HEADER TRANSPORT PROTEIN 27-MAY-08 3D9B TITLE SYMMETRIC STRUCTURE OF E. COLI ACRB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACRIFLAVINE RESISTANCE PROTEIN B; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 STRAIN: BL21(DE3) KEYWDS ALPHA-HELICES, TRANSMEMBRANE PROTEIN, INNER MEMBRANE, TRANSPORT, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.VEESLER,S.BLANGY,C.CAMBILLAU,G.SCIARA REVDAT 6 30-AUG-23 3D9B 1 REMARK REVDAT 5 21-MAR-12 3D9B 1 JRNL REVDAT 4 13-JUL-11 3D9B 1 VERSN REVDAT 3 24-FEB-09 3D9B 1 VERSN REVDAT 2 14-OCT-08 3D9B 1 JRNL REMARK REVDAT 1 01-JUL-08 3D9B 0 JRNL AUTH D.VEESLER,S.BLANGY,C.CAMBILLAU,G.SCIARA JRNL TITL THERE IS A BABY IN THE BATH WATER: ACRB CONTAMINATION IS A JRNL TITL 2 MAJOR PROBLEM IN MEMBRANE-PROTEIN CRYSTALLIZATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 64 880 2008 JRNL REFN ESSN 1744-3091 JRNL PMID 18931428 JRNL DOI 10.1107/S1744309108028248 REMARK 2 REMARK 2 RESOLUTION. 3.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.291 REMARK 3 R VALUE (WORKING SET) : 0.289 REMARK 3 FREE R VALUE : 0.355 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1152 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1961 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7950 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 67.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.656 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.634 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 87.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.871 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.802 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8018 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5236 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10905 ; 1.408 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12823 ; 1.075 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1044 ; 8.433 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;39.052 ;24.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1302 ;18.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;13.982 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1285 ; 0.190 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8994 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1580 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2362 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5523 ; 0.200 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3976 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4227 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 247 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 4 ; 0.149 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.262 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 88 ; 0.262 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.112 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6650 ; 0.639 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2133 ; 0.058 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8325 ; 0.698 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3277 ; 0.615 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2580 ; 0.951 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 61.0176 27.9102 21.2523 REMARK 3 T TENSOR REMARK 3 T11: -0.1324 T22: 0.0266 REMARK 3 T33: -0.2062 T12: 0.4340 REMARK 3 T13: 0.2552 T23: 0.5309 REMARK 3 L TENSOR REMARK 3 L11: 10.2470 L22: 3.2058 REMARK 3 L33: 13.9303 L12: 2.4087 REMARK 3 L13: 8.8827 L23: 6.1433 REMARK 3 S TENSOR REMARK 3 S11: -0.7213 S12: 0.3904 S13: 0.3238 REMARK 3 S21: -0.2555 S22: -0.5542 S23: -0.9240 REMARK 3 S31: 1.7532 S32: 0.0614 S33: 1.2755 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 55.0897 44.8282 