETARLYGARVANVARQHKSTERV ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3D7N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 193 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A9CG77 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 193 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 193 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3D7N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.72 _exptl_crystal.density_percent_sol 54.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M Hepes, 0.2M NaCl, 25%PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type SBC-2 _diffrn_detector.pdbx_collection_date 2006-11-22 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 channel' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9794 # _reflns.entry_id 3D7N _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 58.52 _reflns.number_all 10480 _reflns.number_obs 10224 _reflns.percent_possible_obs 97.56 _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 35.0 _reflns.B_iso_Wilson_estimate 48.1 _reflns.pdbx_redundancy 24.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.36 _reflns_shell.percent_possible_all 92.32 _reflns_shell.Rmerge_I_obs 0.65 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.45 _reflns_shell.pdbx_redundancy 17.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 781 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3D7N _refine.ls_number_reflns_obs 10224 _refine.ls_number_reflns_all 10480 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.52 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 97.56 _refine.ls_R_factor_obs 0.20954 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20748 _refine.ls_R_factor_R_free 0.25378 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 514 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.B_iso_mean 47.774 _refine.aniso_B[1][1] 2.56 _refine.aniso_B[2][2] 2.56 _refine.aniso_B[3][3] -3.84 _refine.aniso_B[1][2] 1.28 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.233 _refine.pdbx_overall_ESU_R_Free 0.206 _refine.overall_SU_ML 0.155 _refine.overall_SU_B 14.067 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1187 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 1214 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 58.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.021 ? 1217 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 785 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.766 1.916 ? 1649 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.055 3.000 ? 1906 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 8.411 5.000 ? 154 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.046 24.259 ? 54 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.403 15.000 ? 181 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.624 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.113 0.200 ? 175 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1386 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 257 'X-RAY DIFFRACTION' ? r_nbd_refined 0.236 0.200 ? 289 'X-RAY DIFFRACTION' ? r_nbd_other 0.202 0.200 ? 768 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.189 0.200 ? 591 'X-RAY DIFFRACTION' ? r_nbtor_other 0.098 0.200 ? 595 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.227 0.200 ? 39 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 0.027 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.170 0.200 ? 15 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.257 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.115 0.200 ? 5 'X-RAY DIFFRACTION' ? r_mcbond_it 1.410 1.500 ? 