data_3DA5 # _entry.id 3DA5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DA5 pdb_00003da5 10.2210/pdb3da5/pdb RCSB RCSB047784 ? ? WWPDB D_1000047784 ? ? # _pdbx_database_status.entry_id 3DA5 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-05-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hughes, R.C.' 1 'Ng, J.D.' 2 # _citation.id primary _citation.title 'Crystal Structure of Piwi/Argonaute/Zwille(PAZ) domain from Thermococcus thioreducens' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hughes, R.C.' 1 ? primary 'Ng, J.D.' 2 ? # _cell.length_a 57.392 _cell.length_b 60.896 _cell.length_c 66.447 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3DA5 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3DA5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 19 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Argonaute 15435.667 2 ? ? ? ? 2 water nat water 18.015 21 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSHQIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIEDNSNDVEHWYDYHLERYWN TPELKKEFYKKFGPVDLNQPIILAKPLRQHNRGDLVHLLPQFVVPVYN ; _entity_poly.pdbx_seq_one_letter_code_can ;MSHQIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIEDNSNDVEHWYDYHLERYWN TPELKKEFYKKFGPVDLNQPIILAKPLRQHNRGDLVHLLPQFVVPVYN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 HIS n 1 4 GLN n 1 5 ILE n 1 6 ARG n 1 7 SER n 1 8 LYS n 1 9 LYS n 1 10 THR n 1 11 LEU n 1 12 TRP n 1 13 GLU n 1 14 LEU n 1 15 VAL n 1 16 GLY n 1 17 ARG n 1 18 ASN n 1 19 LYS n 1 20 ASP n 1 21 ALA n 1 22 LEU n 1 23 ARG n 1 24 ASP n 1 25 PHE n 1 26 LEU n 1 27 LYS n 1 28 GLU n 1 29 HIS n 1 30 ARG n 1 31 GLY n 1 32 THR n 1 33 ILE n 1 34 LEU n 1 35 LEU n 1 36 ARG n 1 37 ASP n 1 38 ILE n 1 39 ALA n 1 40 SER n 1 41 GLU n 1 42 HIS n 1 43 LYS n 1 44 VAL n 1 45 VAL n 1 46 TYR n 1 47 LYS n 1 48 PRO n 1 49 ILE n 1 50 PHE n 1 51 LYS n 1 52 ARG n 1 53 TYR n 1 54 ASN n 1 55 GLY n 1 56 ASP n 1 57 PRO n 1 58 ASP n 1 59 LEU n 1 60 ILE n 1 61 GLU n 1 62 ASP n 1 63 ASN n 1 64 SER n 1 65 ASN n 1 66 ASP n 1 67 VAL n 1 68 GLU n 1 69 HIS n 1 70 TRP n 1 71 TYR n 1 72 ASP n 1 73 TYR n 1 74 HIS n 1 75 LEU n 1 76 GLU n 1 77 ARG n 1 78 TYR n 1 79 TRP n 1 80 ASN n 1 81 THR n 1 82 PRO n 1 83 GLU n 1 84 LEU n 1 85 LYS n 1 86 LYS n 1 87 GLU n 1 88 PHE n 1 89 TYR n 1 90 LYS n 1 91 LYS n 1 92 PHE n 1 93 GLY n 1 94 PRO n 1 95 VAL n 1 96 ASP n 1 97 LEU n 1 98 ASN n 1 99 GLN n 1 100 PRO n 1 101 ILE n 1 102 ILE n 1 103 LEU n 1 104 ALA n 1 105 LYS n 1 106 PRO n 1 107 LEU n 1 108 ARG n 1 109 GLN n 1 110 HIS n 1 111 ASN n 1 112 ARG n 1 113 GLY n 1 114 ASP n 1 115 LEU n 1 116 VAL n 1 117 HIS n 1 118 LEU n 1 119 LEU n 1 120 PRO n 1 121 GLN n 1 122 PHE n 1 123 VAL n 1 124 VAL n 1 125 PRO n 1 126 VAL n 1 127 TYR n 1 128 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Ago-PAZ _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain OGL-20 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermococcus thioreducens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3DA5 _struct_ref.pdbx_db_accession 3DA5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSHQIRSKKTLWELVGRNKDALRDFLKEHRGTILLRDIASEHKVVYKPIFKRYNGDPDLIEDNSNDVEHWYDYHLERYWN TPELKKEFYKKFGPVDLNQPIILAKPLRQHNRGDLVHLLPQFVVPVYN ; _struct_ref.pdbx_align_begin 8 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DA5 A 8 ? 