HEADER TRANSPORT PROTEIN 21-MAY-08 3D7P TITLE CRYSTAL STRUCTURE OF HUMAN TRANSTHYRETIN (TTR) AT PH 4.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PREALBUMIN, TBPA, TTR, ATTR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHNTR, PKNTR KEYWDS WT-TTR, AMYLOID, TRANSTHYRETIN, ACIDIC PH, NATIVE TTR, AND CRYSTAL KEYWDS 2 STRUCTURE, DISEASE MUTATION, GAMMA-CARBOXYGLUTAMIC ACID, KEYWDS 3 GLYCOPROTEIN, HORMONE, POLYMORPHISM, POLYNEUROPATHY, RETINOL- KEYWDS 4 BINDING, SECRETED, THYROID HORMONE, TRANSPORT, VITAMIN A, TRANSPORT KEYWDS 5 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.K.PALANINATHAN,N.N.MOHAMEDMOHAIDEEN,W.C.SNEE,J.W.KELLY, AUTHOR 2 J.C.SACCHETTINI REVDAT 4 30-AUG-23 3D7P 1 REMARK REVDAT 3 24-FEB-09 3D7P 1 VERSN REVDAT 2 30-SEP-08 3D7P 1 JRNL REVDAT 1 12-AUG-08 3D7P 0 JRNL AUTH S.K.PALANINATHAN,N.N.MOHAMEDMOHAIDEEN,W.C.SNEE,J.W.KELLY, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL STRUCTURAL INSIGHT INTO PH-INDUCED CONFORMATIONAL CHANGES JRNL TITL 2 WITHIN THE NATIVE HUMAN TRANSTHYRETIN TETRAMER. JRNL REF J.MOL.BIOL. V. 382 1157 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18662699 JRNL DOI 10.1016/J.JMB.2008.07.029 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1750 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1799 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1165 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2454 ; 1.353 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2849 ; 0.854 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 228 ;11.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;28.224 ;23.611 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 270 ;13.350 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.869 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2012 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 371 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 272 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1110 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 860 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 956 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 38 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.114 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1456 ; 1.094 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 465 ; 0.147 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1845 ; 1.198 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 787 ; 1.780 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 609 ; 2.680 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D7P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.541 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAC SCIENCE DIP-2030 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25276 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 22.