HEADER LIGASE 30-MAY-08 3DB4 TITLE CRYSTAL STRUCTURE OF THE TANDEM TUDOR DOMAINS OF THE E3 UBIQUITIN- TITLE 2 PROTEIN LIGASE UHRF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TANDEM TUDOR DOMAINS (UNP RESIDUES 126-285); COMPND 5 SYNONYM: UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN COMPND 6 1, UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER DOMAINS PROTEIN 1, COMPND 7 INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA, TRANSCRIPTION FACTOR COMPND 8 ICBP90, NUCLEAR ZINC FINGER PROTEIN NP95, NUCLEAR PROTEIN 95, HUNP95, COMPND 9 RING FINGER PROTEIN 106; COMPND 10 EC: 6.3.2.-; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UHRF1, ICBP90, NP95, RNF106; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CELL CYCLE, DNA DAMAGE, DNA REPAIR, TANDEM TUDOR DOMAINS, LIGASE, KEYWDS 2 METAL BINDING, DNA REPLICATION, TRANSCRIPTIONAL SILENCING, KEYWDS 3 CHROMATIN, PHOSPHORYLATION, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 4 UBL CONJUGATION PATHWAY, ZINC-FINGER, STRUCTURAL GENOMICS, KEYWDS 5 STRUCTURAL GENOMICS CONSORTIUM, SGC, DNA-BINDING, METAL-BINDING, KEYWDS 6 NUCLEUS, PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,G.V.AVVAKUMOV,S.XUE,A.DONG,Y.LI,C.BOUNTRA,J.WEIGELT, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 18-APR-12 3DB4 1 JRNL VERSN REVDAT 3 13-APR-11 3DB4 1 JRNL REVDAT 2 24-FEB-09 3DB4 1 VERSN REVDAT 1 16-SEP-08 3DB4 0 JRNL AUTH N.NADY,A.LEMAK,J.R.WALKER,G.V.AVVAKUMOV,M.S.KARETA,M.ACHOUR, JRNL AUTH 2 S.XUE,S.DUAN,A.ALLALI-HASSANI,X.ZUO,Y.X.WANG,C.BRONNER, JRNL AUTH 3 F.CHEDIN,C.H.ARROWSMITH,S.DHE-PAGANON JRNL TITL RECOGNITION OF MULTIVALENT HISTONE STATES ASSOCIATED WITH JRNL TITL 2 HETEROCHROMATIN BY UHRF1 PROTEIN. JRNL REF J.BIOL.CHEM. V. 286 24300 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21489993 JRNL DOI 10.1074/JBC.M111.234104 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 458 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 633 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1111 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.37000 REMARK 3 B22 (A**2) : -2.37000 REMARK 3 B33 (A**2) : 3.56000 REMARK 3 B12 (A**2) : -1.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.268 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.247 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1134 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1537 ; 1.055 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 131 ; 6.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;38.181 ;24.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 189 ;15.823 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.259 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 168 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 875 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 407 ; 0.196 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 733 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 65 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.214 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.070 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 688 ; 0.723 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1087 ; 1.186 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 512 ; 1.692 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 450 ; 2.231 ; 7.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 129 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0329 -4.4302 12.9678 REMARK 3 T TENSOR REMARK 3 T11: 0.1809 T22: 0.0796 REMARK 3 T33: 0.4240 T12: -0.1537 REMARK 3 T13: 0.1738 T23: -0.2231 REMARK 3 L TENSOR REMARK 3 L11: 9.9198 L22: 21.7284 REMARK 3 L33: 22.5077 L12: -2.0448 REMARK 3 L13: -0.2850 L23: 9.0365 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: -0.3601 S13: 0.6523 REMARK 3 S21: 1.5363 S22: -0.6760 S23: 1.8289 REMARK 3 S31: -0.3700 S32: -0.6127 S33: 0.6489 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0582 -3.3424 12.0231 REMARK 3 T TENSOR REMARK 3 T11: 0.1911 T22: 0.1103 REMARK 