data_3DBA # _entry.id 3DBA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DBA pdb_00003dba 10.2210/pdb3dba/pdb RCSB RCSB047823 ? ? WWPDB D_1000047823 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DBA _pdbx_database_status.recvd_initial_deposition_date 2008-05-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Martinez, S.E.' 1 'Heikaus, C.C.' 2 'Klevit, R.E.' 3 'Beavo, J.A.' 4 # _citation.id primary _citation.title ;The Structure of the GAF A Domain from Phosphodiesterase 6C Reveals Determinants of cGMP Binding, a Conserved Binding Surface, and a Large cGMP-dependent Conformational Change. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 283 _citation.page_first 25913 _citation.page_last 25919 _citation.year 2008 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18614542 _citation.pdbx_database_id_DOI 10.1074/jbc.M802891200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Martinez, S.E.' 1 ? primary 'Heikaus, C.C.' 2 ? primary 'Klevit, R.E.' 3 ? primary 'Beavo, J.A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' ; 20725.941 2 3.1.4.35 ? 'GAF A domain (UNP residues 55-225)' ? 2 non-polymer syn "GUANOSINE-3',5'-MONOPHOSPHATE" 345.205 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 5 ? ? ? ? 4 water nat water 18.015 79 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'cGMP phosphodiesterase 6C' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKE TVFPLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVF KKYLNFISLVLRLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MRLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKE TVFPLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVF KKYLNFISLVLRLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-3',5'-MONOPHOSPHATE" 35G 3 GLYCEROL GOL 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 LEU n 1 4 GLU n 1 5 GLU n 1 6 CYS n 1 7 ASN n 1 8 ILE n 1 9 LEU n 1 10 PHE n 1 11 GLU n 1 12 LEU n 1 13 LEU n 1 14 THR n 1 15 GLU n 1 16 ILE n 1 17 GLN n 1 18 ASP n 1 19 GLU n 1 20 ALA n 1 21 GLY n 1 22 SER n 1 23 MET n 1 24 GLU n 1 25 LYS n 1 26 ILE n 1 27 VAL n 1 28 HIS n 1 29 LYS n 1 30 THR n 1 31 LEU n 1 32 GLN n 1 33 ARG n 1 34 LEU n 1 35 SER n 1 36 GLN n 1 37 LEU n 1 38 LEU n 1 39 ALA n 1 40 ALA n 1 41 ASP n 1 42 ARG n 1 43 CYS n 1 44 SER n 1 45 MET n 1 46 PHE n 1 47 ILE n 1 48 CYS n 1 49 ARG n 1 50 SER n 1 51 ARG n 1 52 ASN n 1 53 GLY n 1 54 ILE n 1 55 PRO n 1 56 GLU n 1 57 VAL n 1 58 ALA n 1 59 THR n 1 60 ARG n 1 61 LEU n 1 62 LEU n 1 63 ASN n 1 64 VAL n 1 65 THR n 1 66 PRO n 1 67 THR n 1 68 SER n 1 69 LYS n 1 70 PHE n 1 71 GLU n 1 72 ASP n 1 73 ASN n 1 74 LEU n 1 75 VAL n 1 76 ASN n 1 77 PRO n 1 78 ASP n 1 79 LYS n 1 80 GLU n 1 81 THR n 1 82 VAL n 1 83 PHE n 1 84 PRO n 1 85 