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1BMZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TTR PH 4.0 CRYSTALS WERE GROWN IN THE REMARK 280 PRESENCE OF 0.1 M SODIUM ACETATE (PH 4.0), 100 MM KCL, 1 MM EDTA REMARK 280 AND 0.3-0.5 M AMMONIUM SULFATE WHICH WAS EQUILIBRATED AGAINST 2 REMARK 280 M AMMONIUM SULFATE IN HANGING DROP, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 21.61200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.54100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.61200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.54100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 86.44800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 179 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 144 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 165 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 176 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 125 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 PRO B 125 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ASP B 38 CB CG OD1 OD2 REMARK 470 ASP B 39 CB CG OD1 OD2 REMARK 470 THR B 40 OG1 CG2 REMARK 470 LYS B 80 CB CG CD CE NZ REMARK 470 PRO B 86 CB CG CD REMARK 470 ARG B 104 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 86 N - CA - C ANGL. DEV. = -25.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 38 33.82 102.28 REMARK 500 ASP B 39 39.48 14.90 REMARK 500 PRO B 86 81.36 -155.01 REMARK 500 PHE B 87 74.67 0.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 85 PRO B 86 -95.60 REMARK 500 PRO B 86 PHE B 87 102.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BMZ RELATED DB: PDB REMARK 900 WT-TTR AT PH 7.4 REMARK 900 RELATED ID: 3CBR RELATED DB: PDB REMARK 900 WT-TTR AT PH 3.5 DBREF 3D7P A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 3D7P B 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 B 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 B 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 B 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 B 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 B 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 B 127 TRP LYS ALA LEU GLY ILE SER PRO PHE HIS GLU HIS ALA SEQRES 8 B 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 B 127 TYR THR ILE ALA ALA LEU LEU SER PRO TYR SER TYR SER SEQRES 10 B 127 THR THR ALA VAL VAL THR ASN PRO LYS GLU FORMUL 3 HOH *157(H2 O) HELIX 1 1 ASP A 74 LEU A 82 1 9 HELIX 2 2 THR B 75 GLY B 83 1 9 SHEET 1 A 8 SER A 23 PRO A 24 0 SHEET 2 A 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 A 8 ARG A 104 SER A 112 1 O ALA A 109 N LYS A 15 SHEET 4 A 8 SER A 115 THR A 123 -1 O VAL A 121 N THR A 106 SHEET 5 A 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 A 8 ARG B 104 SER B 112 -1 N LEU B 110 O SER B 117 SHEET 7 A 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 A 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 B 8 GLU A 54 LEU A 55 0 SHEET 2 B 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 B 8 ARG A 104 SER A 112 1 O ALA A 109 N LYS A 15 SHEET 4 B 8 SER A 115 THR A 123 -1 O VAL A 121 N THR A 106 SHEET 5 B 8 SER B 115 THR B 123 -1 O THR B 118 N TYR A 116 SHEET 6 B 8 ARG B 104 SER B 112 -1 N LEU B 110 O SER B 117 SHEET 7 B 8 LEU B 12 ASP B 18 1 N LEU B 17 O LEU B 111 SHEET 8 B 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 C 8 TRP A 41 LYS A 48 0 SHEET 2 C 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 C 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 C 