128 ? 3DA5 8 ? 128 ? 8 128 2 1 3DA5 B 8 ? 128 ? 3DA5 8 ? 128 ? 8 128 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3DA5 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details 'Dioxane, PEG8000, pH 8.5, vapor diffusion, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 3DA5 _reflns.observed_criterion_sigma_F 1.7 _reflns.observed_criterion_sigma_I 3 _reflns.d_resolution_high 1.94 _reflns.d_resolution_low 44.9 _reflns.number_all ? _reflns.number_obs 14536 _reflns.percent_possible_obs 81.1 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_netI_over_sigmaI 30.7 _reflns.B_iso_Wilson_estimate 32.7 _reflns.pdbx_redundancy 4.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.94 _reflns_shell.d_res_low 2.01 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 59.4 _reflns_shell.Rmerge_I_obs 0.32 _reflns_shell.meanI_over_sigI_obs 3.23 _reflns_shell.pdbx_Rsym_value 0.32 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.number_unique_all 1048 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DA5 _refine.ls_d_res_high 1.940 _refine.ls_d_res_low 44.900 _refine.pdbx_ls_sigma_F 0 _refine.ls_percent_reflns_obs 81.130 _refine.ls_number_reflns_obs 14511 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.267 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 730 _refine.B_iso_mean 34.363 _refine.aniso_B[1][1] 0.320 _refine.aniso_B[2][2] 0.700 _refine.aniso_B[3][3] -1.030 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.951 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.pdbx_overall_ESU_R 0.274 _refine.pdbx_overall_ESU_R_Free 0.217 _refine.overall_SU_ML 0.158 _refine.overall_SU_B 5.393 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all 17886 _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB ENTRY 1U04' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2016 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 2037 _refine_hist.d_res_high 1.940 _refine_hist.d_res_low 44.900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2073 0.021 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1420 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2817 1.772 1.950 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3447 0.991 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 240 8.183 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 108 34.248 23.981 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 344 15.900 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 22.260 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 295 0.115 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2286 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 430 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 382 0.238 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1396 0.199 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1000 