HEADER TRANSCRIPTION/PEPTIDE 27-MAY-08 3D9L TITLE SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT TITLE 2 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA-POLYMERASE TITLE 3 II COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 16; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CTD INTERACTING DOMAIN OF SCAF8,UNP RESIDUES 1-136; COMPND 5 SYNONYM: RNA-BINDING MOTIF PROTEIN 16; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CTD-PEPTIDE; COMPND 9 CHAIN: Y, Z; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM16, KIAA1116; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: PEPTIDE DERIVED FROM THE CONSERVED REPEAT SEQUENCE IN SOURCE 14 RNA POLYMERASE II CTD KEYWDS SCAF8, RNA POLYMERASE II CTD INTERACTING DOMAIN, ARM REPEATS, KEYWDS 2 PHOSPHO-CTD, PHOSPHOPROTEIN, RNA-BINDING, TRANSCRIPTION-PEPTIDE KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.BECKER,B.LOLL,A.MEINHART REVDAT 7 30-AUG-23 3D9L 1 REMARK SEQADV LINK REVDAT 6 25-OCT-17 3D9L 1 REMARK REVDAT 5 13-JUL-11 3D9L 1 VERSN REVDAT 4 24-FEB-09 3D9L 1 VERSN REVDAT 3 19-AUG-08 3D9L 1 JRNL REVDAT 2 29-JUL-08 3D9L 1 JRNL REVDAT 1 10-JUN-08 3D9L 0 JRNL AUTH R.BECKER,B.LOLL,A.MEINHART JRNL TITL SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO JRNL TITL 2 DIFFERENT PHOSPHORYLATED FORMS OF THE CARBOXYL-TERMINAL JRNL TITL 3 DOMAIN OF RNA POLYMERASE II. JRNL REF J.BIOL.CHEM. V. 283 22659 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18550522 JRNL DOI 10.1074/JBC.M803540200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1192 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 42.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.92000 REMARK 3 B22 (A**2) : 1.92000 REMARK 3 B33 (A**2) : -3.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.276 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.963 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2530 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3420 ; 1.227 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 5.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;37.770 ;24.779 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;14.501 ;15.095 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;24.717 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 378 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1847 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1242 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1773 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.011 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1549 ; 0.589 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2476 ; 0.954 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1102 ; 1.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 943 ; 2.474 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 43.5600 4.9389 17.1121 REMARK 3 T TENSOR REMARK 3 T11: -0.2058 T22: -0.1532 REMARK 3 T33: -0.1879 T12: -0.0012 REMARK 3 T13: -0.0133 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.2418 L22: 4.0239 REMARK 3 L33: 7.1599 L12: 0.4574 REMARK 3 L13: 1.6621 L23: 0.5197 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: -0.1631 S13: 0.2266 REMARK 3 S21: -0.0964 S22: -0.2662 S23: 0.0847 REMARK 3 S31: 0.1418 S32: 0.1626 S33: 0.2280 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7039 14.4660 -9.6025 REMARK 3 T TENSOR REMARK 3 T11: -0.2044 T22: -0.1641 REMARK 3 T33: -0.0891 T12: -0.0409 REMARK 3 T13: -0.0357 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 2.6096 L22: 3.3246 REMARK 3 L33: 6.8626 L12: 0.0157 REMARK 3 L13: 1.1572 L23: 0.8321 REMARK 3 S TENSOR REMARK 3 S11: -0.1947 S12: 0.1156 S13: -0.0542 REMARK 3 S21: 0.0393 S22: 0.1945 S23: -0.1415 REMARK 3 S31: -0.0556 S32: -0.2679 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Y 1 Y 10 REMARK 3 ORIGIN FOR THE GROUP (A): 33.8437 -2.7897 10.8555 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: 0.1849 REMARK 3 T33: 0.0165 T12: -0.1132 REMARK 3 T13: -0.0599 T23: -0.0859 REMARK 3 L TENSOR REMARK 3 L11: 7.7876 L22: 6.7047 REMARK 3 L33: 7.5120 L12: -0.6087 REMARK 3 L13: -7.1513 L23: 1.8848 REMARK 3 S TENSOR REMARK 3 S11: -0.3186 S12: 0.7486 S13: -0.6433 REMARK 3 S21: -0.6377 S22: -0.5025 S23: 1.1584 REMARK 3 S31: 0.2274 S32: -0.8430 S33: 0.8211 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Z -1 Z 6 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3539 7.4261 -7.1808 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.2509 REMARK 3 T33: 0.1190 T12: -0.1997 REMARK 3 T13: 0.0023 T23: -0.1472 REMARK 3 L TENSOR REMARK 3 L11: 11.7597 L22: 55.3562 REMARK 3 L33: 32.6383 L12: 0.8673 REMARK 3 L13: 8.3324 L23: -37.