8 HIS A 88 ALA A 97 -1 O ALA A 91 N ILE A 73 SHEET 5 C 8 HIS B 90 ALA B 97 -1 O HIS B 90 N VAL A 94 SHEET 6 C 8 GLY B 67 ASP B 74 -1 N TYR B 69 O PHE B 95 SHEET 7 C 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 C 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 CRYST1 43.224 85.082 62.920 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015893 0.00000 TER 888 ASN A 124 TER 1756 ASN B 124 HETATM 1757 O HOH A 128 53.477 10.829 16.509 1.00 23.24 O HETATM 1758 O HOH A 129 31.725 23.710 24.428 1.00 25.75 O HETATM 1759 O HOH A 130 51.512 7.633 17.544 1.00 22.99 O HETATM 1760 O HOH A 131 54.833 14.332 24.878 1.00 25.63 O HETATM 1761 O HOH A 132 43.165 7.059 32.788 1.00 30.71 O HETATM 1762 O HOH A 133 50.536 16.151 34.887 1.00 28.68 O HETATM 1763 O HOH A 134 45.053 23.348 27.391 1.00 26.70 O HETATM 1764 O HOH A 135 43.402 -0.050 18.121 0.50 26.30 O HETATM 1765 O HOH A 136 42.036 3.114 21.569 1.00 26.31 O HETATM 1766 O HOH A 137 52.327 8.913 14.888 1.00 23.11 O HETATM 1767 O HOH A 138 57.394 -4.193 27.589 1.00 27.73 O HETATM 1768 O HOH A 139 39.136 22.352 34.996 1.00 33.96 O HETATM 1769 O HOH A 140 54.737 14.993 11.683 1.00 28.72 O HETATM 1770 O HOH A 141 57.076 5.046 27.749 1.00 28.32 O HETATM 1771 O HOH A 142 33.577 19.076 41.538 1.00 33.23 O HETATM 1772 O HOH A 143 46.414 14.107 14.878 1.00 28.48 O HETATM 1773 O HOH A 144 45.587 21.727 33.924 1.00 31.52 O HETATM 1774 O HOH A 145 31.618 17.045 19.202 1.00 35.06 O HETATM 1775 O HOH A 146 59.527 9.373 25.393 1.00 32.96 O HETATM 1776 O HOH A 147 32.731 26.569 42.936 1.00 29.07 O HETATM 1777 O HOH A 148 47.519 23.957 26.565 1.00 27.24 O HETATM 1778 O HOH A 149 45.243 24.255 30.045 1.00 28.18 O HETATM 1779 O HOH A 150 43.031 13.352 34.269 1.00 29.22 O HETATM 1780 O HOH A 151 39.918 14.747 35.611 1.00 29.70 O HETATM 1781 O HOH A 152 27.694 18.984 20.689 1.00 41.25 O HETATM 1782 O HOH A 153 27.820 14.096 25.831 1.00 35.71 O HETATM 1783 O HOH A 154 44.195 20.672 16.040 1.00 37.95 O HETATM 1784 O HOH A 155 27.636 21.215 22.798 1.00 36.04 O HETATM 1785 O HOH A 156 48.230 11.494 36.856 1.00 36.07 O HETATM 1786 O HOH A 157 49.229 19.648 22.168 1.00 30.26 O HETATM 1787 O HOH A 158 36.238 22.735 40.949 1.00 36.20 O HETATM 1788 O HOH A 159 59.014 3.270 21.992 1.00 46.89 O HETATM 1789 O HOH A 160 34.236 20.920 16.716 1.00 42.59 O HETATM 1790 O HOH A 161 48.750 0.814 17.281 1.00 34.21 O HETATM 1791 O HOH A 162 35.289 5.981 32.138 1.00 33.98 O HETATM 1792 O HOH A 163 31.494 14.662 34.536 1.00 35.34 O HETATM 1793 O HOH A 164 31.768 18.857 17.310 1.00 48.79 O HETATM 1794 O HOH A 165 44.656 20.252 36.093 1.00 40.03 O HETATM 1795 O HOH A 166 49.354 0.743 33.057 1.00 40.78 O HETATM 1796 O HOH A 167 43.318 1.310 23.826 1.00 40.12 O HETATM 1797 O HOH A 168 49.961 22.540 22.850 1.00 46.17 O HETATM 1798 O HOH A 169 35.419 15.934 40.653 1.00 43.50 O HETATM 1799 O HOH A 170 47.863 25.456 24.358 1.00 46.91 O HETATM 1800 O HOH A 171 56.766 12.689 25.675 1.00 37.49 O HETATM 1801 O HOH A 172 58.612 8.290 27.557 1.00 51.19 O HETATM 1802 O HOH A 173 50.718 12.063 35.878 1.00 34.38 O HETATM 1803 O HOH A 174 47.496 16.273 36.553 1.00 42.20 O HETATM 1804 O HOH A 175 47.760 12.645 