0.188 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1045 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 47 0.122 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other 1 0.009 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 26 0.240 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 57 0.250 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.273 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1261 1.459 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 476 0.318 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1964 2.276 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 965 2.944 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 853 4.419 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.940 _refine_ls_shell.d_res_low 1.988 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 57.280 _refine_ls_shell.number_reflns_R_work 704 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.262 _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 751 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DA5 _struct.title 'Crystal Structure of Piwi/Argonaute/Zwille(PAZ) domain from Thermococcus thioreducens' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DA5 _struct_keywords.text 'PAZ domain, RNA binding, SH3-like barrel, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 10 ? VAL A 15 ? THR A 10 VAL A 15 1 ? 6 HELX_P HELX_P2 2 ASN A 18 ? HIS A 29 ? ASN A 18 HIS A 29 1 ? 12 HELX_P HELX_P3 3 ASN A 63 ? TRP A 79 ? ASN A 63 TRP A 79 1 ? 17 HELX_P HELX_P4 4 THR A 81 ? GLY A 93 ? THR A 81 GLY A 93 1 ? 13 HELX_P HELX_P5 5 LEU A 119 ? GLN A 121 ? LEU A 119 GLN A 121 5 ? 3 HELX_P HELX_P6 6 THR B 10 ? VAL B 15 ? THR B 10 VAL B 15 1 ? 6 HELX_P HELX_P7 7 ASN B 18 ? HIS B 29 ? ASN B 18 HIS B 29 1 ? 12 HELX_P HELX_P8 8 ASN B 63 ? TRP B 79 ? ASN B 63 TRP B 79 1 ? 17 HELX_P HELX_P9 9 THR B 81 ? GLY B 93 ? THR B 81 GLY B 93 1 ? 13 HELX_P HELX_P10 10 LEU B 119 ? GLN B 121 ? LEU B 119 GLN B 121 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 126 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 126 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 TYR _struct_mon_prot_cis.pdbx_label_seq_id_2 127 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 TYR _struct_mon_prot_cis.pdbx_auth_seq_id_2 127 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -22.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 3 ? D ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 59 ? ILE A 60 ? LEU A 59 ILE A 60 A 2 ILE A 101 ? PRO A 106 ? ILE A 101 PRO A 106 A 3 VAL A 116 ? LEU A 118 ? VAL A 116 LEU A 118 B 1 LEU A 59 ? ILE A 60 ? LEU A 59 ILE A 60 B 2 ILE A 101 ? PRO A 106 ? ILE A 101 PRO A 106 B 3 VAL A 45 ? PRO A 48 ? VAL A 45 PRO A 48 B 4 ILE A 33 ? ASP A 37 ? ILE A 33 ASP A 37 B 5 VAL A 123 ? TYR A 127 ? VAL A 123 TYR A 127 C 1 LEU B 59 ? ILE B 60 ? LEU B 59 ILE B 60 C 2 ILE B 101 ? PRO B 106 ? ILE B 101 PRO B 106 C 3 VAL B 116 ? LEU B 118 ? VAL B 116 LEU B 118 D 1 LEU B 59 ? ILE B 60 ? LEU B 59 ILE B 60 D 2 ILE B 101 ? PRO B 106 ? ILE B 101 