HEADER TRANSFERASE 25-MAY-08 3D8V TITLE CRYSTAL STRUCTURE OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX TITLE 2 WITH URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL PROTEIN GLMU; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: [INCLUDES: UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE (EC COMPND 5 2.7.7.23) (N-ACETYLGLUCOSAMINE-1-PHOSPHATE URIDYLTRANSFERASE); COMPND 6 GLUCOSAMINE-1-PHOSPHATE N-ACETYLTRANSFERASE (EC 2.3.1.157)]; COMPND 7 EC: 2.7.7.23, 2.3.1.157; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GLMU, RV1018C, MT1046; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASES/SINGLE-STRANDED LEFT-HANDED KEYWDS 2 BETA-HELIX, ACYLTRANSFERASE, CELL SHAPE, CELL WALL KEYWDS 3 BIOGENESIS/DEGRADATION, CYTOPLASM, MAGNESIUM, METAL-BINDING, KEYWDS 4 MULTIFUNCTIONAL ENZYME, NUCLEOTIDYLTRANSFERASE, PEPTIDOGLYCAN KEYWDS 5 SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,C.J.SQUIRE,E.N.BAKER REVDAT 2 30-AUG-23 3D8V 1 REMARK REVDAT 1 10-MAR-09 3D8V 0 JRNL AUTH Z.ZHANG,E.M.BULLOCH,R.D.BUNKER,E.N.BAKER,C.J.SQUIRE JRNL TITL STRUCTURE AND FUNCTION OF GLMU FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 275 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19237750 JRNL DOI 10.1107/S0907444909001036 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30117 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.6300 - 2.5500 1.00 2575 116 0.2384 0.2743 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 49.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.90170 REMARK 3 B22 (A**2) : -4.90170 REMARK 3 B33 (A**2) : 2.99590 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3564 REMARK 3 ANGLE : 1.067 4884 REMARK 3 CHIRALITY : 0.064 604 REMARK 3 PLANARITY : 0.004 636 REMARK 3 DIHEDRAL : 17.544 1243 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5417 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.76800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 8000, 0.1 M CACODYLATE, 9% MPD, REMARK 280 12% ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.11900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.97767 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 120.59867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.11900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.97767 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 120.59867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.11900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.97767 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 120.59867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.11900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.97767 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 120.59867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.11900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.97767 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 120.59867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.11900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.97767 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 120.59867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.95534 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 241.19733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.95534 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 241.19733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.95534 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 241.19733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.95534 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 241.19733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.95534 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 241.19733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.95534 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 241.19733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 53080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 57.11900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -98.93301 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 114.23800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 400 REMARK 465 MET A 480 REMARK 465 ALA A 481 REMARK 465 CYS A 482 REMARK 465 GLN A 483 REMARK 465 GLN A 484 REMARK 465 PRO A 485 REMARK 465 THR A 486 REMARK 465 GLN A 487 REMARK 465 PRO A 488 REMARK 465 PRO A 489 REMARK 465 ASP A 490 REMARK 465 ALA A 491 REMARK 465 ASP A 492 REMARK 465 GLN A 493 REMARK 465 THR A 494 REMARK 465 PRO A 495 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 LYS A 46 CE NZ REMARK 470 ILE A 127 CD1 REMARK 470 ARG A 131 NH1 NH2 REMARK 470 VAL A 133 CG1 CG2 REMARK 470 ILE A 153 CD1 REMARK 470 MET A 162 CE REMARK 470 ILE A 189 CD1 REMARK 470 SER A 201 O REMARK 470 ILE A 214 CD1 REMARK 470 ILE A 216 CD1 REMARK 470 ASN A 397 CG OD1 ND2 REMARK 470 THR A 401 OG1 CG2 REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 ARG A 405 NH1 NH2 REMARK 470 ASN A 459 CG OD1 ND2 REMARK 470 ARG A 463 CZ NH1 NH2 REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 ARG A 465 CZ NH1 NH2 REMARK 470 GLN A 472 CG CD OE1 NE2 REMARK 470 ARG A 476 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 580 O HOH A 612 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 22.11 -146.43 REMARK 500 ASP A 59 34.15 -86.42 REMARK 500 ASN A 363 56.69 36.25 REMARK 500 SER A 450 -22.27 -143.28 REMARK 500 ARG A 465 47.01 -143.21 REMARK 500 ALA A 471 31.27 -81.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD1 A 496 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D98 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS, LIGAND- REMARK 900 FREE FORM REMARK 900 RELATED ID: 2QKX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GLMU FROM MYCOBACTERIUM TUBERCULOSIS IN REMARK 900 COMPLEX WITH N-ACETYL GLUCOSAMINE 1-PHOSPHATE DBREF 3D8V A 1 495 UNP P96382 GLMU_MYCTU 1 495 SEQRES 1 A 495 MET THR PHE PRO GLY ASP THR ALA VAL LEU VAL LEU ALA SEQRES 2 A 495 ALA GLY PRO GLY THR ARG MET ARG SER ASP THR PRO LYS SEQRES 3 A 495 VAL LEU HIS THR LEU ALA GLY ARG SER MET LEU SER HIS SEQRES 4 A 495 VAL LEU HIS ALA ILE ALA LYS LEU ALA PRO GLN ARG LEU SEQRES 5 A 495 ILE VAL VAL LEU GLY HIS ASP HIS GLN ARG ILE ALA PRO SEQRES 6 A 495 LEU VAL GLY GLU LEU ALA ASP THR LEU GLY ARG THR ILE SEQRES 7 A 495 ASP VAL ALA LEU GLN ASP ARG PRO LEU GLY THR GLY HIS SEQRES 8 A 495 ALA VAL LEU CYS GLY LEU SER ALA LEU PRO ASP ASP TYR SEQRES 9 A 495 ALA GLY ASN VAL VAL VAL THR SER GLY ASP THR PRO LEU SEQRES 10 A 495 LEU ASP ALA ASP THR LEU ALA ASP LEU ILE ALA THR HIS SEQRES 11 A 495 ARG ALA VAL SER ALA ALA VAL THR VAL LEU THR THR THR SEQRES 12 A 495 LEU ASP ASP PRO PHE GLY TYR GLY ARG ILE LEU ARG THR SEQRES 13 A 495 GLN ASP HIS GLU VAL MET ALA ILE VAL GLU GLN THR ASP SEQRES 14 A 495 ALA THR PRO SER GLN ARG GLU ILE ARG GLU VAL ASN ALA SEQRES 15 A 495 GLY VAL TYR ALA PHE ASP ILE ALA ALA LEU ARG SER ALA SEQRES 16 A 495 LEU SER ARG LEU SER SER ASN ASN ALA GLN GLN GLU LEU SEQRES 17 A 495 TYR LEU THR ASP VAL ILE ALA ILE LEU ARG SER ASP GLY SEQRES 18 A 495 GLN THR VAL HIS ALA SER HIS VAL ASP ASP SER ALA LEU SEQRES 19 A 495 VAL ALA GLY VAL ASN ASN ARG VAL GLN LEU ALA GLU LEU SEQRES 20 A 495 ALA SER GLU LEU ASN ARG ARG VAL VAL ALA ALA HIS GLN SEQRES 21 A 495 LEU ALA GLY VAL THR VAL VAL ASP PRO ALA THR THR TRP SEQRES 22 A 495 ILE ASP VAL ASP VAL THR ILE GLY ARG ASP THR VAL ILE SEQRES 23 A 495 HIS PRO GLY THR GLN LEU LEU GLY ARG THR GLN ILE GLY SEQRES 24 A 495 GLY ARG CYS VAL VAL GLY PRO ASP THR THR LEU THR ASP SEQRES 25 A 495 VAL ALA VAL GLY ASP GLY ALA SER VAL VAL ARG THR HIS SEQRES 26 A 495 GLY SER SER SER SER ILE GLY ASP GLY ALA ALA VAL GLY SEQRES 27 A 495 PRO PHE THR TYR LEU ARG PRO GLY THR ALA LEU GLY ALA SEQRES 28 A 495 ASP GLY LYS LEU GLY ALA PHE VAL GLU VAL LYS ASN SER SEQRES 29 A 495 THR ILE GLY THR GLY THR LYS VAL PRO HIS LEU THR TYR SEQRES 30 A 495 VAL GLY ASP ALA ASP ILE GLY GLU TYR SER ASN ILE GLY SEQRES 31 A 495 ALA SER SER VAL PHE VAL ASN TYR ASP GLY THR SER LYS SEQRES 32 A 495 ARG ARG THR THR VAL GLY SER HIS VAL ARG THR GLY SER SEQRES 33 A 495 ASP THR MET PHE VAL ALA PRO VAL THR ILE GLY ASP GLY SEQRES 34 A 495 ALA TYR THR GLY ALA GLY THR VAL VAL ARG GLU ASP VAL SEQRES 35 A 495 PRO PRO GLY ALA LEU ALA VAL SER ALA GLY PRO GLN ARG SEQRES 36 A 495 ASN ILE GLU ASN TRP VAL GLN ARG LYS ARG PRO GLY SER SEQRES 37 A 495 PRO ALA ALA GLN ALA SER LYS ARG ALA SER GLU MET ALA SEQRES 38 A 495 CYS GLN GLN PRO THR GLN PRO PRO ASP ALA ASP GLN THR SEQRES 39 A 495 PRO HET UD1 A 496 39 HETNAM UD1 URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE FORMUL 2 UD1 C17 H27 N3 O17 P2 FORMUL 3 HOH *147(H2 O) HELIX 1 1 GLY A 17 ARG A 21 5 5 HELIX 2 2 PRO A 25 LEU A 28 5 4 HELIX 3 3 MET A 36 LYS A 46 1 11 HELIX 4 4 ASP A 59 ARG A 62 5 4 HELIX 5 5 ILE A 63 LEU A 74 1 12 HELIX 6 6 GLY A 88 SER A 98 1 11 HELIX 7 7 ASP A 119 VAL A 133 1 15 HELIX 8 8 GLU A 166 ALA A 170 5 5 HELIX 9 9 SER A 173 ILE A 177 5 5 HELIX 10 10 ILE A 189 ARG A 198 1 10 HELIX 11 11 THR A 211 ASP A 220 1 10 HELIX 12 12 ASP A 231 ALA A 236 5 6 HELIX 13 13 ASN A 240 ALA A 262 1 23 HELIX 14 14 ASP A 268 ALA A 270 5 3 HELIX 15 15 ASN A 459 ARG A 465 1 7 HELIX 16 16 ALA A 471 SER A 478 1 8 SHEET 1 A 7 ASP A 79 LEU A 82 0 SHEET 2 A 7 ARG A 51 LEU A 56 1 N VAL A 54 O ASP A 79 SHEET 3 A 7 THR A 7 LEU A 12 1 N VAL A 9 O ARG A 51 SHEET 4 A 7 ASN A 107 SER A 112 1 O