39.432 1.00 45.32 O HETATM 1805 O HOH A 176 30.635 11.614 23.560 1.00 40.29 O HETATM 1806 O HOH A 177 26.494 12.887 28.746 1.00 35.47 O HETATM 1807 O HOH A 178 55.048 8.461 38.038 1.00 38.06 O HETATM 1808 O HOH A 179 64.834 0.002 27.572 0.50 43.22 O HETATM 1809 O HOH A 180 39.777 21.740 15.203 1.00 50.26 O HETATM 1810 O HOH A 181 28.741 11.156 26.295 1.00 37.63 O HETATM 1811 O HOH A 182 59.013 16.022 31.765 1.00 43.79 O HETATM 1812 O HOH A 183 61.451 14.562 22.001 1.00 36.26 O HETATM 1813 O HOH A 184 22.393 11.970 34.330 1.00 39.67 O HETATM 1814 O HOH A 185 48.951 24.499 29.074 1.00 40.35 O HETATM 1815 O HOH A 186 48.632 6.109 37.838 1.00 53.13 O HETATM 1816 O HOH A 187 52.133 5.711 37.847 1.00 38.07 O HETATM 1817 O HOH A 188 64.858 11.226 17.600 1.00 40.38 O HETATM 1818 O HOH A 189 57.529 17.473 18.469 1.00 56.54 O HETATM 1819 O HOH A 190 67.012 7.230 22.155 1.00 60.52 O HETATM 1820 O HOH A 191 58.020 7.368 5.589 1.00 39.98 O HETATM 1821 O HOH A 192 38.815 21.895 37.668 1.00 46.72 O HETATM 1822 O HOH A 193 39.823 25.118 32.708 1.00 42.96 O HETATM 1823 O HOH A 194 37.503 9.269 34.112 1.00 44.41 O HETATM 1824 O HOH A 195 50.184 21.235 15.099 1.00 44.58 O HETATM 1825 O HOH A 196 40.614 28.269 18.152 1.00 53.68 O HETATM 1826 O HOH A 197 59.736 -4.135 24.781 1.00 59.36 O HETATM 1827 O HOH A 198 28.085 2.894 33.174 1.00 44.69 O HETATM 1828 O HOH A 199 59.144 -2.348 28.744 1.00 45.45 O HETATM 1829 O HOH A 200 29.427 23.741 22.967 1.00 50.68 O HETATM 1830 O HOH A 201 55.852 1.782 33.056 1.00 51.66 O HETATM 1831 O HOH A 202 45.006 2.613 25.956 1.00 43.96 O HETATM 1832 O HOH A 203 60.704 17.064 13.067 1.00 58.35 O HETATM 1833 O HOH A 204 27.588 6.160 30.263 1.00 48.72 O HETATM 1834 O HOH A 205 58.713 -6.755 27.232 1.00 45.63 O HETATM 1835 O HOH A 206 20.955 14.399 25.916 1.00 51.88 O HETATM 1836 O HOH A 207 26.531 13.700 23.194 1.00 40.76 O HETATM 1837 O HOH A 208 49.706 14.389 36.814 1.00 49.45 O HETATM 1838 O HOH A 209 59.947 -3.558 20.575 1.00 37.74 O HETATM 1839 O HOH A 210 46.624 -1.724 30.104 1.00 52.80 O HETATM 1840 O HOH A 211 32.623 15.044 17.788 1.00 44.74 O HETATM 1841 O HOH A 212 60.707 4.398 29.610 1.00 56.91 O HETATM 1842 O HOH A 213 43.558 27.167 22.304 1.00 46.29 O HETATM 1843 O HOH A 214 43.533 23.684 19.727 1.00 49.24 O HETATM 1844 O HOH A 215 52.470 1.058 36.544 1.00 48.42 O HETATM 1845 O HOH A 216 30.968 27.267 24.700 1.00 49.80 O HETATM 1846 O HOH A 217 61.182 16.715 19.962 1.00 42.46 O HETATM 1847 O HOH A 218 43.648 25.604 31.692 1.00 46.84 O HETATM 1848 O HOH A 219 41.767 18.956 38.934 1.00 50.74 O HETATM 1849 O HOH A 220 50.099 9.895 17.119 1.00 38.14 O HETATM 1850 O HOH A 221 31.000 12.808 36.976 1.00 51.24 O HETATM 1851 O HOH A 222 48.752 8.624 37.035 1.00 39.35 O HETATM 1852 O HOH A 223 26.477 10.405 27.529 1.00 40.81 O HETATM 1853 O HOH A 224 29.780 17.121 34.270 1.00 41.80 O HETATM 1854 O HOH A 225 41.640 21.533 38.414 1.00 56.55 O HETATM 1855 O HOH A 226 54.603 18.073 17.763 1.00 36.23 O HETATM 1856 O HOH A 227 53.141 7.395 39.635 1.00 62.25 O HETATM 1857 O HOH A 228 52.544 20.284 15.558 1.00 43.21 O HETATM 1858 O HOH A 229 63.927 13.817 21.488 1.00 48.33 O HETATM 1859 O HOH A 230 38.147 