HEADER TRANSFERASE 29-MAY-08 3DAL TITLE METHYLTRANSFERASE DOMAIN OF HUMAN PR DOMAIN-CONTAINING PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PR DOMAIN ZINC FINGER PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PR DOMAIN-CONTAINING PROTEIN 1, BETA-INTERFERON GENE COMPND 5 POSITIVE REGULATORY DOMAIN I-BINDING FACTOR, BLIMP-1, POSITIVE COMPND 6 REGULATORY DOMAIN I-BINDING FACTOR 1, PRDI-BINDING FACTOR 1, PRDI- COMPND 7 BF1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRDM1, BLIMP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS METHYLTRANSFERASE, PRDM1, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, DNA-BINDING, METAL-BINDING, NUCLEUS, POLYMORPHISM, KEYWDS 3 REPRESSOR, TRANSCRIPTION, TRANSCRIPTION REGULATION, ZINC, ZINC- KEYWDS 4 FINGER, DNA BINDING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.AMAYA,H.ZENG,T.ANTOSHENKO,A.DONG,P.LOPPNAU,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,J.MIN,A.N.PLOTNIKOV,H.WU, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 21-FEB-24 3DAL 1 SEQADV REVDAT 3 25-OCT-17 3DAL 1 REMARK REVDAT 2 24-FEB-09 3DAL 1 VERSN REVDAT 1 12-AUG-08 3DAL 0 JRNL AUTH H.ZENG,M.F.AMAYA,T.ANTOSHENKO,A.DONG,P.LOPPNAU,A.BOCHKAREV, JRNL AUTH 2 J.MIN,A.N.PLOTNIKOV,H.WU JRNL TITL THE CRYSTAL STRUCTURE OF METHYLTRANSFERASE DOMAIN OF HUMAN JRNL TITL 2 PR DOMAIN-CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 57644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2930 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3832 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2805 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2983 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4066 ; 1.571 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 6.435 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;36.035 ;23.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;12.643 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2345 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1278 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2039 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 246 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1837 ; 1.294 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2899 ; 1.918 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1348 ; 3.019 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1167 ; 4.609 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28268 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57924 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PURIFIED PRDM1 WAS CRYSTALLIZED USING REMARK 280 HANGING DROP VAPOR DIFFUSION METHOD AT 20 C BY MIXING 1.5 L OF REMARK 280 THE PROTEIN SOLUTION WITH 1.5 L OF THE RESERVOIR SOLUTION REMARK 280 CONTAINING 2.0 M NA FORMIDE, 0.1 M SODIUM ACETATE, PH 4.6., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.41700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.33150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.33150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.41700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -64.96000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 MET A 2 REMARK 465 ASP A 3 REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 465 ASP A 6 REMARK 465 SER A 32 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 ASP A 35 REMARK 465 GLY A 36 REMARK 465 GLY A 37 REMARK 465 THR A 38 REMARK 465 SER A 39 REMARK 465 LYS A 91 REMARK 465 ASN A 92 REMARK 465 ALA A 93 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 LYS B -1 REMARK 465 LYS B 1 REMARK 465 MET B 2 REMARK 465 ASP B 3 REMARK 465 MET B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 6 REMARK 465 TRP B 30 REMARK 465 ASP B 31 REMARK 465 SER B 32 REMARK 465 GLY B 33 REMARK 465 ALA B 34 REMARK 465 ASP B 35 REMARK 465 GLY B 36 REMARK 465 GLY B 37 REMARK 465 THR B 38 REMARK 465 SER B 39 REMARK 465 ASN B 57 REMARK 465 LYS B 91 REMARK 465 ASN B 92 REMARK 465 ALA B 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -10 OG REMARK 470 LYS A -1 CG CD CE NZ REMARK 470 TRP A 30 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 30 CZ3 CH2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 GLU A 59 CD OE1 OE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ASP B 87 CG OD1 OD2 REMARK 470 LYS B 96 CE NZ REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 ARG B 132 NE CZ NH1 NH2 REMARK 470 GLN B 186 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 335 O HOH A 340 2.04 REMARK 500 OE2 GLU A 43 O HOH A 361 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 123 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 30 -36.20 -145.80 REMARK 500 REMARK 500 REMARK: NULL DBREF 3DAL A 1 186 UNP O75626 PRDM1_HUMAN 2 187 DBREF 3DAL B 1 186 UNP O75626 PRDM1_HUMAN 2 187 SEQADV 3DAL SER A -10 UNP O75626 EXPRESSION TAG SEQADV 3DAL SER A -9 UNP O75626 EXPRESSION TAG SEQADV 3DAL GLY A -8 UNP O75626 EXPRESSION TAG SEQADV 3DAL LEU A -7 UNP O75626 EXPRESSION TAG SEQADV 3DAL VAL A -6 UNP O75626 EXPRESSION TAG SEQADV 3DAL PRO A -5 UNP O75626 EXPRESSION TAG SEQADV 3DAL ARG A -4 UNP O75626 EXPRESSION TAG SEQADV 3DAL GLY A -3 UNP O75626 EXPRESSION TAG SEQADV 3DAL SER A -2 UNP O75626 EXPRESSION TAG SEQADV 3DAL LYS A -1 UNP O75626 EXPRESSION TAG SEQADV 3DAL SER B -10 UNP O75626 EXPRESSION TAG SEQADV 3DAL SER B -9 UNP O75626 EXPRESSION TAG SEQADV 3DAL GLY B -8 UNP O75626 EXPRESSION TAG SEQADV 3DAL LEU B -7 UNP O75626 EXPRESSION TAG SEQADV 3DAL VAL B -6 UNP O75626 EXPRESSION TAG SEQADV 3DAL PRO B -5 UNP O75626 EXPRESSION TAG SEQADV 3DAL ARG B -4 UNP O75626 EXPRESSION TAG SEQADV 3DAL GLY B -3 UNP O75626 EXPRESSION TAG SEQADV 3DAL SER B -2 UNP O75626 EXPRESSION TAG SEQADV 3DAL LYS B -1 UNP O75626 EXPRESSION TAG SEQRES 1 A 196 SER SER GLY LEU VAL PRO ARG GLY SER LYS LYS MET ASP SEQRES 2 A 196 MET GLU ASP ALA ASP MET THR LEU TRP THR GLU ALA GLU SEQRES 3 A 196 PHE GLU GLU LYS CYS THR TYR ILE VAL ASN ASP HIS PRO SEQRES 4 A 196 TRP ASP SER GLY ALA ASP GLY GLY THR SER VAL GLN ALA SEQRES 5 A 196 GLU ALA SER LEU PRO ARG ASN LEU LEU PHE LYS TYR ALA SEQRES 6 A 196 THR ASN SER GLU GLU VAL ILE GLY VAL MET SER LYS GLU SEQRES 7 A 196 TYR ILE PRO LYS GLY THR ARG PHE GLY PRO LEU ILE GLY SEQRES 8 A 196 GLU ILE TYR THR ASN ASP THR VAL PRO LYS ASN ALA ASN SEQRES 9 A 196 ARG LYS TYR PHE TRP ARG ILE TYR SER ARG GLY GLU LEU SEQRES 10 A 196 HIS HIS PHE ILE ASP GLY PHE ASN GLU GLU LYS SER ASN