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.3206 S12: -0.8524 S13: -0.2452 REMARK 3 S21: 1.7433 S22: 0.2002 S23: 1.4476 REMARK 3 S31: 0.5511 S32: -2.0353 S33: -0.5208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3D9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000047764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16293 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: PDB ENTRY 3D9J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM THIOCYANATE, 30% (W/V) REMARK 280 PEG2000MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.36950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.05425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.68475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Z REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 142 REMARK 465 HIS A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS B 140 REMARK 465 HIS B 141 REMARK 465 HIS B 142 REMARK 465 HIS B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 THR Y 11 REMARK 465 SER Y 12 REMARK 465 PRO Y 13 REMARK 465 SER Y 14 REMARK 465 BTN Z -7 REMARK 465 TYR Z -6 REMARK 465 SEP Z -5 REMARK 465 PRO Z -4 REMARK 465 THR Z -3 REMARK 465 SER Z -2 REMARK 465 SER Z 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ACT A 501 O HOH A 502 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN Y OF CTD-PEPTIDE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN Z OF CTD-PEPTIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SZ9 RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 1SZA RELATED DB: PDB REMARK 900 THE RNA POLYMERASE II CTD IN MRNA PROCESSING: BETA-TURN RECOGNITION REMARK 900 AND BETA-SPIRAL MODEL REMARK 900 RELATED ID: 2BF0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE RPR OF PCF11 REMARK 900 RELATED ID: 3CLJ RELATED DB: PDB REMARK 900 STRUCTURE OF THE RNA POLYMERASE II CTD-INTERACTING DOMAIN OF NRD1 REMARK 900 RELATED ID: 6404 RELATED DB: BMRB REMARK 900 BACKBONE ASSIGNMENT OF PCF11 CTD BINDING DOMAIN REMARK 900 RELATED ID: 3D9I RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9J RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II REMARK 900 RELATED ID: 3D9K RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) REMARK 900 RELATED ID: 3D9M RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER5) REMARK 900 RELATED ID: 3D9N RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER7) REMARK 900 RELATED ID: 3D9O RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD UNPHOSPHORYLATED) REMARK 900 RELATED ID: 3D9P RELATED DB: PDB REMARK 900 SNAPSHOTS OF THE RNA PROCESSING FACTOR SCAF8 BOUND TO DIFFERENT REMARK 900 PHOSPHORYLATED FORMS OF THE CARBOXY-TERMINAL DOMAIN OF RNA- REMARK 900 POLYMERASE II (CTD PHOSPHORYLATED AT SER2 AND SER5) DBREF 3D9L A 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9L B 1 136 UNP Q9UPN6 RBM16_HUMAN 1 136 DBREF 3D9L Y 0 14 PDB 3D9K 3D9L 0 14 DBREF 3D9L Z -7 7 PDB 3D9K 3D9L 0 14 SEQADV 3D9L ALA A 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L LEU A 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L GLU A 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS A 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS A 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS A 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS A 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS A 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS A 145 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L ALA B 137 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L LEU B 138 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L GLU B 139 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS B 140 