LEU n 1 86 ASP n 1 87 ILE n 1 88 GLY n 1 89 ILE n 1 90 ALA n 1 91 GLY n 1 92 TRP n 1 93 VAL n 1 94 ALA n 1 95 HIS n 1 96 THR n 1 97 LYS n 1 98 LYS n 1 99 PHE n 1 100 PHE n 1 101 ASN n 1 102 ILE n 1 103 PRO n 1 104 ASP n 1 105 VAL n 1 106 LYS n 1 107 LYS n 1 108 ASN n 1 109 ASN n 1 110 HIS n 1 111 PHE n 1 112 SER n 1 113 ASP n 1 114 TYR n 1 115 LEU n 1 116 ASP n 1 117 LYS n 1 118 LYS n 1 119 THR n 1 120 GLY n 1 121 TYR n 1 122 THR n 1 123 THR n 1 124 VAL n 1 125 ASN n 1 126 MET n 1 127 MET n 1 128 ALA n 1 129 ILE n 1 130 PRO n 1 131 ILE n 1 132 THR n 1 133 GLN n 1 134 GLY n 1 135 LYS n 1 136 GLU n 1 137 VAL n 1 138 LEU n 1 139 ALA n 1 140 VAL n 1 141 VAL n 1 142 MET n 1 143 ALA n 1 144 LEU n 1 145 ASN n 1 146 LYS n 1 147 LEU n 1 148 ASN n 1 149 ALA n 1 150 SER n 1 151 GLU n 1 152 PHE n 1 153 SER n 1 154 LYS n 1 155 GLU n 1 156 ASP n 1 157 GLU n 1 158 GLU n 1 159 VAL n 1 160 PHE n 1 161 LYS n 1 162 LYS n 1 163 TYR n 1 164 LEU n 1 165 ASN n 1 166 PHE n 1 167 ILE n 1 168 SER n 1 169 LEU n 1 170 VAL n 1 171 LEU n 1 172 ARG n 1 173 LEU n 1 174 GLU n 1 175 HIS n 1 176 HIS n 1 177 HIS n 1 178 HIS n 1 179 HIS n 1 180 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bantam,chickens _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PDE6C _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Rhode Island red' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'cone cells of retina' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Gallus gallus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41 cells' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pRUNH _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 35G non-polymer . "GUANOSINE-3',5'-MONOPHOSPHATE" ? 'C10 H12 N5 O7 P' 345.205 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 54 ? ? ? A . n A 1 2 ARG 2 55 55 ARG ARG A . n A 1 3 LEU 3 56 56 LEU LEU A . n A 1 4 GLU 4 57 57 GLU GLU A . n A 1 5 GLU 5 58 58 GLU GLU A . n A 1 6 CYS 6 59 59 CYS CYS A . n A 1 7 ASN 7 60 60 ASN ASN A . n A 1 8 ILE 8 61 61 ILE ILE A . n A 1 9 LEU 9 62 62 LEU LEU A . n A 1 10 PHE 10 63 63 PHE PHE A . n A 1 11 GLU 11 64 64 GLU GLU A . n A 1 12 LEU 12 65 65 LEU LEU A . n A 1 13 LEU 13 66 66 LEU LEU A . n A 1 14 THR 14 67 67 THR THR A . n A 1 15 GLU 15 68 68 GLU GLU A . n A 1 16 ILE 16 69 69 ILE ILE A . n A 1 17 GLN 17 70 70 GLN GLN A . n A 1 18 ASP 18 71 71 ASP ASP A . n A 1 19 GLU 19 72 72 GLU GLU A . n A 1 20 ALA 20 73 73 ALA ALA A . n A 1 21 GLY 21 74 74 GLY GLY A . n A 1 22 SER 22 75 75 SER SER A . n A 1 23 MET 23 76 76 MET MET A . n A 1 24 GLU 24 77 77 GLU GLU A . n A 1 25 LYS 25 78 78 LYS LYS A . n A 1 26 ILE 26 79 79 ILE ILE A . n A 1 27 VAL 27 80 80 VAL VAL A . n A 1 28 HIS 28 81 81 HIS HIS A . n A 1 29 LYS 29 82 82 LYS