PRO B 106 D 3 VAL B 45 ? PRO B 48 ? VAL B 45 PRO B 48 D 4 LEU B 34 ? ASP B 37 ? LEU B 34 ASP B 37 D 5 VAL B 123 ? VAL B 126 ? VAL B 123 VAL B 126 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 60 ? N ILE A 60 O ILE A 101 ? O ILE A 101 A 2 3 N ILE A 102 ? N ILE A 102 O LEU A 118 ? O LEU A 118 B 1 2 N ILE A 60 ? N ILE A 60 O ILE A 101 ? O ILE A 101 B 2 3 O LYS A 105 ? O LYS A 105 N LYS A 47 ? N LYS A 47 B 3 4 O TYR A 46 ? O TYR A 46 N LEU A 35 ? N LEU A 35 B 4 5 N ARG A 36 ? N ARG A 36 O VAL A 124 ? O VAL A 124 C 1 2 N ILE B 60 ? N ILE B 60 O ILE B 101 ? O ILE B 101 C 2 3 N ALA B 104 ? N ALA B 104 O VAL B 116 ? O VAL B 116 D 1 2 N ILE B 60 ? N ILE B 60 O ILE B 101 ? O ILE B 101 D 2 3 O LYS B 105 ? O LYS B 105 N LYS B 47 ? N LYS B 47 D 3 4 O TYR B 46 ? O TYR B 46 N LEU B 35 ? N LEU B 35 D 4 5 N LEU B 34 ? N LEU B 34 O VAL B 126 ? O VAL B 126 # _atom_sites.entry_id 3DA5 _atom_sites.fract_transf_matrix[1][1] 0.017424 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016421 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015050 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 GLN 4 4 ? ? ? A . n A 1 5 ILE 5 5 ? ? ? A . n A 1 6 ARG 6 6 ? ? ? A . n A 1 7 SER 7 7 ? ? ? A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 PHE 50 50 50 PHE PHE A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 TRP 70 70 70 TRP TRP A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 HIS 74 74 74 HIS HIS A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 TRP 79 79 79 TRP TRP A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 GLY 93 93 93 GLY GLY A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 HIS 117 117 117 HIS HIS A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 VAL 124 124 124 VAL VAL A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 TYR 127 127 127 TYR TYR A . n A 1 128 ASN 128 128 128 ASN ASN A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 SER 2 2 ? ? ? B . n B 1 3 HIS 3 3 ? ? ? B . n B 1 4 GLN 4 4 ? ? ? B . n B 1 5 ILE 5 5 ? ? ? B . n B 1 6 ARG 6 6 ? ? ? B . n B 1 7 SER 7 7 ? ? ? B . n B 1 8 LYS 8 8 8 LYS LYS B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 THR 10 10 10 THR THR B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 TRP 12 12 12 TRP TRP B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 VAL 15 15 15 VAL VAL B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 ASN 18 18 18 ASN ASN B . n B 1 19 LYS 19 19 19 LYS LYS B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 ARG 23 23 23 ARG ARG B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 PHE 25 25 25 PHE PHE B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 GLU 28 28 28 GLU GLU B . n B 1 29 HIS 29 29 29 HIS HIS B . n B 1 30 ARG 30 30 30 ARG ARG B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 ARG 36 36 36 ARG ARG B . n B 1 37 ASP 37 37 37 ASP ASP B . n B 1 38 ILE 38 38 38 ILE ILE B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 SER 40 40 40 SER SER B . n B 1 41 GLU 41 41 41 GLU GLU B . n B 1 42 HIS 42 42 42 HIS HIS B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 