3 T33: 0.3348 T12: -0.0911 REMARK 3 T13: 0.2421 T23: -0.1558 REMARK 3 L TENSOR REMARK 3 L11: 8.7520 L22: 18.3889 REMARK 3 L33: 7.5090 L12: 0.4795 REMARK 3 L13: -2.9553 L23: 1.9528 REMARK 3 S TENSOR REMARK 3 S11: 0.5914 S12: -0.6660 S13: 0.7044 REMARK 3 S21: 1.4368 S22: -0.5575 S23: 2.4833 REMARK 3 S31: -0.1353 S32: -0.6448 S33: -0.0339 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7040 -7.8448 8.6417 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.1678 REMARK 3 T33: 0.2481 T12: -0.0290 REMARK 3 T13: 0.0263 T23: -0.1185 REMARK 3 L TENSOR REMARK 3 L11: 1.5849 L22: 16.7017 REMARK 3 L33: 2.6111 L12: 2.1741 REMARK 3 L13: -0.8565 L23: 4.2539 REMARK 3 S TENSOR REMARK 3 S11: 0.3877 S12: -0.2526 S13: 0.3353 REMARK 3 S21: 0.5116 S22: -0.4099 S23: 1.0701 REMARK 3 S31: -0.0107 S32: -0.1172 S33: 0.0222 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 35.0102 -20.7329 -2.5175 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0942 REMARK 3 T33: -0.0036 T12: 0.0638 REMARK 3 T13: -0.0819 T23: -0.1127 REMARK 3 L TENSOR REMARK 3 L11: 10.0904 L22: 17.0071 REMARK 3 L33: 6.5009 L12: 5.8270 REMARK 3 L13: -0.6809 L23: 2.1699 REMARK 3 S TENSOR REMARK 3 S11: -0.3780 S12: 0.6861 S13: -0.4233 REMARK 3 S21: -0.8944 S22: -0.1287 S23: 0.0581 REMARK 3 S31: -0.3932 S32: -0.0313 S33: 0.5068 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): 31.1818 -25.0660 -2.7152 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.1248 REMARK 3 T33: 0.1981 T12: 0.0334 REMARK 3 T13: -0.1398 T23: -0.1951 REMARK 3 L TENSOR REMARK 3 L11: 4.5071 L22: 4.4648 REMARK 3 L33: 4.8926 L12: 4.2198 REMARK 3 L13: -1.3901 L23: 0.2132 REMARK 3 S TENSOR REMARK 3 S11: -0.3517 S12: 0.3259 S13: -0.7799 REMARK 3 S21: -0.7555 S22: -0.4503 S23: 1.5670 REMARK 3 S31: -0.3360 S32: -0.3040 S33: 0.8021 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 249 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2952 -28.5171 -6.2104 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1732 REMARK 3 T33: 0.2035 T12: 0.0109 REMARK 3 T13: -0.1263 T23: -0.2226 REMARK 3 L TENSOR REMARK 3 L11: 8.0307 L22: 19.4094 REMARK 3 L33: 3.0002 L12: -12.0455 REMARK 3 L13: -4.5723 L23: 6.1283 REMARK 3 S TENSOR REMARK 3 S11: 0.3977 S12: 0.2734 S13: 0.7717 REMARK 3 S21: -1.7340 S22: -0.4129 S23: -0.8086 REMARK 3 S31: -0.6504 S32: 0.0524 S33: 0.0152 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 263 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2854 -21.1984 -3.8379 REMARK 3 T TENSOR REMARK 3 T11: 0.1663 T22: 0.0741 REMARK 3 T33: 0.0918 T12: -0.0444 REMARK 3 T13: -0.0853 T23: -0.1378 REMARK 3 L TENSOR REMARK 3 L11: 7.3778 L22: 11.2782 REMARK 3 L33: 13.8184 L12: 0.1693 REMARK 3 L13: -2.0667 L23: 1.1336 REMARK 3 S TENSOR REMARK 3 S11: 0.0297 S12: 1.1032 S13: -0.1941 REMARK 3 S21: -0.7441 S22: -0.1554 S23: 1.1895 REMARK 3 S31: -0.3496 S32: -0.4742 S33: 0.1258 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2257 -19.0540 12.3475 REMARK 3 T TENSOR REMARK 3 T11: 0.4401 T22: 0.3836 REMARK 3 T33: 0.6014 T12: -0.0568 REMARK 3 T13: 0.2986 T23: -0.2120 REMARK 3 L TENSOR REMARK 3 L11: 9.2816 L22: 7.3923 REMARK 3 L33: 62.3614 L12: -2.2258 REMARK 3 L13: -23.9260 L23: 7.9059 REMARK 3 S TENSOR REMARK 3 S11: -0.3596 S12: -2.2040 S13: 0.6941 REMARK 3 S21: 1.8782 S22: -0.0735 S23: 2.1380 REMARK 3 S31: 0.9719 S32: -0.9634 S33: 0.4331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS, ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 3DB4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB047817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9579 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 25.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45100 REMARK 200 FOR SHELL : 4.