LYS A . n A 1 30 THR 30 83 83 THR THR A . n A 1 31 LEU 31 84 84 LEU LEU A . n A 1 32 GLN 32 85 85 GLN GLN A . n A 1 33 ARG 33 86 86 ARG ARG A . n A 1 34 LEU 34 87 87 LEU LEU A . n A 1 35 SER 35 88 88 SER SER A . n A 1 36 GLN 36 89 89 GLN GLN A . n A 1 37 LEU 37 90 90 LEU LEU A . n A 1 38 LEU 38 91 91 LEU LEU A . n A 1 39 ALA 39 92 92 ALA ALA A . n A 1 40 ALA 40 93 93 ALA ALA A . n A 1 41 ASP 41 94 94 ASP ASP A . n A 1 42 ARG 42 95 95 ARG ARG A . n A 1 43 CYS 43 96 96 CYS CYS A . n A 1 44 SER 44 97 97 SER SER A . n A 1 45 MET 45 98 98 MET MET A . n A 1 46 PHE 46 99 99 PHE PHE A . n A 1 47 ILE 47 100 100 ILE ILE A . n A 1 48 CYS 48 101 101 CYS CYS A . n A 1 49 ARG 49 102 102 ARG ARG A . n A 1 50 SER 50 103 103 SER SER A . n A 1 51 ARG 51 104 104 ARG ARG A . n A 1 52 ASN 52 105 105 ASN ASN A . n A 1 53 GLY 53 106 106 GLY GLY A . n A 1 54 ILE 54 107 107 ILE ILE A . n A 1 55 PRO 55 108 108 PRO PRO A . n A 1 56 GLU 56 109 109 GLU GLU A . n A 1 57 VAL 57 110 110 VAL VAL A . n A 1 58 ALA 58 111 111 ALA ALA A . n A 1 59 THR 59 112 112 THR THR A . n A 1 60 ARG 60 113 113 ARG ARG A . n A 1 61 LEU 61 114 114 LEU LEU A . n A 1 62 LEU 62 115 115 LEU LEU A . n A 1 63 ASN 63 116 116 ASN ASN A . n A 1 64 VAL 64 117 117 VAL VAL A . n A 1 65 THR 65 118 118 THR THR A . n A 1 66 PRO 66 119 119 PRO PRO A . n A 1 67 THR 67 120 120 THR THR A . n A 1 68 SER 68 121 121 SER SER A . n A 1 69 LYS 69 122 122 LYS LYS A . n A 1 70 PHE 70 123 123 PHE PHE A . n A 1 71 GLU 71 124 124 GLU GLU A . n A 1 72 ASP 72 125 125 ASP ASP A . n A 1 73 ASN 73 126 126 ASN ASN A . n A 1 74 LEU 74 127 127 LEU LEU A . n A 1 75 VAL 75 128 128 VAL VAL A . n A 1 76 ASN 76 129 129 ASN ASN A . n A 1 77 PRO 77 130 130 PRO PRO A . n A 1 78 ASP 78 131 131 ASP ASP A . n A 1 79 LYS 79 132 132 LYS LYS A . n A 1 80 GLU 80 133 133 GLU GLU A . n A 1 81 THR 81 134 134 THR THR A . n A 1 82 VAL 82 135 135 VAL VAL A . n A 1 83 PHE 83 136 136 PHE PHE A . n A 1 84 PRO 84 137 137 PRO PRO A . n A 1 85 LEU 85 138 138 LEU LEU A . n A 1 86 ASP 86 139 139 ASP ASP A . n A 1 87 ILE 87 140 140 ILE ILE A . n A 1 88 GLY 88 141 141 GLY GLY A . n A 1 89 ILE 89 142 142 ILE ILE A . n A 1 90 ALA 90 143 143 ALA ALA A . n A 1 91 GLY 91 144 144 GLY GLY A . n A 1 92 TRP 92 145 145 TRP TRP A . n A 1 93 VAL 93 146 146 VAL VAL A . n A 1 94 ALA 94 147 147 ALA ALA A . n A 1 95 HIS 95 148 148 HIS HIS A . n A 1 96 THR 96 149 149 THR THR A . n A 1 97 LYS 97 150 150 LYS LYS A . n A 1 98 LYS 98 151 151 LYS LYS A . n A 1 99 PHE 99 152 152 PHE PHE A . n A 1 100 PHE 100 153 153 PHE PHE A . n A 1 101 ASN 101 154 154 ASN ASN A . n A 1 102 ILE 102 155 155 ILE ILE A . n A 1 103 PRO 103 156 156 PRO PRO A . n A 1 104 ASP 104 157 157 ASP ASP A . n A 1 105 VAL 105 158 158 VAL