926 'X-RAY DIFFRACTION' ? r_mcbond_other 0.222 1.500 ? 326 'X-RAY DIFFRACTION' ? r_mcangle_it 1.864 2.000 ? 1207 'X-RAY DIFFRACTION' ? r_scbond_it 2.397 3.000 ? 533 'X-RAY DIFFRACTION' ? r_scangle_it 3.453 4.500 ? 442 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.300 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.number_reflns_R_work 678 _refine_ls_shell.R_factor_R_work 0.262 _refine_ls_shell.percent_reflns_obs 92.32 _refine_ls_shell.R_factor_R_free 0.324 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 721 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3D7N _struct.title 'The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens' _struct.pdbx_descriptor 'Flavodoxin, WrbA-like protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3D7N _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text ;flavodoxin, WrbA-like protein, structural genomics, PSI, MCSG, Protein Structure Initiative, Midwest Center for Structural Genomics, ELECTRON TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ;This protein exists as tetramer. The rest part of the biological assembly is generated by the operations:x-y,-y,-z+1; -x+1,-y,z; -x+y+1,y,-z+1 ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 18 ? GLU A 32 ? GLY A 18 GLU A 32 1 ? 15 HELX_P HELX_P2 2 SER A 45 ? ALA A 55 ? SER A 45 ALA A 55 1 ? 11 HELX_P HELX_P3 3 SER A 70 ? SER A 80 ? SER A 70 SER A 80 1 ? 11 HELX_P HELX_P4 4 SER A 80 ? SER A 86 ? SER A 80 SER A 86 1 ? 7 HELX_P HELX_P5 5 LEU A 103 ? HIS A 121 ? LEU A 103 HIS A 121 1 ? 19 HELX_P HELX_P6 6 SER A 166 ? HIS A 187 ? SER A 166 HIS A 187 1 ? 22 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ARG 22 C ? ? ? 1_555 A MSE 23 N ? ? A ARG 22 A MSE 23 1_555 ? ? ? ? ? ? ? 1.321 ? covale2 covale ? ? A MSE 23 C ? ? ? 1_555 A ALA 24 N ? ? A MSE 23 A ALA 24 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? A TYR 65 C ? ? ? 1_555 A MSE 66 N ? ? A TYR 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.310 ? covale4 covale ? ? A MSE 66 C ? ? ? 1_555 A GLY 67 N ? ? A MSE 66 A GLY 67 1_555 ? ? ? ? ? ? ? 1.312 ? covale5 covale ? ? A PRO 152 C ? ? ? 1_555 A MSE 153 N ? ? A PRO 152 A MSE 153 1_555 ? ? ? ? ? ? ? 1.313 ? covale6 covale ? ? A MSE 153 C ? ? ? 1_555 A ALA 154 N ? ? A MSE 153 A ALA 154 1_555 ? ? ? ? ? ? ? 1.313 ? covale7 covale ? ? A GLU 164 C ? ? ? 1_555 A MSE 165 N ? ? A GLU 164 A MSE 165 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? A MSE 165 C ? ? ? 1_555 A SER 166 N ? ? A MSE 165 A SER 166 1_555 ? ? ? ? ? ? ? 1.319 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 34 ? ALA A 37 ? THR A 34 ALA A 37 A 2 THR A 9 ? TYR A 13 ? THR A 9 TYR A 13 A 3 ALA A 57 ? TYR A 65 ? ALA A 57 TYR A 65 A 4 VAL A 93 ? SER A 100 ? VAL A 93 SER A 100 A 5 LEU A 124 ? TRP A 125 ? LEU A 124 TRP A 125 B 1 GLY A 68 ? PRO A 69 ? GLY A 68 PRO A 69 B 2 ALA A 57 ? TYR A 65 ? ALA A 57 TYR A 65 B 3 VAL A 93 ? SER A 100 ? VAL A 93 SER A 100 B 4 MSE A 153 ? GLN A 155 ? MSE A 153 GLN A 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 34 ? O THR A 34 N VAL A 11 ? N VAL A 11 A 2 3 N VAL A 10 ? N VAL A 10 O ILE A 59 ? O ILE A 59 A 3 4 N PHE A 60 ? N PHE A 60 O GLY A 95 ? O GLY A 95 A 4 5 N PHE A 94 ? N PHE A 94 O LEU A 124 ? O LEU A 124 B 1 2 O GLY A 68 ? O GLY A 68 N TYR A 65 ? N TYR A 65 B 2 3 N PHE A 60 ? N PHE A 60 O GLY A 95 ? O GLY A 95 B 3 4 N SER A 100 ? N SER A 100 O ALA A 154 ? O ALA A 154 # _database_PDB_matrix.entry_id 3D7N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3D7N _atom_sites.fract_transf_matrix[1][1] 0.013523 _atom_sites.fract_transf_matrix[1][2] 0.007808 