VAL 44 44 44 VAL VAL B . n B 1 45 VAL 45 45 45 VAL VAL B . n B 1 46 TYR 46 46 46 TYR TYR B . n B 1 47 LYS 47 47 47 LYS LYS B . n B 1 48 PRO 48 48 48 PRO PRO B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 PHE 50 50 50 PHE PHE B . n B 1 51 LYS 51 51 51 LYS LYS B . n B 1 52 ARG 52 52 52 ARG ARG B . n B 1 53 TYR 53 53 53 TYR TYR B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 ASP 56 56 56 ASP ASP B . n B 1 57 PRO 57 57 57 PRO PRO B . n B 1 58 ASP 58 58 58 ASP ASP B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 ASP 62 62 62 ASP ASP B . n B 1 63 ASN 63 63 63 ASN ASN B . n B 1 64 SER 64 64 64 SER SER B . n B 1 65 ASN 65 65 65 ASN ASN B . n B 1 66 ASP 66 66 66 ASP ASP B . n B 1 67 VAL 67 67 67 VAL VAL B . n B 1 68 GLU 68 68 68 GLU GLU B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 TRP 70 70 70 TRP TRP B . n B 1 71 TYR 71 71 71 TYR TYR B . n B 1 72 ASP 72 72 72 ASP ASP B . n B 1 73 TYR 73 73 73 TYR TYR B . n B 1 74 HIS 74 74 74 HIS HIS B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 ARG 77 77 77 ARG ARG B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 TRP 79 79 79 TRP TRP B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 THR 81 81 81 THR THR B . n B 1 82 PRO 82 82 82 PRO PRO B . n B 1 83 GLU 83 83 83 GLU GLU B . n B 1 84 LEU 84 84 84 LEU LEU B . n B 1 85 LYS 85 85 85 LYS LYS B . n B 1 86 LYS 86 86 86 LYS LYS B . n B 1 87 GLU 87 87 87 GLU GLU B . n B 1 88 PHE 88 88 88 PHE PHE B . n B 1 89 TYR 89 89 89 TYR TYR B . n B 1 90 LYS 90 90 90 LYS LYS B . n B 1 91 LYS 91 91 91 LYS LYS B . n B 1 92 PHE 92 92 92 PHE PHE B . n B 1 93 GLY 93 93 93 GLY GLY B . n B 1 94 PRO 94 94 94 PRO PRO B . n B 1 95 VAL 95 95 95 VAL VAL B . n B 1 96 ASP 96 96 96 ASP ASP B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 GLN 99 99 99 GLN GLN B . n B 1 100 PRO 100 100 100 PRO PRO B . n B 1 101 ILE 101 101 101 ILE ILE B . n B 1 102 ILE 102 102 102 ILE ILE B . n B 1 103 LEU 103 103 103 LEU LEU B . n B 1 104 ALA 104 104 104 ALA ALA B . n B 1 105 LYS 105 105 105 LYS LYS B . n B 1 106 PRO 106 106 106 PRO PRO B . n B 1 107 LEU 107 107 107 LEU LEU B . n B 1 108 ARG 108 108 108 ARG ARG B . n B 1 109 GLN 109 109 109 GLN GLN B . n B 1 110 HIS 110 110 110 HIS HIS B . n B 1 111 ASN 111 111 111 ASN ASN B . n B 1 112 ARG 112 112 112 ARG ARG B . n B 1 113 GLY 113 113 113 GLY GLY B . n B 1 114 ASP 114 114 114 ASP ASP B . n B 1 115 LEU 115 115 115 LEU LEU B . n B 1 116 VAL 116 116 116 VAL VAL B . n B 1 117 HIS 117 117 117 HIS HIS B . n B 1 118 LEU 118 118 118 LEU LEU B . n B 1 119 LEU 119 119 119 LEU LEU B . n B 1 120 PRO 120 120 120 PRO PRO B . n B 1 121 GLN 121 121 121 GLN GLN B . n B 1 122 PHE 122 122 122 PHE PHE B . n B 1 123 VAL 123 123 123 VAL VAL B . n B 1 124 VAL 124 124 124 VAL VAL B . n B 1 125 PRO 125 125 125 PRO PRO B . n B 1 126 VAL 126 126 126 VAL VAL B . n B 1 127 TYR 127 127 127 TYR TYR B . n B 1 128 ASN 128 128 128 ASN ASN B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 129 1 HOH HOH A . C 2 HOH 2 130 4 HOH HOH A . C 2 HOH 3 131 7 HOH HOH A . C 2 HOH 4 132 8 HOH HOH