68.3220 REMARK 3 T TENSOR REMARK 3 T11: 0.0010 T22: -0.1756 REMARK 3 T33: 0.3010 T12: 0.2712 REMARK 3 T13: 0.0013 T23: 0.1975 REMARK 3 L TENSOR REMARK 3 L11: 4.3656 L22: 0.3285 REMARK 3 L33: 6.6431 L12: -0.4832 REMARK 3 L13: -3.9692 L23: 1.3528 REMARK 3 S TENSOR REMARK 3 S11: 0.7366 S12: 0.5584 S13: 0.1216 REMARK 3 S21: 0.2903 S22: -0.1287 S23: -0.2655 REMARK 3 S31: 0.2735 S32: -0.5715 S33: -0.6078 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 61.3982 51.2284 70.0680 REMARK 3 T TENSOR REMARK 3 T11: -0.0833 T22: 0.0719 REMARK 3 T33: -0.1741 T12: 0.1826 REMARK 3 T13: 0.0521 T23: -0.0900 REMARK 3 L TENSOR REMARK 3 L11: 1.0051 L22: 5.2723 REMARK 3 L33: 5.6986 L12: 2.2064 REMARK 3 L13: 1.5534 L23: 2.2206 REMARK 3 S TENSOR REMARK 3 S11: -0.1711 S12: -0.0662 S13: -0.5153 REMARK 3 S21: -0.0786 S22: -0.0723 S23: -0.1813 REMARK 3 S31: 0.1417 S32: 1.0599 S33: 0.2434 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6654 33.9731 75.1268 REMARK 3 T TENSOR REMARK 3 T11: -0.1123 T22: 0.0910 REMARK 3 T33: -0.2434 T12: 0.2521 REMARK 3 T13: 0.0189 T23: 0.0834 REMARK 3 L TENSOR REMARK 3 L11: 1.8494 L22: 5.4982 REMARK 3 L33: 4.0010 L12: 2.4356 REMARK 3 L13: 1.7158 L23: 3.0433 REMARK 3 S TENSOR REMARK 3 S11: 0.3769 S12: 0.1475 S13: 0.1512 REMARK 3 S21: -0.0921 S22: -0.0179 S23: -0.4288 REMARK 3 S31: 0.0600 S32: 0.2905 S33: -0.3590 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 240 REMARK 3 ORIGIN FOR THE GROUP (A): 65.4675 25.5536 97.2246 REMARK 3 T TENSOR REMARK 3 T11: 0.0042 T22: 0.0041 REMARK 3 T33: -0.4766 T12: -0.0206 REMARK 3 T13: -0.0247 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 2.7318 L22: 0.5350 REMARK 3 L33: 0.5983 L12: -0.0092 REMARK 3 L13: -0.1793 L23: -0.5596 REMARK 3 S TENSOR REMARK 3 S11: 0.3170 S12: -0.5725 S13: -0.3785 REMARK 3 S21: 0.0554 S22: -0.0834 S23: 0.0517 REMARK 3 S31: -0.2720 S32: 0.1750 S33: -0.2336 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 241 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 51.1298 26.0303 98.0341 REMARK 3 T TENSOR REMARK 3 T11: -0.0952 T22: -0.1034 REMARK 3 T33: -0.7135 T12: -0.1176 REMARK 3 T13: 0.2815 T23: 0.2088 REMARK 3 L TENSOR REMARK 3 L11: 9.1529 L22: 3.2871 REMARK 3 L33: 10.4731 L12: -0.0923 REMARK 3 L13: 7.5291 L23: 0.1896 REMARK 3 S TENSOR REMARK 3 S11: 0.1772 S12: -0.6773 S13: -0.5124 REMARK 3 S21: 0.6795 S22: 0.1130 S23: 0.2459 REMARK 3 S31: 0.4268 S32: -0.8582 S33: -0.2902 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 48.0485 25.6651 63.3234 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.3703 REMARK 3 T33: -0.2563 T12: 0.1938 REMARK 3 T13: -0.0558 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 8.1205 L22: 4.5203 REMARK 3 L33: 0.8896 L12: -6.0586 REMARK 3 L13: 2.6877 L23: -2.0053 REMARK 3 S TENSOR REMARK 3 S11: 1.5285 S12: 1.6216 S13: -0.2501 REMARK 3 S21: -0.4300 S22: -1.4610 S23: -0.4178 REMARK 3 S31: 0.6931 S32: 1.0315 S33: -0.0675 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2772 30.5537 27.1918 REMARK 3 T TENSOR REMARK 3 T11: -0.2199 T22: -0.0861 REMARK 3 T33: -0.3743 T12: 0.1205 REMARK 3 T13: 0.0020 T23: -0.0856 REMARK 3 L TENSOR REMARK 3 L11: 6.0342 L22: 5.5153 REMARK 3 L33: 6.6644 L12: -1.1260 REMARK 3 L13: 0.2770 L23: 0.3752 REMARK 3 S TENSOR REMARK 3 S11: -0.3062 S12: -0.3832 S13: -0.3278 REMARK 3 S21: 0.2301 S22: 0.3076 S23: -0.7075 REMARK 3 S31: 1.5946 S32: 0.6548 S33: -0.0014 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 390 A 465 REMARK 3 ORIGIN FOR THE GROUP (A): 50.5361 41.4982 21.7569 REMARK 3 T TENSOR REMARK 3 T11: -0.4505 T22: 0.2490 REMARK 3 T33: 0.6116 T12: 0.2261 REMARK 3 T13: -0.1409 T23: 0.1708 REMARK 3 L TENSOR REMARK 3 L11: 1.5486 L22: 2.3451 REMARK 3 L33: 5.7592 L12: -0.4177 REMARK 3 