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015615 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006921 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 THR 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 HIS 14 14 14 HIS HIS A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 TYR 17 17 17 TYR TYR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 HIS 19 19 19 HIS HIS A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 HIS 21 21 21 HIS HIS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 MSE 23 23 23 MSE MSE A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 MSE 66 66 66 MSE MSE A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 TRP 71 71 71 TRP TRP A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 TRP 84 84 84 TRP TRP A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 LYS 88 88 88 LYS LYS A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 TYR 113 113 113 TYR TYR A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 GLN 120 120 120 GLN GLN A . n A 1 121 HIS 121 121 121 HIS HIS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 TRP 125 125 125 TRP TRP A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 ILE 130 130 ? ? ? A . n A 1 131 LYS 131 131 ? ? ? A . n A 1 132 PRO 132 132 ? ? ? A . n A 1 133 SER 133 133 ? ? ? A . n A 1 134 ASN 134 134 ? ? ? A . n A 1 135 LEU 135 135 ? ? ? A . n A 1 136 LYS 136 136 ? ? ? A . n A 1 137 SER 137 137 ? ? ? A . n A 1 138 SER 138 138 ? ? ? A . n A 1 139 VAL 139 139 ? ? ? A . n A 1 140 ARG 140 140 ? ? ? A . n A 1 141 ASN 141 141 ? ? ? A . n A 1 142 ASP 142 142 ? ? ? A . n A 1 143 ALA 143 143 ? ? ? A . n A 1 144 ASN 144 144 ? ? ? A . n A 1 145 ARG 145 145 ? ? ? A . n A 1 146 MSE 146 146 ? ? ? A . n A 1 147 GLY 147 147 ? ? ? A . n A 1 148 SER 148 148 ? ? ? A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 MSE 153 153 153 MSE MSE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 GLN 155 155 155 GLN GLN A . n A 1 156 SER 156 156 156 SER SER A . n A 1 157 ASP 157 157 ? ? ? A . n A 1 158 ALA 158 158 ? ? ? A . n A 1 159 ASP 159 159 ? ? ? A . n A 1 160 ALA 160 160 ? ? ? A . n A 1 161 ALA 161 161 ? ? ? A . n A 1 162 PRO 162 162 ? ? ? A . n A 1 163 GLU 163 163 ? ? ? A . n A 1 164 GLU 164 164 164 GLU GLU A . n A 1 165 MSE 165 165 165 MSE MSE A . n A 1 166 SER 166 166 166 SER SER A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 ASP 169 169 169 ASP ASP A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 TYR 176 176 176 TYR TYR A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 ASN 182 182 182 ASN ASN A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 ALA 184 184 184 ALA ALA A . n A 1 185 ARG 185 185 185 ARG ARG A . n A 1 186 GLN 186 186 186 GLN GLN A . n A 1 187 HIS 187 187 187 HIS HIS A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 SER 189 189 ? ? ? A . n A 1 190 THR 190 190 ? ? ? A . n A 1 191 GLU 191 191 ? ? ? A . n A 1 192 ARG 192 192 ? ? ? A . n A 1 193 VAL 193 193 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 194 1 HOH HOH A . B 2 HOH 2 195 3 HOH HOH A . B 2 HOH 3 196 4 HOH HOH A . B 2 HOH 4 197 5 HOH HOH A . B 2 HOH 5 198 6 HOH HOH A . B 2 HOH 6 199 7 HOH HOH A . B 2 HOH 7 200 9 HOH HOH A . B 2 HOH 8 201 10 HOH HOH A . B 2 HOH 9 202 11 HOH HOH A . B 2 HOH 10 203 12 HOH HOH A . B 2 HOH 11 204 13 HOH HOH A . B 2 HOH 12 205 14 HOH HOH A . B 2 HOH 13 206 15 HOH HOH A . B 2 HOH 14 207 16 HOH HOH A . B 2 HOH 15 208 17 HOH HOH A . B 2 HOH 16 209 18 HOH HOH A . B 2 HOH 17 210 19 HOH HOH A . B 2 HOH 18 211 20 HOH HOH A . B 2 HOH 19 212 21 HOH HOH A . B 2 HOH 20 213 22 HOH HOH A . B 2 HOH 21 214 24 HOH HOH A . B 2 HOH 22 215 25 HOH HOH A . B 2 HOH 23 216 26 HOH HOH A . B 2 HOH 24 217 27 HOH HOH A . B 2 HOH 25 218 30 HOH HOH A . B 2 HOH 26 219 31 HOH HOH A . B 2 HOH 27 220 32 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 23 ? MET SELENOMETHIONINE 2 A MSE 66 A MSE 66 ? MET SELENOMETHIONINE 3 A MSE 153 A MSE 153 ? MET SELENOMETHIONINE 4 A MSE 165 A MSE 165 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8910 ? 