VAL A 109 N LEU A 10 SHEET 5 A 7 GLU A 179 ASP A 188 -1 O TYR A 185 N VAL A 110 SHEET 6 A 7 VAL A 137 THR A 143 -1 N LEU A 140 O VAL A 184 SHEET 7 A 7 VAL A 224 HIS A 228 1 O SER A 227 N VAL A 139 SHEET 1 B 2 THR A 30 LEU A 31 0 SHEET 2 B 2 ARG A 34 SER A 35 -1 O ARG A 34 N LEU A 31 SHEET 1 C 2 ARG A 152 ARG A 155 0 SHEET 2 C 2 VAL A 161 VAL A 165 -1 O VAL A 165 N ARG A 152 SHEET 1 D12 VAL A 437 VAL A 438 0 SHEET 2 D12 MET A 419 VAL A 421 1 N VAL A 421 O VAL A 438 SHEET 3 D12 VAL A 394 VAL A 396 1 N VAL A 394 O PHE A 420 SHEET 4 D12 LYS A 371 GLY A 379 1 N TYR A 377 O PHE A 395 SHEET 5 D12 LYS A 354 LYS A 362 1 N GLY A 356 O VAL A 372 SHEET 6 D12 THR A 341 LEU A 343 1 N TYR A 342 O VAL A 359 SHEET 7 D12 THR A 324 ILE A 331 1 N HIS A 325 O THR A 341 SHEET 8 D12 THR A 347 LEU A 349 1 O LEU A 349 N SER A 330 SHEET 9 D12 THR A 365 ILE A 366 1 O ILE A 366 N ALA A 348 SHEET 10 D12 ALA A 381 ILE A 383 1 O ILE A 383 N THR A 365 SHEET 11 D12 THR A 406 VAL A 408 1 O VAL A 408 N ASP A 382 SHEET 12 D12 THR A 425 ILE A 426 1 O ILE A 426 N THR A 407 SHEET 1 E11 THR A 265 VAL A 266 0 SHEET 2 E11 VAL A 285 ILE A 286 1 O ILE A 286 N THR A 265 SHEET 3 E11 VAL A 303 VAL A 304 1 O VAL A 304 N VAL A 285 SHEET 4 E11 SER A 320 VAL A 321 1 O VAL A 321 N VAL A 303 SHEET 5 E11 ALA A 336 VAL A 337 1 O VAL A 337 N SER A 320 SHEET 6 E11 LYS A 354 LYS A 362 1 O LEU A 355 N ALA A 336 SHEET 7 E11 THR A 341 LEU A 343 1 N TYR A 342 O VAL A 359 SHEET 8 E11 THR A 324 ILE A 331 1 N HIS A 325 O THR A 341 SHEET 9 E11 THR A 309 VAL A 315 1 N ALA A 314 O ILE A 331 SHEET 10 E11 GLN A 297 ILE A 298 1 N GLN A 297 O VAL A 315 SHEET 11 E11 THR A 279 ILE A 280 1 N THR A 279 O ILE A 298 SHEET 1 F11 THR A 265 VAL A 266 0 SHEET 2 F11 VAL A 285 ILE A 286 1 O ILE A 286 N THR A 265 SHEET 3 F11 VAL A 303 VAL A 304 1 O VAL A 304 N VAL A 285 SHEET 4 F11 SER A 320 VAL A 321 1 O VAL A 321 N VAL A 303 SHEET 5 F11 ALA A 336 VAL A 337 1 O VAL A 337 N SER A 320 SHEET 6 F11 LYS A 354 LYS A 362 1 O LEU A 355 N ALA A 336 SHEET 7 F11 THR A 341 LEU A 343 1 N TYR A 342 O VAL A 359 SHEET 8 F11 THR A 324 ILE A 331 1 N HIS A 325 O THR A 341 SHEET 9 F11 THR A 309 VAL A 315 1 N ALA A 314 O ILE A 331 SHEET 10 F11 THR A 290 LEU A 293 1 N LEU A 293 O LEU A 310 SHEET 11 F11 THR A 272 ILE A 274 1 N TRP A 273 O LEU A 292 SHEET 1 G 2 ASN A 388 ILE A 389 0 SHEET 2 G 2 ARG A 413 THR A 414 1 O THR A 414 N ASN A 388 SHEET 1 H 2 TYR A 431 THR A 432 0 SHEET 2 H 2 LEU A 447 ALA A 448 1 O ALA A 448 N TYR A 431 CISPEP 1 MET A 1 THR A 2 0 5.18 CISPEP 2 GLY A 5 ASP A 6 0 -5.26 CISPEP 3 GLY A 305 PRO A 306 0 2.60 CISPEP 4 GLY A 338 PRO A 339 0 2.83 CISPEP 5 ALA A 422 PRO A 423 0 0.25 SITE 1 AC1 19 LEU A 12 ALA A 14 GLY A 15 GLN A 83 SITE 2 AC1 19 PRO A 86 LEU A 87 GLY A 88 THR A 89 SITE 3 AC1 19 ALA A 92 SER A 112 TYR A 150 GLY A 151 SITE 4 AC1 19 GLU A 166 ASN A 181 THR A 211 ASN A 239 SITE 5 AC1 19 HOH A 497 HOH A 517 HOH A 586 CRYST1 114.238 114.238 361.796 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008754 0.005054 0.000000 0.00000 SCALE2 0.000000 0.010108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002764 0.00000