23.815 14.600 1.00 48.72 O HETATM 1860 O HOH A 231 34.594 27.689 28.663 1.00 43.38 O HETATM 1861 O HOH B 128 46.938 8.794 9.740 1.00 23.28 O HETATM 1862 O HOH B 129 37.098 2.337 14.819 1.00 24.31 O HETATM 1863 O HOH B 130 35.603 11.807 12.308 1.00 34.13 O HETATM 1864 O HOH B 131 55.351 12.972 8.937 1.00 31.74 O HETATM 1865 O HOH B 132 38.895 1.829 16.773 1.00 26.05 O HETATM 1866 O HOH B 133 57.088 11.754 5.195 1.00 35.36 O HETATM 1867 O HOH B 134 57.311 19.770 10.967 1.00 39.73 O HETATM 1868 O HOH B 135 35.193 11.662 -4.230 1.00 35.48 O HETATM 1869 O HOH B 136 53.268 24.080 7.153 1.00 44.49 O HETATM 1870 O HOH B 137 57.495 21.764 8.978 1.00 41.03 O HETATM 1871 O HOH B 138 39.857 21.402 -2.721 1.00 35.98 O HETATM 1872 O HOH B 139 35.902 20.812 9.084 1.00 45.80 O HETATM 1873 O HOH B 140 37.552 10.842 -5.191 1.00 37.06 O HETATM 1874 O HOH B 141 42.976 2.855 10.741 1.00 39.25 O HETATM 1875 O HOH B 142 34.966 15.634 -3.523 1.00 36.64 O HETATM 1876 O HOH B 143 30.779 13.501 20.497 1.00 31.18 O HETATM 1877 O HOH B 144 43.150 -0.003 13.272 0.50 39.85 O HETATM 1878 O HOH B 145 58.069 14.538 5.811 1.00 50.21 O HETATM 1879 O HOH B 146 42.985 13.087 -2.610 1.00 35.48 O HETATM 1880 O HOH B 147 53.934 14.522 -2.269 1.00 43.66 O HETATM 1881 O HOH B 148 40.172 23.242 4.100 1.00 35.83 O HETATM 1882 O HOH B 149 38.643 15.542 -5.290 1.00 44.90 O HETATM 1883 O HOH B 150 31.716 15.379 12.791 1.00 44.30 O HETATM 1884 O HOH B 151 46.257 22.239 16.586 1.00 46.61 O HETATM 1885 O HOH B 152 31.427 7.326 -6.110 1.00 41.28 O HETATM 1886 O HOH B 153 37.837 23.916 4.824 1.00 37.31 O HETATM 1887 O HOH B 154 50.511 5.987 0.025 1.00 39.70 O HETATM 1888 O HOH B 155 41.062 -0.043 16.416 1.00 37.85 O HETATM 1889 O HOH B 156 40.244 24.223 1.373 1.00 36.51 O HETATM 1890 O HOH B 157 48.099 8.558 -2.186 1.00 38.90 O HETATM 1891 O HOH B 158 50.443 15.792 -8.881 1.00 43.78 O HETATM 1892 O HOH B 159 33.005 10.594 23.650 1.00 31.30 O HETATM 1893 O HOH B 160 27.229 -4.362 12.461 1.00 43.58 O HETATM 1894 O HOH B 161 44.514 1.149 6.165 1.00 57.28 O HETATM 1895 O HOH B 162 36.522 24.504 2.330 1.00 46.86 O HETATM 1896 O HOH B 163 59.605 10.238 4.184 1.00 52.64 O HETATM 1897 O HOH B 164 44.833 5.694 -4.528 1.00 56.10 O HETATM 1898 O HOH B 165 43.204 0.086 -2.489 0.50 71.38 O HETATM 1899 O HOH B 166 45.857 2.381 3.937 1.00 51.92 O HETATM 1900 O HOH B 167 46.239 21.909 -3.595 1.00 40.45 O HETATM 1901 O HOH B 168 27.141 2.194 11.368 1.00 46.31 O HETATM 1902 O HOH B 169 56.355 2.321 2.130 1.00 43.14 O HETATM 1903 O HOH B 170 35.034 23.271 8.138 1.00 55.21 O HETATM 1904 O HOH B 171 38.091 5.256 -5.605 1.00 57.10 O HETATM 1905 O HOH B 172 40.879 19.465 -4.584 1.00 47.30 O HETATM 1906 O HOH B 173 34.249 4.951 -6.018 1.00 49.05 O HETATM 1907 O HOH B 174 63.200 12.234 -2.284 1.00 63.74 O HETATM 1908 O HOH B 175 49.126 22.395 -9.510 1.00 47.97 O HETATM 1909 O HOH B 176 21.609 -0.002 3.783 0.50 65.11 O HETATM 1910 O HOH B 177 29.448 -4.604 4.821 1.00 33.95 O HETATM 1911 O HOH B 178 37.170 25.343 6.919 1.00 45.16 O HETATM 1912 O HOH B 179 32.330 10.530 -6.176 1.00 50.70 O HETATM 1913 O HOH B 180 33.157 11.493 13.195 1.00 42.14 O MASTER 359 0 0 2 24 0 0 6 1907 2 0 20 END