L13: -2.9783 L23: 1.0676 REMARK 3 S TENSOR REMARK 3 S11: -0.3506 S12: -0.6586 S13: 0.9035 REMARK 3 S21: -0.3261 S22: -0.3716 S23: -0.2551 REMARK 3 S31: 0.2379 S32: 0.8478 S33: 0.7221 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 466 A 539 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7678 39.4418 13.9228 REMARK 3 T TENSOR REMARK 3 T11: -0.6942 T22: -0.0760 REMARK 3 T33: -0.4585 T12: 0.1359 REMARK 3 T13: -0.0739 T23: 0.1656 REMARK 3 L TENSOR REMARK 3 L11: 0.7665 L22: 5.5286 REMARK 3 L33: 4.7715 L12: -0.7494 REMARK 3 L13: -1.0911 L23: -2.1876 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.0878 S13: 0.1970 REMARK 3 S21: -0.8955 S22: -0.2679 S23: -0.3577 REMARK 3 S31: 0.6735 S32: -0.0301 S33: 0.2701 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 540 A 615 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5640 45.9945 57.3628 REMARK 3 T TENSOR REMARK 3 T11: -0.1361 T22: 0.1736 REMARK 3 T33: -0.2507 T12: -0.1157 REMARK 3 T13: -0.1338 T23: 0.1476 REMARK 3 L TENSOR REMARK 3 L11: 0.0327 L22: 1.7502 REMARK 3 L33: 4.1655 L12: -0.1099 REMARK 3 L13: -0.0102 L23: -2.3638 REMARK 3 S TENSOR REMARK 3 S11: 0.2301 S12: -0.0873 S13: 0.2609 REMARK 3 S21: 0.1759 S22: 0.0887 S23: 0.3009 REMARK 3 S31: -0.3279 S32: -0.3112 S33: -0.3188 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 616 A 633 REMARK 3 ORIGIN FOR THE GROUP (A): 38.8349 38.4184 70.8101 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: -0.0072 REMARK 3 T33: -0.5421 T12: -0.1453 REMARK 3 T13: -0.2218 T23: 0.4043 REMARK 3 L TENSOR REMARK 3 L11: 8.1690 L22: 7.2280 REMARK 3 L33: 18.2896 L12: -6.4500 REMARK 3 L13: -12.2117 L23: 9.9143 REMARK 3 S TENSOR REMARK 3 S11: 0.7924 S12: 0.5608 S13: 1.4121 REMARK 3 S21: -0.7331 S22: 1.0667 S23: -0.6952 REMARK 3 S31: -1.4369 S32: 2.8010 S33: -1.8591 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 634 A 677 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7921 41.8568 60.9000 REMARK 3 T TENSOR REMARK 3 T11: -0.1675 T22: -0.1820 REMARK 3 T33: -0.4499 T12: 0.1081 REMARK 3 T13: -0.1993 T23: 0.2938 REMARK 3 L TENSOR REMARK 3 L11: 9.2352 L22: 9.9581 REMARK 3 L33: 8.1249 L12: 2.1385 REMARK 3 L13: 1.3083 L23: 4.3925 REMARK 3 S TENSOR REMARK 3 S11: 0.4914 S12: 1.4343 S13: 0.7386 REMARK 3 S21: -0.1921 S22: -0.0337 S23: -0.0297 REMARK 3 S31: -0.6284 S32: -0.5055 S33: -0.4577 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 678 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7721 61.9848 80.9890 REMARK 3 T TENSOR REMARK 3 T11: -0.3130 T22: -0.0485 REMARK 3 T33: 0.2015 T12: 0.1082 REMARK 3 T13: 0.1645 T23: -0.1755 REMARK 3 L TENSOR REMARK 3 L11: 0.0585 L22: 2.9899 REMARK 3 L33: 6.6992 L12: 0.1549 REMARK 3 L13: -0.6069 L23: -2.6272 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: -0.2328 S13: 0.5271 REMARK 3 S21: 0.3231 S22: -0.2269 S23: 0.8325 REMARK 3 S31: -1.1160 S32: -0.3304 S33: 0.1759 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 741 A 792 REMARK 3 ORIGIN FOR THE GROUP (A): 52.4619 37.1383 97.8082 REMARK 3 T TENSOR REMARK 3 T11: -0.1004 T22: -0.0333 REMARK 3 T33: -0.7838 T12: -0.1456 REMARK 3 T13: 0.1723 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 4.6286 L22: 9.8675 REMARK 3 L33: 0.7256 L12: -2.6853 REMARK 3 L13: 0.1859 L23: 1.9020 REMARK 3 S TENSOR REMARK 3 S11: 0.0950 S12: -0.7594 S13: -0.0420 REMARK 3 S21: 0.3622 S22: -0.2341 S23: 0.2363 REMARK 3 S31: -0.0775 S32: -0.1976 S33: 0.1391 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 793 A 829 REMARK 3 ORIGIN FOR THE GROUP (A): 49.5173 54.7433 91.3310 REMARK 3 T TENSOR REMARK 3 T11: -0.0907 T22: 0.0756 REMARK 3 T33: -0.0609 T12: -0.1446 REMARK 3 T13: 0.1497 T23: -0.1368 REMARK 3 L TENSOR REMARK 3 L11: 0.5766 L22: 1.3850 REMARK 