1 MORE -55 ? 1 'SSA (A^2)' 21570 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 73.9480000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 144.4880000000 4 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 73.9480000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 144.4880000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-15 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Source and taxonomy' 3 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 25.2885 _pdbx_refine_tls.origin_y 12.5357 _pdbx_refine_tls.origin_z 77.9606 _pdbx_refine_tls.T[1][1] -0.1034 _pdbx_refine_tls.T[2][2] -0.1079 _pdbx_refine_tls.T[3][3] -0.1892 _pdbx_refine_tls.T[1][2] 0.1429 _pdbx_refine_tls.T[1][3] 0.0199 _pdbx_refine_tls.T[2][3] -0.0486 _pdbx_refine_tls.L[1][1] 2.5222 _pdbx_refine_tls.L[2][2] 4.7107 _pdbx_refine_tls.L[3][3] 4.6193 _pdbx_refine_tls.L[1][2] 0.1778 _pdbx_refine_tls.L[1][3] -0.1660 _pdbx_refine_tls.L[2][3] 0.7441 _pdbx_refine_tls.S[1][1] -0.0271 _pdbx_refine_tls.S[1][2] -0.1721 _pdbx_refine_tls.S[1][3] 0.1378 _pdbx_refine_tls.S[2][1] 0.1716 _pdbx_refine_tls.S[2][2] -0.1032 _pdbx_refine_tls.S[2][3] 0.4234 _pdbx_refine_tls.S[3][1] -0.5385 _pdbx_refine_tls.S[3][2] -0.5156 _pdbx_refine_tls.S[3][3] 0.1302 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 7 A 7 A 40 A 40 ? 'X-RAY DIFFRACTION' ? 2 1 A 41 A 41 A 80 A 80 ? 'X-RAY DIFFRACTION' ? 3 1 A 81 A 81 A 129 A 129 ? 'X-RAY DIFFRACTION' ? 4 1 A 149 A 149 A 156 A 156 ? 'X-RAY DIFFRACTION' ? 5 1 A 165 A 165 A 187 A 187 ? 'X-RAY DIFFRACTION' ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 124 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 124 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 124 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.06 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -11.94 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 17 ? ? 95.25 -18.70 2 1 SER A 102 ? ? -146.01 -132.35 3 1 ASN A 104 ? ? -54.20 0.84 4 1 MSE A 165 ? ? 171.75 151.36 5 1 HIS A 187 ? ? -147.78 55.85 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A THR 3 ? A THR 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A ILE 130 ? A ILE 130 7 1 Y 1 A LYS 131 ? A LYS 131 8 1 Y 1 A PRO 132 ? A PRO 132 9 1 Y 1 A SER 133 ? A SER 133 10 1 Y 1 A ASN 134 ? A ASN 134 11 1 Y 1 A LEU 135 ? A LEU 135 12 1 Y 1 A LYS 136 ? A LYS 136 13 1 Y 1 A SER 137 ? A SER 137 14 1 Y 1 A SER 138 ? A SER 138 15 1 Y 1 A VAL 139 ? A VAL 139 16 1 Y 1 A ARG 140 ? A ARG 140 17 1 Y 1 A ASN 141 ? A ASN 141 18 1 Y 1 A ASP 142 ? A ASP 142 19 1 Y 1 A ALA 143 ? A ALA 143 20 1 Y 1 A ASN 144 ? A ASN 144 21 1 Y 1 A ARG 145 ? A ARG 145 22 1 Y 1 A MSE 146 ? A MSE 146 23 1 Y 1 A GLY 147 ? A GLY 147 24 1 Y 1 A SER 148 ? A SER 148 25 1 Y 1 A ASP 157 ? A ASP 157 26 1 Y 1 A ALA 158 ? A ALA 158 27 1 Y 1 A ASP 159 ? A ASP 159 28 1 Y 1 A ALA 160 ? A ALA 160 29 1 Y 1 A ALA 161 ? A ALA 161 30 1 Y 1 A PRO 162 ? A PRO 162 31 1 Y 1 A GLU 163 ? A GLU 163 32 1 Y 1 A SER 189 ? A SER 189 33 1 Y 1 A THR 190 ? A THR 190 34 1 Y 1 A GLU 191 ? A GLU 191 35 1 Y 1 A ARG 192 ? A ARG 192 36 1 Y 1 A VAL 193 ? A VAL 193 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #