HEADER ELECTRON TRANSPORT 21-MAY-08 3D7N TITLE THE CRYSTAL STRUCTURE OF THE FLAVODOXIN, WRBA-LIKE PROTEIN FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVODOXIN, WRBA-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: STR. C58; SOURCE 5 GENE: AGR_L_1309, ATU4201; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS FLAVODOXIN, WRBA-LIKE PROTEIN, STRUCTURAL GENOMICS, PSI, MCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 16-OCT-24 3D7N 1 LINK REVDAT 3 13-JUL-11 3D7N 1 VERSN REVDAT 2 24-FEB-09 3D7N 1 VERSN REVDAT 1 15-JUL-08 3D7N 0 JRNL AUTH R.ZHANG,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE FLAVODOXIN, WRBA-LIKE PROTEIN JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED 2008 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 10224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 48.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.56000 REMARK 3 B22 (A**2) : 2.56000 REMARK 3 B33 (A**2) : -3.84000 REMARK 3 B12 (A**2) : 1.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.067 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1217 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 785 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1649 ; 1.766 ; 1.916 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1906 ; 1.055 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 154 ; 8.411 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;35.046 ;24.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 181 ;18.403 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;12.624 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 175 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1386 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 257 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 289 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 768 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 591 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 595 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 39 ; 0.227 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.027 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 926 ; 1.410 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 326 ; 0.222 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 1.864 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 533 ; 2.397 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 442 ; 3.453 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 40 REMARK 3 RESIDUE RANGE : A 41 A 80 REMARK 3 RESIDUE RANGE : A 81 A 129 REMARK 3 RESIDUE RANGE : A 149 A 156 REMARK 3 RESIDUE RANGE : A 165 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2885 12.5357 77.9606 REMARK 3 T TENSOR REMARK 3 T11: -0.1034 T22: -0.1079 REMARK 3 T33: -0.1892 T12: 0.1429 REMARK 3 T13: 0.0199 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 2.5222 L22: 4.7107 REMARK 3 L33: 4.6193 L12: 0.1778 REMARK 3 L13: -0.1660 L23: 0.7441 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.1721 S13: 0.1378 REMARK 3 S21: 0.1716 S22: -0.1032 S23: 0.4234 REMARK 3 S31: -0.5385 S32: -0.5156 S33: 0.1302 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10224 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 58.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 24.70 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 17.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 0.2M NACL, 25%PEG3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.32533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.16267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 96.32533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.16267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.32533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 48.16267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 96.32533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.16267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTS AS TETRAMER. THE REST PART OF THE REMARK 300 BIOLOGICAL ASSEMBLY IS GENERATED BY THE OPERATIONS:X-Y,-Y,-Z+1; -X+ REMARK 300 1,-Y,Z; -X+Y+1,Y,-Z+1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 73.94800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 144.48800 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 73.94800 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 144.48800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ASN