3 L33: 0.2033 L12: -0.8937 REMARK 3 L13: -0.3424 L23: 0.5306 REMARK 3 S TENSOR REMARK 3 S11: 0.5173 S12: -0.0355 S13: 0.4717 REMARK 3 S21: 0.3996 S22: -0.1121 S23: 0.5877 REMARK 3 S31: -0.0891 S32: 0.3484 S33: -0.4051 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 830 A 865 REMARK 3 ORIGIN FOR THE GROUP (A): 44.5715 66.7959 62.3663 REMARK 3 T TENSOR REMARK 3 T11: -0.3583 T22: -0.0712 REMARK 3 T33: -0.1196 T12: 0.1004 REMARK 3 T13: -0.0060 T23: 0.1299 REMARK 3 L TENSOR REMARK 3 L11: 11.9651 L22: 6.0667 REMARK 3 L33: 10.2920 L12: -2.3280 REMARK 3 L13: 5.3788 L23: -2.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.4094 S12: 1.9012 S13: 0.6021 REMARK 3 S21: -0.8774 S22: 0.0677 S23: 0.6693 REMARK 3 S31: -1.4699 S32: -0.1615 S33: 0.3417 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 866 A 900 REMARK 3 ORIGIN FOR THE GROUP (A): 51.9116 59.9875 28.4823 REMARK 3 T TENSOR REMARK 3 T11: -0.1531 T22: 0.7137 REMARK 3 T33: 0.2687 T12: 0.0631 REMARK 3 T13: 0.2499 T23: -0.6391 REMARK 3 L TENSOR REMARK 3 L11: 4.0431 L22: 8.3184 REMARK 3 L33: 0.9525 L12: -0.3387 REMARK 3 L13: -1.0011 L23: 2.5009 REMARK 3 S TENSOR REMARK 3 S11: -0.1070 S12: -0.2169 S13: 0.6063 REMARK 3 S21: 0.7907 S22: 1.4743 S23: -0.2143 REMARK 3 S31: -0.6873 S32: 3.5726 S33: -1.3672 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 901 A 974 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5588 51.3205 20.4082 REMARK 3 T TENSOR REMARK 3 T11: -0.4322 T22: -0.1963 REMARK 3 T33: -0.0338 T12: 0.0174 REMARK 3 T13: -0.1823 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.5486 L22: 1.2102 REMARK 3 L33: 11.2111 L12: 0.1201 REMARK 3 L13: 1.8754 L23: -0.9066 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: 0.1552 S13: 0.1712 REMARK 3 S21: -0.0064 S22: 0.1840 S23: -0.2187 REMARK 3 S31: -0.2877 S32: 0.2658 S33: -0.2517 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 975 A 1044 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6039 51.1297 19.6796 REMARK 3 T TENSOR REMARK 3 T11: -0.2426 T22: -0.2824 REMARK 3 T33: -0.2811 T12: 0.1226 REMARK 3 T13: -0.1528 T23: -0.1527 REMARK 3 L TENSOR REMARK 3 L11: 2.8057 L22: 1.1398 REMARK 3 L33: 4.7140 L12: -0.4519 REMARK 3 L13: 2.7573 L23: 1.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.3730 S12: 0.1724 S13: 0.1244 REMARK 3 S21: 0.0836 S22: 0.3933 S23: -0.7282 REMARK 3 S31: -0.5085 S32: -0.4757 S33: -0.7663 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3D9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28788 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.420 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.120 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 11.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.24 REMARK 200 R MERGE FOR SHELL (I) : 0.61900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2I6W REMARK 200 REMARK 200 REMARK: THE TOTAL NUMBER OF ALL REFLECTIONS COLLECTED IS 176182 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 31% PEG 400, PH 6.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 72.87000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.07151 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 171.33333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 72.87000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 42.07151 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 171.33333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 72.87000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 42.07151 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 171.33333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 72.87000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 42.07151 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 171.33333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 72.87000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 42.07151 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 171.33333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 72.87000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 42.07151 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 171.33333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 84.14303 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 342.66667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 84.14303 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 342.66667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 84.14303 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 342.66667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 84.14303 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 342.66667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 84.14303 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 342.66667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 84.14303 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 342.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 116870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 145.74000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 72.87000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 126.21454 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A1201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1046 REMARK 465 ASP A 1047 REMARK 465 HIS A 1048 REMARK 465 HIS A 1049 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 29 CG CD CE NZ REMARK 480 LYS A 322 CD CE NZ REMARK 480 LYS A 334 CG CD CE NZ REMARK 480 LYS A 428 CB CG CD CE NZ REMARK 480 LYS A 433 CB CG CD CE NZ REMARK 480 ARG A 468 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 498 CG CD CE NZ REMARK 480 LYS A 510 CB CG CD CE NZ REMARK 480 LYS A 522 CG CD CE NZ REMARK 480 ARG A 653 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 659 CB CG CD CE NZ REMARK 480 LEU A 674 CB CG CD1 CD2 REMARK 480 LYS A 708 CB CG CD CE NZ REMARK 480 LYS A 735 CE NZ REMARK 480 LYS A 835 CG CD CE NZ REMARK 480 GLU A 842 CD OE1 OE2 REMARK 480 LYS A 955 CG CD CE NZ REMARK 480 LYS A 958 CG CD CE NZ REMARK 480 ARG A 1035 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 101 NZ LYS A 131 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 510 CB - CA - C ANGL. DEV. = 14.2 DEGREES REMARK 500 ILE A 671 CB - CA - C ANGL. DEV. = -13.7 DEGREES REMARK 500 GLU A 673 C - N - CA ANGL. DEV. = -20.5 DEGREES REMARK 500 GLN A 865 N - CA - C ANGL. DEV. = 29.4 DEGREES REMARK 500 GLU A 866 N - CA - C ANGL. DEV. = 30.7 DEGREES REMARK 500 GLY A 957 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 LYS A1036 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 HIS A1044 N - CA - C ANGL. DEV. = 21.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 4.29 -67.81 REMARK 500 THR A 37 98.26 -60.88 REMARK 500 PRO A 40 150.25 -48.53 REMARK 500 SER A 48 96.92 -163.56 REMARK 500 VAL A 61 -62.25 -128.08 REMARK 500 ASN A 74 3.22 47.14 REMARK 500 TYR A 77 143.69 178.81 REMARK 500 SER A 84 28.46 -68.73 REMARK 500 GLN A 89 104.12 -167.64 REMARK 500 SER A 133 159.39 -45.72 REMARK 500 LEU A 137 -69.96 -99.21 REMARK 500 ASP A 146 9.68 -69.01 REMARK 500 THR A 150 -175.94 -68.84 REMARK 500 SER A 170 153.26 -48.74 REMARK 500 ASP A 174 125.10 178.72 REMARK 500 GLN A 181 155.26 -48.71 REMARK 500 ASN A 211 45.56 -96.44 REMARK 500 ALA A 216 28.96 -147.55 REMARK 500 ALA A 236 -140.02 -113.05 REMARK 500 ILE A 249 144.91 -38.88 REMARK 500 ALA A 266 141.74 -176.39 REMARK 500 LYS A 292 -168.70 -100.58 REMARK 500 THR A 295 115.44 -39.76 REMARK 500 ASN A 298 110.38 72.70 REMARK 500 ALA A 299 -168.62 -63.08 REMARK 500 LEU A 300 -32.46 -27.70 REMARK 500 ASP A 301 -48.99 -24.39 REMARK 500 ALA A 308 -74.60 -39.77 REMARK 500 THR A 329 45.65 -84.08 REMARK 500 THR A 330 -59.66 -127.33 REMARK 500 SER A 336 -61.19 -95.48 REMARK 500 GLN A 360 79.32 -101.26 REMARK 500 ILE A 367 -73.74 -56.43 REMARK 500 ALA A 385 0.15 -67.86 REMARK 500 LEU A 405 -65.20 -98.07 REMARK 500 ARG A 418 -71.59 -61.69 REMARK 500 GLN A 439 -78.09 -38.98 REMARK 500 PHE A 459 -24.21 175.72 REMARK 500 GLN A 469 -34.15 -39.31 REMARK 500 ILE A 487 -55.22 -132.27 REMARK 500 LYS A 510 -175.25 76.98 REMARK 500 SER A 537 40.22 -103.54 REMARK 500 THR A 538 72.04 12.74 REMARK 500 LEU A 542 -51.47 -27.76 REMARK 500 PHE A 563 -79.76 -110.73 REMARK 500 PRO A 579 -138.59 -54.49 REMARK 500 ALA A 582 86.42 69.34 REMARK 500 ALA A 618 -73.31 122.00 REMARK 500 ARG A 620 140.88 -1.67 REMARK 500 TRP A 634 -57.50 -19.08 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 539 ARG A 540 142.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 525 NE2 REMARK 620 2 ASP A 529 OD2 90.8 REMARK 620 3 ASP A 529 OD1 104.1 51.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I6W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MULTIDRUG EFFLUX TRANSPORTER ACRB DBREF 3D9B A 1 1049 UNP P31224 ACRB_ECOLI 1 1049 SEQRES 1 A 1049 MET PRO ASN PHE PHE ILE ASP ARG PRO ILE PHE ALA TRP SEQRES 2 A 1049 VAL ILE ALA ILE ILE ILE MET LEU ALA GLY GLY LEU ALA SEQRES 3 A 1049 ILE LEU LYS LEU PRO VAL ALA GLN TYR PRO THR ILE ALA SEQRES 4 A 1049 PRO PRO ALA VAL THR ILE SER ALA SER TYR PRO GLY ALA SEQRES 5 A 1049 ASP ALA LYS THR VAL GLN ASP THR VAL THR GLN VAL ILE SEQRES 6 A 1049 GLU GLN ASN MET ASN GLY ILE ASP ASN LEU MET TYR MET SEQRES 7 A 1049 SER SER ASN SER ASP SER THR GLY THR VAL GLN ILE THR SEQRES 8 A 1049 LEU THR PHE GLU SER GLY THR ASP ALA ASP ILE ALA GLN SEQRES 9 A 1049 VAL GLN VAL GLN ASN LYS LEU GLN LEU ALA MET PRO LEU SEQRES 10 A 1049 LEU PRO GLN GLU VAL GLN GLN GLN GLY VAL SER VAL GLU SEQRES 11 A 1049 LYS SER SER SER SER PHE LEU MET VAL VAL GLY VAL ILE SEQRES 12 A 1049 ASN THR ASP GLY THR MET THR GLN GLU ASP ILE SER ASP SEQRES 13 A 1049 TYR VAL ALA ALA ASN MET LYS ASP ALA ILE SER ARG THR SEQRES 14 A 1049 SER GLY VAL GLY ASP VAL GLN LEU PHE GLY SER GLN TYR SEQRES 15 A 1049 ALA MET ARG ILE TRP MET ASN PRO ASN GLU LEU ASN LYS SEQRES 16 A 1049 PHE GLN LEU THR PRO VAL ASP VAL ILE THR ALA ILE LYS SEQRES 17 A 1049 ALA GLN ASN ALA GLN VAL ALA ALA GLY GLN LEU GLY GLY SEQRES 18 A 1049 THR PRO PRO VAL LYS GLY GLN GLN LEU ASN ALA SER ILE SEQRES 19 A 1049 ILE ALA GLN THR ARG LEU THR SER THR GLU GLU PHE GLY SEQRES 20 A 1049 LYS ILE LEU LEU LYS VAL ASN GLN ASP GLY SER ARG VAL SEQRES 21 A 1049 LEU LEU ARG ASP VAL ALA LYS ILE GLU LEU GLY GLY GLU SEQRES 22 A 1049 ASN TYR ASP ILE ILE ALA GLU PHE ASN GLY GLN PRO ALA SEQRES 23 A 1049 SER GLY LEU GLY ILE LYS LEU ALA THR GLY ALA ASN ALA SEQRES 24 A 1049 LEU ASP THR ALA ALA ALA ILE ARG ALA GLU LEU ALA LYS SEQRES 25 A 1049 MET GLU PRO PHE PHE PRO SER GLY LEU LYS ILE VAL TYR SEQRES 26 A 1049 PRO TYR ASP THR THR PRO PHE VAL LYS ILE SER ILE HIS SEQRES 27 A 1049 GLU VAL VAL LYS THR LEU VAL GLU ALA ILE ILE LEU VAL SEQRES 28 A 1049 PHE LEU VAL MET TYR LEU PHE LEU GLN ASN PHE ARG ALA SEQRES 29 A 1049 THR LEU ILE PRO THR ILE ALA VAL PRO VAL VAL LEU LEU SEQRES 30 A 1049 GLY THR PHE ALA VAL LEU ALA ALA PHE GLY PHE SER ILE SEQRES 31 A 1049 ASN THR LEU THR MET PHE GLY MET VAL LEU ALA ILE GLY SEQRES 32 A 1049 LEU LEU VAL ASP ASP ALA ILE VAL VAL VAL GLU ASN VAL SEQRES 33 A 1049 GLU ARG VAL MET ALA GLU GLU GLY LEU PRO PRO LYS GLU SEQRES 34 A 1049 ALA THR ARG LYS SER MET GLY GLN ILE GLN GLY ALA LEU SEQRES 35 A 1049 