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA SET USED FOR PHASING WAS COLLECTED AT 0.97942 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 8000, 0.1 M SODIUM REMARK 280 CACODYLATE, 0.2 M AMMONIUM SULFATE, 0.001 M TCEP, PH 6.50, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.89667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.44833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.89667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.44833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 125 REMARK 465 MSE A 126 REMARK 465 TRP A 127 REMARK 465 ASP A 128 REMARK 465 GLY A 133 REMARK 465 LYS A 162 REMARK 465 ALA A 163 REMARK 465 PRO A 164 REMARK 465 SER A 165 REMARK 465 ARG A 166 REMARK 465 ASP A 167 REMARK 465 GLU A 168 REMARK 465 PRO A 169 REMARK 465 CYS A 170 REMARK 465 SER A 171 REMARK 465 SER A 172 REMARK 465 THR A 173 REMARK 465 SER A 174 REMARK 465 ARG A 175 REMARK 465 PRO A 176 REMARK 465 ALA A 177 REMARK 465 LEU A 178 REMARK 465 GLU A 179 REMARK 465 GLY A 262 REMARK 465 GLY A 284 REMARK 465 GLU A 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 202 CZ NH1 NH2 REMARK 470 ARG A 209 NH1 NH2 REMARK 470 LYS A 213 CE NZ REMARK 470 LYS A 233 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 -10.74 85.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BI7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SRA DOMAIN OF E3 UBIQUITIN-PROTEIN REMARK 900 LIGASE UHRF1 REMARK 900 RELATED ID: 3CLZ RELATED DB: PDB REMARK 900 THE SET AND RING ASSOCIATED (SRA) DOMAIN OF UHRF1 BOUND TO REMARK 900 METHYLATED DNA REMARK 900 RELATED ID: 2FAZ RELATED DB: PDB REMARK 900 UBIQUITIN-LIKE DOMAIN OF HUMAN NUCLEAR ZINC FINGER PROTEIN REMARK 900 NP95 REMARK 900 RELATED ID: 3DB3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TANDEM TUDOR DOMAINS OF THE E3 REMARK 900 UBIQUITIN-PROTEIN LIGASE UHRF1 IN COMPLEX WITH A REMARK 900 TRIMETHYLATED HISTONE H3-K9 PEPTIDE DBREF 3DB4 A 126 285 UNP Q96T88 UHRF1_HUMAN 126 285 SEQADV 3DB4 GLY A 125 UNP Q96T88 EXPRESSION TAG SEQRES 1 A 161 GLY MSE TRP ASP GLU THR GLU LEU GLY LEU TYR LYS VAL SEQRES 2 A 161 ASN GLU TYR VAL ASP ALA ARG ASP THR ASN MSE GLY ALA SEQRES 3 A 161 TRP PHE GLU ALA GLN VAL VAL ARG VAL THR ARG LYS ALA SEQRES 4 A 161 PRO SER ARG ASP GLU PRO CYS SER SER THR SER ARG PRO SEQRES 5 A 161 ALA LEU GLU GLU ASP VAL ILE TYR HIS VAL LYS TYR ASP SEQRES 6 A 161 ASP TYR PRO GLU ASN GLY VAL VAL GLN MSE ASN SER ARG SEQRES 7 A 161 ASP VAL ARG ALA ARG ALA ARG THR ILE ILE LYS TRP GLN SEQRES 8 A 161 ASP LEU GLU VAL GLY GLN VAL VAL MSE LEU ASN TYR ASN SEQRES 9 A 161 PRO ASP ASN PRO LYS GLU ARG GLY PHE TRP TYR ASP ALA SEQRES 10 A 161 GLU ILE SER ARG LYS ARG GLU THR ARG THR ALA ARG GLU SEQRES 11 A 161 LEU TYR ALA ASN VAL VAL LEU GLY ASP ASP SER LEU ASN SEQRES 12 A 161 ASP CYS ARG ILE ILE PHE VAL ASP GLU VAL PHE LYS ILE SEQRES 13 A 161 GLU ARG PRO GLY GLU MODRES 3DB4 MSE A 148 MET SELENOMETHIONINE MODRES 3DB4 MSE A 199 MET SELENOMETHIONINE MODRES 3DB4 MSE A 224 MET SELENOMETHIONINE HET MSE A 148 8 HET MSE A 199 8 HET MSE A 224 8 HET SO4 A 301 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *34(H2 O) HELIX 1 1 TYR A 191 ASN A 194 5 4 HELIX 2 2 LYS A 213 LEU A 217 5 5 SHEET 1 A 5 VAL A 196 ASN A 200 0 SHEET 2 A 5 ILE A 183 TYR A 188 -1 N TYR A 184 O MSE A 199 SHEET 3 A 5 TRP A 151 THR A 160 -1 N ARG A 158 O HIS A 185 SHEET 4 A 5 TYR A 140 ARG A 144 -1 N VAL A 141 O ALA A 154 SHEET 5 A 5 VAL A 204 ALA A 206 -1 O ARG A 205 N ASP A 142 SHEET 1 B 5 SER A 265 ILE A 271 0 SHEET 2 B 5 ARG A 253 VAL A 260 -1 N VAL A 259 O LEU A 266 SHEET 3 B 5 PHE A 237 GLU A 248 -1 N ARG A 247 O GLU A 254 SHEET 4 B 5 VAL A 222 TYR A 227 -1 N VAL A 223 O ALA A 241 SHEET 5 B 5 PHE A 278 LYS A 279 -1 O PHE A 278 N MSE A 224 LINK C ASN A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N GLY A 149 1555 1555 1.33 LINK C GLN A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N ASN A 200 1555 1555 1.33 LINK C VAL A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N LEU A 225 1555 1555 1.33 SITE 1 AC1 6 ASN A 226 ARG A 235 TRP A 238 THR A 249 SITE 2 AC1 6 HOH A 322 HOH A 328 CRYST1 98.654 98.654 43.345 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010136 0.005852 0.000000 0.00000 SCALE2 0.000000 0.011705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023071 0.00000