A 4 REMARK 465 SER A 5 REMARK 465 ILE A 130 REMARK 465 LYS A 131 REMARK 465 PRO A 132 REMARK 465 SER A 133 REMARK 465 ASN A 134 REMARK 465 LEU A 135 REMARK 465 LYS A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 VAL A 139 REMARK 465 ARG A 140 REMARK 465 ASN A 141 REMARK 465 ASP A 142 REMARK 465 ALA A 143 REMARK 465 ASN A 144 REMARK 465 ARG A 145 REMARK 465 MSE A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 ASP A 157 REMARK 465 ALA A 158 REMARK 465 ASP A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 PRO A 162 REMARK 465 GLU A 163 REMARK 465 SER A 189 REMARK 465 THR A 190 REMARK 465 GLU A 191 REMARK 465 ARG A 192 REMARK 465 VAL A 193 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 124 CB - CG - CD1 ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 17 -18.70 95.25 REMARK 500 SER A 102 -132.35 -146.01 REMARK 500 ASN A 104 0.84 -54.20 REMARK 500 MSE A 165 151.36 171.75 REMARK 500 HIS A 187 55.85 -147.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7446 RELATED DB: TARGETDB DBREF 3D7N A 1 193 UNP A9CG77 A9CG77_AGRT5 1 193 SEQRES 1 A 193 MSE THR THR ASN SER SER SER ASN THR VAL VAL VAL TYR SEQRES 2 A 193 HIS SER GLY TYR GLY HIS THR HIS ARG MSE ALA GLU ALA SEQRES 3 A 193 VAL ALA GLU GLY ALA GLU ALA THR LEU HIS ALA ILE ASP SEQRES 4 A 193 ALA GLU GLY ASN LEU SER GLU ASP GLY TRP ALA ALA LEU SEQRES 5 A 193 ASP ALA ALA ASP ALA ILE ILE PHE GLY THR PRO THR TYR SEQRES 6 A 193 MSE GLY GLY PRO SER TRP GLN PHE LYS LYS PHE ALA ASP SEQRES 7 A 193 ALA SER SER LYS PRO TRP PHE SER ALA LYS TRP GLN ASP SEQRES 8 A 193 LYS VAL PHE GLY GLY PHE THR ASN SER ALA SER LEU ASN SEQRES 9 A 193 GLY ASP LYS LEU ASN THR LEU GLN TYR LEU VAL LEU LEU SEQRES 10 A 193 ALA GLY GLN HIS GLY GLY LEU TRP VAL SER LEU GLY ILE SEQRES 11 A 193 LYS PRO SER ASN LEU LYS SER SER VAL ARG ASN ASP ALA SEQRES 12 A 193 ASN ARG MSE GLY SER TYR ILE ALA PRO MSE ALA GLN SER SEQRES 13 A 193 ASP ALA ASP ALA ALA PRO GLU GLU MSE SER VAL GLY ASP SEQRES 14 A 193 LEU GLU THR ALA ARG LEU TYR GLY ALA ARG VAL ALA ASN SEQRES 15 A 193 VAL ALA ARG GLN HIS LYS SER THR GLU ARG VAL MODRES 3D7N MSE A 23 MET SELENOMETHIONINE MODRES 3D7N MSE A 66 MET SELENOMETHIONINE MODRES 3D7N MSE A 153 MET SELENOMETHIONINE MODRES 3D7N MSE A 165 MET SELENOMETHIONINE HET MSE A 23 8 HET MSE A 66 8 HET MSE A 153 8 HET MSE A 165 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *27(H2 O) HELIX 1 1 GLY A 18 GLU A 32 1 15 HELIX 2 2 SER A 45 ALA A 55 1 11 HELIX 3 3 SER A 70 SER A 80 1 11 HELIX 4 4 SER A 80 SER A 86 1 7 HELIX 5 5 LEU A 103 HIS A 121 1 19 HELIX 6 6 SER A 166 HIS A 187 1 22 SHEET 1 A 5 THR A 34 ALA A 37 0 SHEET 2 A 5 THR A 9 TYR A 13 1 N VAL A 11 O THR A 34 SHEET 3 A 5 ALA A 57 TYR A 65 1 O ILE A 59 N VAL A 10 SHEET 4 A 5 VAL A 93 SER A 100 1 O GLY A 95 N PHE A 60 SHEET 5 A 5 LEU A 124 TRP A 125 1 O LEU A 124 N PHE A 94 SHEET 1 B 4 GLY A 68 PRO A 69 0 SHEET 2 B 4 ALA A 57 TYR A 65 -1 N TYR A 65 O GLY A 68 SHEET 3 B 4 VAL A 93 SER A 100 1 O GLY A 95 N PHE A 60 SHEET 4 B 4 MSE A 153 GLN A 155 1 O ALA A 154 N SER A 100 LINK C ARG A 22 N MSE A 23 1555 1555 1.32 LINK C MSE A 23 N ALA A 24 1555 1555 1.33 LINK C TYR A 65 N MSE A 66 1555 1555 1.31 LINK C MSE A 66 N GLY A 67 1555 1555 1.31 LINK C PRO A 152 N MSE A 153 1555 1555 1.31 LINK C MSE A 153 N ALA A 154 1555 1555 1.31 LINK C GLU A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N SER A 166 1555 1555 1.32 CRYST1 73.948 73.948 144.488 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013523 0.007808 0.000000 0.00000 SCALE2 0.000000 0.015615 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006921 0.00000 CONECT 126 135 CONECT 135 126 136 CONECT 136 135 137 139 CONECT 137 136 138 143 CONECT 138 137 CONECT 139 136 140 CONECT 140 139 141 CONECT 141 140 142 CONECT 142 141 CONECT 143 137 CONECT 430 440 CONECT 440 430 441 CONECT 441 440 442 444 CONECT 442 441 443 448 CONECT 443 442 CONECT 444 441 445 CONECT 445 444 446 CONECT 446 445 447 CONECT 447 446 CONECT 448 442 CONECT 962 967 CONECT 967 962 968 CONECT 968 967 969 971 CONECT 969 968 970 975 CONECT 970 969 CONECT 971 968 972 CONECT 972 971 973 CONECT 973 972 974 CONECT 974 973 CONECT 975 969 CONECT 997 1004 CONECT 1004 997 1005 CONECT 1005 1004 1006 1008 CONECT 1006 1005 1007 1012 CONECT 1007 1006 CONECT 1008 1005 1009 CONECT 1009 1008 1010 CONECT 1010 1009 1011 CONECT 1011 1010 CONECT 1012 1006 MASTER 393 0 4 6 9 0 0 6 1214 1 40 15 END