A . C 2 HOH 5 133 11 HOH HOH A . C 2 HOH 6 134 13 HOH HOH A . C 2 HOH 7 135 14 HOH HOH A . C 2 HOH 8 136 16 HOH HOH A . C 2 HOH 9 137 17 HOH HOH A . C 2 HOH 10 138 19 HOH HOH A . C 2 HOH 11 139 21 HOH HOH A . D 2 HOH 1 129 2 HOH HOH B . D 2 HOH 2 130 3 HOH HOH B . D 2 HOH 3 131 5 HOH HOH B . D 2 HOH 4 132 6 HOH HOH B . D 2 HOH 5 133 9 HOH HOH B . D 2 HOH 6 134 10 HOH HOH B . D 2 HOH 7 135 12 HOH HOH B . D 2 HOH 8 136 15 HOH HOH B . D 2 HOH 9 137 18 HOH HOH B . D 2 HOH 10 138 20 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_phasing_MR.entry_id 3DA5 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.220 _pdbx_phasing_MR.d_res_low_rotation 44.900 _pdbx_phasing_MR.d_res_high_translation 2.220 _pdbx_phasing_MR.d_res_low_translation 44.900 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MOLREP . ? other 'A. Vagin' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 1 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 2 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 DENZO . ? ? ? ? 'data reduction' ? ? ? 5 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 51 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASN _pdbx_validate_close_contact.auth_seq_id_2 54 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.85 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A LYS 47 ? ? N A PRO 48 ? ? CA A PRO 48 ? ? 129.84 119.30 10.54 1.50 Y 2 1 CB A ASN 54 ? ? CA A ASN 54 ? ? C A ASN 54 ? ? 91.58 110.40 -18.82 2.00 N 3 1 N A ASN 54 ? ? CA A ASN 54 ? ? C A ASN 54 ? ? 130.31 111.00 19.31 2.70 N 4 1 NE B ARG 23 ? ? CZ B ARG 23 ? ? NH1 B ARG 23 ? ? 125.27 120.30 4.97 0.50 N 5 1 NE B ARG 23 ? ? CZ B ARG 23 ? ? NH2 B ARG 23 ? ? 117.17 120.30 -3.13 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG B 30 ? ? -39.79 -38.71 2 1 LYS B 43 ? ? -66.80 59.32 3 1 ARG B 52 ? ? -28.29 82.38 4 1 TYR B 53 ? ? 172.34 -74.19 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 TYR A 53 ? ? ASN A 54 ? ? -135.27 2 1 LYS B 51 ? ? ARG B 52 ? ? 144.49 3 1 TYR B 127 ? ? ASN B 128 ? ? -146.23 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 41 ? CG ? A GLU 41 CG 2 1 Y 1 A GLU 41 ? CD ? A GLU 41 CD 3 1 Y 1 A GLU 41 ? OE1 ? A GLU 41 OE1 4 1 Y 1 A GLU 41 ? OE2 ? A GLU 41 OE2 5 1 Y 1 A ARG 52 ? CB ? A ARG 52 CB 6 1 Y 1 A ARG 52 ? CG ? A ARG 52 CG 7 1 Y 1 A ARG 52 ? CD ? A ARG 52 CD 8 1 Y 1 A ARG 52 ? NE ? A ARG 52 NE 9 1 Y 1 A ARG 52 ? CZ ? A ARG 52 CZ 10 1 Y 1 A ARG 52 ? NH1 ? A ARG 52 NH1 11 1 Y 1 A ARG 52 ? NH2 ? A ARG 52 NH2 12 1 Y 1 A ARG 77 ? CG ? A ARG 77 CG 13 1 Y 1 A ARG 77 ? CD ? A ARG 77 CD 14 1 Y 1 A ARG 77 ? NE ? A ARG 77 NE 15 1 Y 1 A ARG 77 ? CZ ? A ARG 77 CZ 16 1 Y 1 A ARG 77 ? NH1 ? A ARG 77 NH1 17 1 Y 1 A ARG 77 ? NH2 ? A ARG 77 NH2 18 1 Y 1 A LYS 86 ? NZ ? A LYS 86 NZ 19 1 Y 1 A LYS 91 ? CE ? A LYS 91 CE 20 1 Y 1 A LYS 91 ? NZ ? A LYS 91 NZ 21 1 Y 1 B LYS 8 ? CG ? B LYS 8 CG 22 1 Y 1 B LYS 8 ? CD ? B LYS 8 CD 23 1 Y 1 B LYS 8 ? CE ? B LYS 8 CE 24 1 Y 1 B LYS 8 ? NZ ? B LYS 8 NZ 25 1 Y 1 B LYS 9 ? CG ? B LYS 9 CG 26 1 Y 1 B LYS 9 ? CD ? B LYS 9 CD 27 1 Y 1 B LYS 9 ? CE ? B LYS 