VAL GLY ILE ALA MET VAL LEU SER ALA VAL PHE VAL PRO SEQRES 36 A 1049 MET ALA PHE PHE GLY GLY SER THR GLY ALA ILE TYR ARG SEQRES 37 A 1049 GLN PHE SER ILE THR ILE VAL SER ALA MET ALA LEU SER SEQRES 38 A 1049 VAL LEU VAL ALA LEU ILE LEU THR PRO ALA LEU CYS ALA SEQRES 39 A 1049 THR MET LEU LYS PRO ILE ALA LYS GLY ASP HIS GLY GLU SEQRES 40 A 1049 GLY LYS LYS GLY PHE PHE GLY TRP PHE ASN ARG MET PHE SEQRES 41 A 1049 GLU LYS SER THR HIS HIS TYR THR ASP SER VAL GLY GLY SEQRES 42 A 1049 ILE LEU ARG SER THR GLY ARG TYR LEU VAL LEU TYR LEU SEQRES 43 A 1049 ILE ILE VAL VAL GLY MET ALA TYR LEU PHE VAL ARG LEU SEQRES 44 A 1049 PRO SER SER PHE LEU PRO ASP GLU ASP GLN GLY VAL PHE SEQRES 45 A 1049 MET THR MET VAL GLN LEU PRO ALA GLY ALA THR GLN GLU SEQRES 46 A 1049 ARG THR GLN LYS VAL LEU ASN GLU VAL THR HIS TYR TYR SEQRES 47 A 1049 LEU THR LYS GLU LYS ASN ASN VAL GLU SER VAL PHE ALA SEQRES 48 A 1049 VAL ASN GLY PHE GLY PHE ALA GLY ARG GLY GLN ASN THR SEQRES 49 A 1049 GLY ILE ALA PHE VAL SER LEU LYS ASP TRP ALA ASP ARG SEQRES 50 A 1049 PRO GLY GLU GLU ASN LYS VAL GLU ALA ILE THR MET ARG SEQRES 51 A 1049 ALA THR ARG ALA PHE SER GLN ILE LYS ASP ALA MET VAL SEQRES 52 A 1049 PHE ALA PHE ASN LEU PRO ALA ILE VAL GLU LEU GLY THR SEQRES 53 A 1049 ALA THR GLY PHE ASP PHE GLU LEU ILE ASP GLN ALA GLY SEQRES 54 A 1049 LEU GLY HIS GLU LYS LEU THR GLN ALA ARG ASN GLN LEU SEQRES 55 A 1049 LEU ALA GLU ALA ALA LYS HIS PRO ASP MET LEU THR SER SEQRES 56 A 1049 VAL ARG PRO ASN GLY LEU GLU ASP THR PRO GLN PHE LYS SEQRES 57 A 1049 ILE ASP ILE ASP GLN GLU LYS ALA GLN ALA LEU GLY VAL SEQRES 58 A 1049 SER ILE ASN ASP ILE ASN THR THR LEU GLY ALA ALA TRP SEQRES 59 A 1049 GLY GLY SER TYR VAL ASN ASP PHE ILE ASP ARG GLY ARG SEQRES 60 A 1049 VAL LYS LYS VAL TYR VAL MET SER GLU ALA LYS TYR ARG SEQRES 61 A 1049 MET LEU PRO ASP ASP ILE GLY ASP TRP TYR VAL ARG ALA SEQRES 62 A 1049 ALA ASP GLY GLN MET VAL PRO PHE SER ALA PHE SER SER SEQRES 63 A 1049 SER ARG TRP GLU TYR GLY SER PRO ARG LEU GLU ARG TYR SEQRES 64 A 1049 ASN GLY LEU PRO SER MET GLU ILE LEU GLY GLN ALA ALA SEQRES 65 A 1049 PRO GLY LYS SER THR GLY GLU ALA MET GLU LEU MET GLU SEQRES 66 A 1049 GLN LEU ALA SER LYS LEU PRO THR GLY VAL GLY TYR ASP SEQRES 67 A 1049 TRP THR GLY MET SER TYR GLN GLU ARG LEU SER GLY ASN SEQRES 68 A 1049 GLN ALA PRO SER LEU TYR ALA ILE SER LEU ILE VAL VAL SEQRES 69 A 1049 PHE LEU CYS LEU ALA ALA LEU TYR GLU SER TRP SER ILE SEQRES 70 A 1049 PRO PHE SER VAL MET LEU VAL VAL PRO LEU GLY VAL ILE SEQRES 71 A 1049 GLY ALA LEU LEU ALA ALA THR PHE ARG GLY LEU THR ASN SEQRES 72 A 1049 ASP VAL TYR PHE GLN VAL GLY LEU LEU THR THR ILE GLY SEQRES 73 A 1049 LEU SER ALA LYS ASN ALA ILE LEU ILE VAL GLU PHE ALA SEQRES 74 A 1049 LYS ASP LEU MET ASP LYS GLU GLY LYS GLY LEU ILE GLU SEQRES 75 A 1049 ALA THR LEU ASP ALA VAL ARG MET ARG LEU ARG PRO ILE SEQRES 76 A 1049 LEU MET THR SER LEU ALA PHE ILE LEU GLY VAL MET PRO SEQRES 77 A 1049 LEU VAL ILE SER THR GLY ALA GLY SER GLY ALA GLN ASN SEQRES 78 A 1049 ALA VAL GLY THR GLY VAL MET GLY GLY MET VAL THR ALA SEQRES 79 A 1049 THR VAL LEU ALA ILE PHE PHE VAL PRO VAL PHE PHE VAL SEQRES 80 A 1049 VAL VAL ARG ARG ARG PHE SER ARG LYS ASN GLU ASP ILE SEQRES 81 A 1049 GLU HIS SER HIS THR VAL ASP HIS HIS HET NI A1201 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI NI 2+ HELIX 1 1 MET A 1 ILE A 6 1 6 HELIX 2 2 ARG A 8 LEU A 30 1 23 HELIX 3 3 ASP A 53 ASP A 59 1 7 HELIX 4 4 VAL A 61 GLN A 67 1 7 HELIX 5 5 ASP A 99 LEU A 113 1 15 HELIX 6 6 ALA A 114 LEU A 118 5 5 HELIX 7 7 PRO A 119 GLY A 126 1 8 HELIX 8 8 THR A 150 MET A 162 1 13 HELIX 9 9 MET A 162 THR A 169 1 8 HELIX 10 10 ASN A 189 PHE A 196 1 8 HELIX 11 11 THR A 199 ASN A 211 1 13 HELIX 12 12 SER A 242 LYS A 248 1 7 HELIX 13 