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS B 141 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS B 142 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS B 143 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS B 144 UNP Q9UPN6 EXPRESSION TAG SEQADV 3D9L HIS B 145 UNP Q9UPN6 EXPRESSION TAG SEQRES 1 A 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 A 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 A 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 A 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 A 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 A 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 A 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 A 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 A 145 ASP ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU TRP SEQRES 10 A 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 A 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 A 145 HIS HIS SEQRES 1 B 145 MET GLU ALA VAL LYS THR PHE ASN SER GLU LEU TYR SER SEQRES 2 B 145 LEU ASN ASP TYR LYS PRO PRO ILE SER LYS ALA LYS MET SEQRES 3 B 145 THR GLN ILE THR LYS ALA ALA ILE LYS ALA ILE LYS PHE SEQRES 4 B 145 TYR LYS HIS VAL VAL GLN SER VAL GLU LYS PHE ILE GLN SEQRES 5 B 145 LYS CYS LYS PRO GLU TYR LYS VAL PRO GLY LEU TYR VAL SEQRES 6 B 145 ILE ASP SER ILE VAL ARG GLN SER ARG HIS GLN PHE GLY SEQRES 7 B 145 GLN GLU LYS ASP VAL PHE ALA PRO ARG PHE SER ASN ASN SEQRES 8 B 145 ILE ILE SER THR PHE GLN ASN LEU TYR ARG CYS PRO GLY SEQRES 9 B 145 ASP ASP LYS SER LYS ILE VAL ARG VAL LEU ASN LEU TRP SEQRES 10 B 145 GLN LYS ASN ASN VAL PHE LYS SER GLU ILE ILE GLN PRO SEQRES 11 B 145 LEU LEU ASP MET ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 12 B 145 HIS HIS SEQRES 1 Y 15 BTN TYR SEP PRO THR SER PRO SER TYR SEP PRO THR SER SEQRES 2 Y 15 PRO SER SEQRES 1 Z 15 BTN TYR SEP PRO THR SER PRO SER TYR SEP PRO THR SER SEQRES 2 Z 15 PRO SER MODRES 3D9L SEP Y 2 SER PHOSPHOSERINE MODRES 3D9L SEP Y 9 SER PHOSPHOSERINE MODRES 3D9L SEP Z 2 SER PHOSPHOSERINE HET BTN Y 0 15 HET SEP Y 2 10 HET SEP Y 9 10 HET SEP Z 2 10 HET ACT A 501 4 HET GOL B 503 6 HETNAM BTN BIOTIN HETNAM SEP PHOSPHOSERINE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BTN C10 H16 N2 O3 S FORMUL 3 SEP 3(C3 H8 N O6 P) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *57(H2 O) HELIX 1 1 GLU A 2 SER A 13 1 12 HELIX 2 2 LEU A 14 TYR A 17 5 4 HELIX 3 3 SER A 22 ALA A 36 1 15 HELIX 4 4 PHE A 39 CYS A 54 1 16 HELIX 5 5 LYS A 55 GLU A 57 5 3 HELIX 6 6 TYR A 58 GLY A 78 1 21 HELIX 7 7 VAL A 83 ASN A 90 1 8 HELIX 8 8 ASN A 91 TYR A 100 1 10 HELIX 9 9 PRO A 103 ASP A 105 5 3 HELIX 10 10 ASP A 106 ASN A 120 1 15 HELIX 11 11 LYS A 124 HIS A 141 1 18 HELIX 12 12 MET B 1 SER B 13 1 13 HELIX 13 13 LEU B 14 TYR B 17 5 4 HELIX 14 14 SER B 22 ALA B 36 1 15 HELIX 15 15 PHE B 39 CYS B 54 1 16 HELIX 16 16 LYS B 55 GLU B 57 5 3 HELIX 17 17 TYR B 58 GLY B 78 1 21 HELIX 18 18 VAL B 83 ASN B 90 1 8 HELIX 19 19 ASN B 91 TYR B 100 1 10 HELIX 20 20 ARG B 101 CYS B 102 5 2 HELIX 21 21 PRO B 103 ASP B 105 5 3 HELIX 22 22 ASP B 106 ASN B 120 1 15 HELIX 23 23 LYS B 124 GLU B 139 1 16 LINK C11 BTN Y 0 N TYR Y 1 1555 1555 1.26 LINK C TYR Y 1 N SEP Y 2 1555 1555 1.33 LINK C SEP Y 2 N PRO Y 3 1555 1555 1.35 LINK C TYR Y 8 N SEP Y 9 1555 1555 1.33 LINK C SEP Y 9 N PRO Y 10 1555 1555 1.36 LINK C TYR Z 1 N SEP Z 2 1555 1555 1.33 LINK C SEP Z 2 N PRO Z 3 1555 1555 1.35 CISPEP 1 PRO A 19 PRO A 20 0 6.57 CISPEP 2 PRO B 19 PRO B 20 0 2.36 SITE 1 AC1 6 PRO A 20 ILE A 21 PRO A 61 TYR A 64 SITE 2 AC1 6 HOH A 502 TYR Y 1 SITE 1 AC2 5 TYR B 40 VAL B 83 PRO B 86 ARG B 87 SITE 2 AC2 5 ASN B 90 SITE 1 AC3 24 PRO A 20 ILE A 21 LYS A 23 MET A 26 SITE 2 AC3 24 LYS A 31 TYR A 64 ASP A 67 SER A 68 SITE 3 AC3 24 ARG A 71 GLN A 72 HIS A 75 GLN A 76 SITE 4 AC3 24 GLN A 97 TYR A 100 ARG A 101 ARG A 112 SITE 5 AC3 24 LEU A 138 ACT A 501 HOH A 517 SER B 9 SITE 6 AC3 24 GLU B 10 SER B 13 HOH Y 65 HOH Y 109 SITE 1 AC4 11 PRO B 20 ILE B 21 SER B 22 LYS B 23 SITE 2 AC4 11 MET B 26 TYR B 64 ASP B 67 SER B 68 SITE 3 AC4 11 ARG B 71 ARG B 112 HOH B 527 CRYST1 56.296 56.296 106.739 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009369 0.00000