SEQRES 11 A 196 TRP MET ARG TYR VAL ASN PRO ALA HIS SER PRO ARG GLU SEQRES 12 A 196 GLN ASN LEU ALA ALA CYS GLN ASN GLY MET ASN ILE TYR SEQRES 13 A 196 PHE TYR THR ILE LYS PRO ILE PRO ALA ASN GLN GLU LEU SEQRES 14 A 196 LEU VAL TRP TYR CYS ARG ASP PHE ALA GLU ARG LEU HIS SEQRES 15 A 196 TYR PRO TYR PRO GLY GLU LEU THR MET MET ASN LEU THR SEQRES 16 A 196 GLN SEQRES 1 B 196 SER SER GLY LEU VAL PRO ARG GLY SER LYS LYS MET ASP SEQRES 2 B 196 MET GLU ASP ALA ASP MET THR LEU TRP THR GLU ALA GLU SEQRES 3 B 196 PHE GLU GLU LYS CYS THR TYR ILE VAL ASN ASP HIS PRO SEQRES 4 B 196 TRP ASP SER GLY ALA ASP GLY GLY THR SER VAL GLN ALA SEQRES 5 B 196 GLU ALA SER LEU PRO ARG ASN LEU LEU PHE LYS TYR ALA SEQRES 6 B 196 THR ASN SER GLU GLU VAL ILE GLY VAL MET SER LYS GLU SEQRES 7 B 196 TYR ILE PRO LYS GLY THR ARG PHE GLY PRO LEU ILE GLY SEQRES 8 B 196 GLU ILE TYR THR ASN ASP THR VAL PRO LYS ASN ALA ASN SEQRES 9 B 196 ARG LYS TYR PHE TRP ARG ILE TYR SER ARG GLY GLU LEU SEQRES 10 B 196 HIS HIS PHE ILE ASP GLY PHE ASN GLU GLU LYS SER ASN SEQRES 11 B 196 TRP MET ARG TYR VAL ASN PRO ALA HIS SER PRO ARG GLU SEQRES 12 B 196 GLN ASN LEU ALA ALA CYS GLN ASN GLY MET ASN ILE TYR SEQRES 13 B 196 PHE TYR THR ILE LYS PRO ILE PRO ALA ASN GLN GLU LEU SEQRES 14 B 196 LEU VAL TRP TYR CYS ARG ASP PHE ALA GLU ARG LEU HIS SEQRES 15 B 196 TYR PRO TYR PRO GLY GLU LEU THR MET MET ASN LEU THR SEQRES 16 B 196 GLN FORMUL 3 HOH *307(H2 O) HELIX 1 1 GLY A -8 GLY A -3 1 6 HELIX 2 2 THR A 13 CYS A 21 1 9 HELIX 3 3 VAL A 40 SER A 45 1 6 HELIX 4 4 ASN A 120 VAL A 125 5 6 HELIX 5 5 CYS A 164 LEU A 171 1 8 HELIX 6 6 THR A 180 GLN A 186 1 7 HELIX 7 7 THR B 13 CYS B 21 1 9 HELIX 8 8 VAL B 40 SER B 45 1 6 HELIX 9 9 THR B 85 VAL B 89 5 5 HELIX 10 10 ASN B 120 VAL B 125 5 6 HELIX 11 11 CYS B 164 LEU B 171 1 8 HELIX 12 12 THR B 180 THR B 185 1 6 SHEET 1 A 6 TYR A 23 VAL A 25 0 SHEET 2 A 6 THR A 74 PHE A 76 1 O ARG A 75 N VAL A 25 SHEET 3 A 6 ASN A 144 THR A 149 -1 O PHE A 147 N PHE A 76 SHEET 4 A 6 LEU A 136 ASN A 141 -1 N ALA A 137 O TYR A 148 SHEET 5 A 6 LEU A 160 TYR A 163 1 O TRP A 162 N ALA A 138 SHEET 6 A 6 ASN A 126 PRO A 127 1 N ASN A 126 O VAL A 161 SHEET 1 B 2 LEU A 50 TYR A 54 0 SHEET 2 B 2 VAL A 61 SER A 66 -1 O ILE A 62 N LYS A 53 SHEET 1 C 3 GLU A 82 TYR A 84 0 SHEET 2 C 3 GLU A 106 ASP A 112 -1 O ASP A 112 N GLU A 82 SHEET 3 C 3 PHE A 98 SER A 103 -1 N TRP A 99 O ILE A 111 SHEET 1 D 6 TYR B 23 VAL B 25 0 SHEET 2 D 6 THR B 74 PHE B 76 1 O ARG B 75 N VAL B 25 SHEET 3 D 6 ASN B 144 THR B 149 -1 O PHE B 147 N PHE B 76 SHEET 4 D 6 LEU B 136 ASN B 141 -1 N ALA B 137 O TYR B 148 SHEET 5 D 6 LEU B 160 TYR B 163 1 O TRP B 162 N ALA B 138 SHEET 6 D 6 ASN B 126 PRO B 127 1 N ASN B 126 O VAL B 161 SHEET 1 E 2 LEU B 50 TYR B 54 0 SHEET 2 E 2 VAL B 61 SER B 66 -1 O MET B 65 N LEU B 51 SHEET 1 F 3 GLU B 82 TYR B 84 0 SHEET 2 F 3 GLU B 106 ASP B 112 -1 O ASP B 112 N GLU B 82 SHEET 3 F 3 PHE B 98 SER B 103 -1 N ILE B 101 O HIS B 108 CISPEP 1 PRO A 29 TRP A 30 0 -14.28 CISPEP 2 GLY A 77 PRO A 78 0 11.47 CISPEP 3 GLY B 77 PRO B 78 0 8.72 CRYST1 64.834 64.960 112.663 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015394 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008876 0.00000