13 LEU A 300 LYS A 312 1 13 HELIX 14 14 THR A 330 LEU A 359 1 30 HELIX 15 15 THR A 365 ALA A 385 1 21 HELIX 16 16 ASN A 391 GLY A 424 1 34 HELIX 17 17 PRO A 426 VAL A 454 1 29 HELIX 18 18 PRO A 455 PHE A 458 5 4 HELIX 19 19 GLY A 460 ILE A 487 1 28 HELIX 20 20 ILE A 487 LEU A 497 1 11 HELIX 21 21 GLY A 511 SER A 537 1 27 HELIX 22 22 GLY A 539 LEU A 559 1 21 HELIX 23 23 THR A 583 LYS A 601 1 19 HELIX 24 24 ASP A 633 ARG A 637 5 5 HELIX 25 25 GLY A 639 ASN A 642 5 4 HELIX 26 26 LYS A 643 SER A 656 1 14 HELIX 27 27 HIS A 692 ALA A 707 1 16 HELIX 28 28 ASP A 732 GLY A 740 1 9 HELIX 29 29 SER A 742 GLY A 756 1 15 HELIX 30 30 ALA A 777 ARG A 780 5 4 HELIX 31 31 LEU A 782 ASP A 788 5 7 HELIX 32 32 PHE A 801 PHE A 804 1 4 HELIX 33 33 SER A 836 ALA A 848 1 13 HELIX 34 34 GLY A 861 GLU A 866 1 6 HELIX 35 35 GLN A 872 GLU A 893 1 22 HELIX 36 36 SER A 896 LEU A 903 1 8 HELIX 37 37 VAL A 904 PHE A 918 1 15 HELIX 38 38 ASP A 924 LYS A 955 1 32 HELIX 39 39 GLY A 959 MET A 987 1 29 HELIX 40 40 GLY A 996 PHE A 1033 1 38 SHEET 1 A 2 VAL A 43 SER A 46 0 SHEET 2 A 2 SER A 128 LYS A 131 -1 O SER A 128 N SER A 46 SHEET 1 B 2 LEU A 75 TYR A 77 0 SHEET 2 B 2 THR A 93 PHE A 94 -1 O THR A 93 N MET A 76 SHEET 1 C 5 THR A 87 GLN A 89 0 SHEET 2 C 5 ASN A 81 ASP A 83 -1 N ASP A 83 O THR A 87 SHEET 3 C 5 ARG A 815 TYR A 819 -1 O LEU A 816 N SER A 82 SHEET 4 C 5 LEU A 822 GLN A 830 -1 O LEU A 822 N TYR A 819 SHEET 5 C 5 THR A 714 PRO A 718 -1 N ARG A 717 O LEU A 828 SHEET 1 D 6 THR A 87 GLN A 89 0 SHEET 2 D 6 ASN A 81 ASP A 83 -1 N ASP A 83 O THR A 87 SHEET 3 D 6 ARG A 815 TYR A 819 -1 O LEU A 816 N SER A 82 SHEET 4 D 6 LEU A 822 GLN A 830 -1 O LEU A 822 N TYR A 819 SHEET 5 D 6 PHE A 680 ASP A 686 -1 N ASP A 686 O PRO A 823 SHEET 6 D 6 VAL A 855 TRP A 859 -1 O ASP A 858 N GLU A 683 SHEET 1 E 4 VAL A 175 PHE A 178 0 SHEET 2 E 4 GLN A 284 ILE A 291 -1 O GLY A 290 N GLN A 176 SHEET 3 E 4 MET A 138 ASN A 144 -1 N VAL A 140 O LEU A 289 SHEET 4 E 4 LEU A 321 ASP A 328 -1 O LYS A 322 N ILE A 143 SHEET 1 F 7 VAL A 175 PHE A 178 0 SHEET 2 F 7 GLN A 284 ILE A 291 -1 O GLY A 290 N GLN A 176 SHEET 3 F 7 ILE A 278 PHE A 281 -1 N PHE A 281 O GLN A 284 SHEET 4 F 7 VAL A 606 ASN A 613 -1 O ASN A 613 N ILE A 278 SHEET 5 F 7 THR A 624 LEU A 631 -1 O SER A 630 N SER A 608 SHEET 6 F 7 VAL A 571 GLN A 577 -1 N VAL A 576 O GLY A 625 SHEET 7 F 7 MET A 662 PHE A 666 -1 O MET A 662 N GLN A 577 SHEET 1 G 4 ALA A 266 GLY A 272 0 SHEET 2 G 4 TYR A 182 MET A 188 -1 N TRP A 187 O LYS A 267 SHEET 3 G 4 VAL A 768 SER A 775 1 O MET A 774 N MET A 188 SHEET 4 G 4 SER A 757 TYR A 758 -1 N SER A 757 O VAL A 773 SHEET 1 H 4 ALA A 266 GLY A 272 0 SHEET 2 H 4 TYR A 182 MET A 188 -1 N TRP A 187 O LYS A 267 SHEET 3 H 4 VAL A 768 SER A 775 1 O MET A 774 N MET A 188 SHEET 4 H 4 PHE A 762 ILE A 763 -1 N PHE A 762 O LYS A 769 SHEET 1 I 2 GLN A 218 LEU A 219 0 SHEET 2 I 2 ALA A 232 SER A 233 -1 O ALA A 232 N LEU A 219 SHEET 1 J 2 LEU A 250 VAL A 253 0 SHEET 2 J 2 ARG A 259 LEU A 261 -1 O VAL A 260 N LEU A 251 SHEET 1 K 2 GLN A 726 ILE A 731 0 SHEET 2 K 2 SER A 805 GLU A 810 -1 O GLU A 810 N GLN A 726 SHEET 1 L 2 TYR A 790 ARG A 792 0 SHEET 2 L 2 MET A 798 PRO A 800 -1 O VAL A 799 N VAL A 791 LINK NE2 HIS A 525 NI NI A1201 1555 1555 2.37 LINK OD2 ASP A 529 NI NI A1201 1555 1555 2.24 LINK OD1 ASP A 529 NI NI A1201 1555 1555 2.72 CISPEP 1 THR A 222 PRO A 223 0 -12.66 CISPEP 2 ALA A 297 ASN A 298 0 27.35 CISPEP 3 PHE A 458 PHE A 459 0 4.13 CISPEP 4 ALA A 580 GLY A 581 0 -2.83 SITE 1 AC1 2 HIS A 525 ASP A 529 CRYST1 145.740 145.740 514.000 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006862 0.003962 0.000000 0.00000 SCALE2 0.000000 0.007923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001946 0.00000