9 CE 28 1 Y 1 B LYS 9 ? NZ ? B LYS 9 NZ 29 1 Y 1 B GLU 41 ? CB ? B GLU 41 CB 30 1 Y 1 B GLU 41 ? CG ? B GLU 41 CG 31 1 Y 1 B GLU 41 ? CD ? B GLU 41 CD 32 1 Y 1 B GLU 41 ? OE1 ? B GLU 41 OE1 33 1 Y 1 B GLU 41 ? OE2 ? B GLU 41 OE2 34 1 Y 1 B ILE 49 ? CD1 ? B ILE 49 CD1 35 1 Y 1 B TYR 53 ? CG ? B TYR 53 CG 36 1 Y 1 B TYR 53 ? CD1 ? B TYR 53 CD1 37 1 Y 1 B TYR 53 ? CD2 ? B TYR 53 CD2 38 1 Y 1 B TYR 53 ? CE1 ? B TYR 53 CE1 39 1 Y 1 B TYR 53 ? CE2 ? B TYR 53 CE2 40 1 Y 1 B TYR 53 ? CZ ? B TYR 53 CZ 41 1 Y 1 B TYR 53 ? OH ? B TYR 53 OH 42 1 Y 1 B ASP 62 ? OD1 ? B ASP 62 OD1 43 1 Y 1 B ASP 62 ? OD2 ? B ASP 62 OD2 44 1 Y 1 B ARG 77 ? CG ? B ARG 77 CG 45 1 Y 1 B ARG 77 ? CD ? B ARG 77 CD 46 1 Y 1 B ARG 77 ? NE ? B ARG 77 NE 47 1 Y 1 B ARG 77 ? CZ ? B ARG 77 CZ 48 1 Y 1 B ARG 77 ? NH1 ? B ARG 77 NH1 49 1 Y 1 B ARG 77 ? NH2 ? B ARG 77 NH2 50 1 Y 1 B LYS 86 ? NZ ? B LYS 86 NZ 51 1 Y 1 B LYS 90 ? CD ? B LYS 90 CD 52 1 Y 1 B LYS 90 ? CE ? B LYS 90 CE 53 1 Y 1 B LYS 105 ? CD ? B LYS 105 CD 54 1 Y 1 B ARG 108 ? NH2 ? B ARG 108 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A GLN 4 ? A GLN 4 5 1 Y 1 A ILE 5 ? A ILE 5 6 1 Y 1 A ARG 6 ? A ARG 6 7 1 Y 1 A SER 7 ? A SER 7 8 1 Y 1 B MET 1 ? B MET 1 9 1 Y 1 B SER 2 ? B SER 2 10 1 Y 1 B HIS 3 ? B HIS 3 11 1 Y 1 B GLN 4 ? B GLN 4 12 1 Y 1 B ILE 5 ? B ILE 5 13 1 Y 1 B ARG 6 ? B ARG 6 14 1 Y 1 B SER 7 ? B SER 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 THR N N N N 290 THR CA C N S 291 THR C C N N 292 THR O O N N 293 THR CB C N R 294 THR OG1 O N N 295 THR CG2 C N N 296 THR OXT O N N 297 THR H H N N 298 THR H2 H N N 299 THR HA H N N 300 THR HB H N N 301 THR HG1 H N N 302 THR HG21 H N N 303 THR HG22 H N N 304 THR HG23 H N N 305 THR HXT H N N 306 TRP N N N N 307 TRP CA C N S 308 TRP C C N N 309 TRP O O N N 310 TRP CB C N N 311 TRP CG C Y N 312 TRP CD1 C Y N 313 TRP CD2 C Y N 314 TRP NE1 N Y N 315 TRP CE2 C Y N 316 TRP CE3 C Y N 317 TRP CZ2 C Y N 318 TRP CZ3 C Y N 319 TRP CH2 C Y N 320 TRP OXT O N N 321 TRP H H N N 322 TRP H2 H N N 323 TRP HA H N N 324 TRP HB2 H N N 325 TRP HB3 H N N 326 TRP HD1 H N N 327 TRP HE1 H N N 328 TRP HE3 H N N 329 TRP HZ2 H N N 330 TRP HZ3 H N N 331 TRP HH2 H N N 332 TRP HXT H N N 333 TYR N N N N 334 TYR CA C N S 335 TYR C C N N 336 TYR O O N N 337 TYR CB C N N 338 TYR CG C Y N 339 TYR CD1 C Y N 340 TYR CD2 C Y N 341 TYR CE1 C Y N 342 TYR CE2 C Y N 343 TYR CZ C Y N 344 TYR OH O N N 345 TYR OXT O N N 346 TYR H H N N 347 TYR H2 H N N 348 TYR HA H N N 349 TYR HB2 H N N 350 TYR HB3 H N N 351 TYR HD1 H N N 352 TYR HD2 H N N 353 TYR HE1 H N N 354 TYR HE2 H N N 355 TYR HH H N N 356 TYR HXT H N N 357 VAL N N N N 358 VAL CA C N S 359 VAL C C N N 360 VAL O O N N 361 VAL CB C N N 362 VAL CG1 C N N 363 VAL CG2 C N N 364 VAL OXT O N N 365 VAL H H N N 366 VAL H2 H N N 367 VAL HA H N N 368 VAL HB H N N 369 VAL HG11 H N N 370 VAL HG12 H N N 371 VAL HG13 H N N 372 VAL HG21 H N N 373 VAL HG22 H N N 374 VAL HG23 H N N 375 VAL HXT H N N 376 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1U04 _pdbx_initial_refinement_model.details 'PDB ENTRY 1U04' #