VAL A . n A 1 106 LYS 106 159 159 LYS LYS A . n A 1 107 LYS 107 160 160 LYS LYS A . n A 1 108 ASN 108 161 161 ASN ASN A . n A 1 109 ASN 109 162 162 ASN ASN A . n A 1 110 HIS 110 163 163 HIS HIS A . n A 1 111 PHE 111 164 164 PHE PHE A . n A 1 112 SER 112 165 165 SER SER A . n A 1 113 ASP 113 166 166 ASP ASP A . n A 1 114 TYR 114 167 167 TYR TYR A . n A 1 115 LEU 115 168 168 LEU LEU A . n A 1 116 ASP 116 169 169 ASP ASP A . n A 1 117 LYS 117 170 170 LYS LYS A . n A 1 118 LYS 118 171 171 LYS LYS A . n A 1 119 THR 119 172 172 THR THR A . n A 1 120 GLY 120 173 173 GLY GLY A . n A 1 121 TYR 121 174 174 TYR TYR A . n A 1 122 THR 122 175 175 THR THR A . n A 1 123 THR 123 176 176 THR THR A . n A 1 124 VAL 124 177 177 VAL VAL A . n A 1 125 ASN 125 178 178 ASN ASN A . n A 1 126 MET 126 179 179 MET MET A . n A 1 127 MET 127 180 180 MET MET A . n A 1 128 ALA 128 181 181 ALA ALA A . n A 1 129 ILE 129 182 182 ILE ILE A . n A 1 130 PRO 130 183 183 PRO PRO A . n A 1 131 ILE 131 184 184 ILE ILE A . n A 1 132 THR 132 185 185 THR THR A . n A 1 133 GLN 133 186 186 GLN GLN A . n A 1 134 GLY 134 187 187 GLY GLY A . n A 1 135 LYS 135 188 188 LYS LYS A . n A 1 136 GLU 136 189 189 GLU GLU A . n A 1 137 VAL 137 190 190 VAL VAL A . n A 1 138 LEU 138 191 191 LEU LEU A . n A 1 139 ALA 139 192 192 ALA ALA A . n A 1 140 VAL 140 193 193 VAL VAL A . n A 1 141 VAL 141 194 194 VAL VAL A . n A 1 142 MET 142 195 195 MET MET A . n A 1 143 ALA 143 196 196 ALA ALA A . n A 1 144 LEU 144 197 197 LEU LEU A . n A 1 145 ASN 145 198 198 ASN ASN A . n A 1 146 LYS 146 199 199 LYS LYS A . n A 1 147 LEU 147 200 200 LEU LEU A . n A 1 148 ASN 148 201 201 ASN ASN A . n A 1 149 ALA 149 202 202 ALA ALA A . n A 1 150 SER 150 203 203 SER SER A . n A 1 151 GLU 151 204 204 GLU GLU A . n A 1 152 PHE 152 205 205 PHE PHE A . n A 1 153 SER 153 206 206 SER SER A . n A 1 154 LYS 154 207 207 LYS LYS A . n A 1 155 GLU 155 208 208 GLU GLU A . n A 1 156 ASP 156 209 209 ASP ASP A . n A 1 157 GLU 157 210 210 GLU GLU A . n A 1 158 GLU 158 211 211 GLU GLU A . n A 1 159 VAL 159 212 212 VAL VAL A . n A 1 160 PHE 160 213 213 PHE PHE A . n A 1 161 LYS 161 214 214 LYS LYS A . n A 1 162 LYS 162 215 215 LYS LYS A . n A 1 163 TYR 163 216 216 TYR TYR A . n A 1 164 LEU 164 217 217 LEU LEU A . n A 1 165 ASN 165 218 218 ASN ASN A . n A 1 166 PHE 166 219 219 PHE PHE A . n A 1 167 ILE 167 220 220 ILE ILE A . n A 1 168 SER 168 221 221 SER SER A . n A 1 169 LEU 169 222 222 LEU LEU A . n A 1 170 VAL 170 223 223 VAL VAL A . n A 1 171 LEU 171 224 224 LEU LEU A . n A 1 172 ARG 172 225 225 ARG ARG A . n A 1 173 LEU 173 226 ? ? ? A . n A 1 174 GLU 174 227 ? ? ? A . n A 1 175 HIS 175 228 ? ? ? A . n A 1 176 HIS 176 229 ? ? ? A . n A 1 177 HIS 177 230 ? ? ? A . n A 1 178 HIS 178 231 ? ? ? A . n A 1 179 HIS 179 232 ? ? ? A . n A 1 180 HIS 180 233 ? ? ? A . n B 1 1 MET 1 54 ? ? ? B . n B 1 2 ARG 2 55 55 ARG ARG B . n B 1 3 LEU 3 56 56 LEU LEU B . n B 1 4 GLU 4 57 57 GLU GLU B . n B 1 5 GLU 5 58 58 GLU GLU B . n B 1 6 CYS 6 59 59 CYS CYS B . n B 1 7 ASN 7 60 60 ASN ASN B . n B 1 8 ILE 8 61 61 ILE ILE B . n B 1 9 LEU 9 62 62 LEU LEU B . n B 1 10 PHE 10 63 63 PHE PHE B . n B 1 11 GLU 11 64 64 GLU GLU B . n B 1 12 LEU 12 65 65 LEU LEU B . n B 1 13 LEU 13 66 66 LEU LEU B . n B 1 14 THR 14 67 67 THR THR B . n B 1 15 GLU 15 68 68 GLU GLU B . n B 1 16 ILE 16 69 69 ILE ILE B . n B 1 17 GLN 17 70 70 GLN GLN B . n B 1 18 ASP 18 71 71 ASP ASP B . n B 1 19 GLU 19 72 72 GLU GLU B . n B 1 20 ALA 20 73 73 ALA ALA B . n B 1 21 GLY 21 74 74 GLY GLY B . n B 1 22 SER 22 75 75 SER SER B . n B 1 23 MET 23 76 76 MET MET B . n B 1 24 GLU 24 77 77 GLU GLU B . n B 1 25 LYS 25 78 78 LYS LYS B . n B 1 26 ILE 26 79 79 ILE ILE B . n B 1 27 VAL 27 80 80 VAL VAL B . n B 1 28 HIS 28 81 81 HIS HIS B . n B 1 29 LYS 29 82 82 LYS LYS B . n B 1 30 THR 30 83 83 THR THR B . n B 1 31 LEU 31 84 84 LEU LEU B . n B 1 32 GLN 32 85 85 GLN GLN B . n B 1 33 ARG 33 86 86 ARG ARG B . n B 1 34 LEU 34 87 87 LEU LEU B . n B 1 35 SER 35 88 88 SER SER B . n B 1 36 GLN 36 89 89 GLN GLN B . n B 1 37 LEU 37 90 90 LEU LEU B . n B 1 38 LEU 38 91 91 LEU LEU B . n B 1 39 ALA 39 92 92 ALA ALA B . n B 1 40 ALA 40 93 93 ALA ALA B . n B 1 41 ASP 41 94 94 ASP ASP B . n B 1 42 ARG 42 95 95 ARG ARG B . n B 1 43 CYS 43 96 96 CYS CYS B . n B 1 44 SER 44 97 97 SER SER B . n B 1 45 MET 45 98 98 MET MET B . n B 1 46 PHE 46 99 99 PHE PHE B . n B 1 47 ILE 47 100 100 ILE ILE B . n B 1 48 CYS 48 101 101 CYS CYS B . n B 1 49 ARG 49 102 102 ARG ARG B . n B 1 50 SER 50 103 103 SER SER B . n B 1 51 ARG 51 104 104 ARG ARG B . n B 1 52 ASN 52 105 105 ASN ASN B . n B 1 53 GLY 53 106 106 GLY GLY B . n B 1 54 ILE 54 107 107 ILE ILE B . n B 1 55 PRO 55 108 108 PRO PRO B . n B 1 56 GLU 56 109 109 GLU GLU B . n B 1 57 VAL 57 110 110 VAL VAL B . n B 1 58 ALA 58 111 111 ALA ALA B . n B 1 59 THR 59 112 112 THR THR B . n B 1 60 ARG 60 113 113 ARG ARG B . n B 1 61 LEU 61 114 114 LEU LEU B . n B 1 62 LEU 62 115 115 LEU LEU B . n B 1 63 ASN 63 116 116 ASN ASN B . n B 1 64 VAL 64 117 117 VAL VAL B . n B 1 65 THR 65 118 118 THR THR B . n B 1 66 PRO 66 119 119 PRO PRO B . n B 1 67 THR 67 120 120 THR THR B . n B 1 68 SER 68 121 121 SER SER B . n B 1 69 LYS 69 122 122 LYS LYS B . n B 1 70 PHE 70 123 123 PHE PHE B . n B 1 71 GLU 71 124 124 GLU GLU B . n B 1 72 ASP 72 125 125 ASP ASP B . n B 1 73 ASN 73 126 126 ASN ASN B . n B 1 74 LEU 74 127 127 LEU LEU B . n B 1 75 VAL 75 128 128 VAL VAL B . n B 1 76 ASN 76 129 129 ASN ASN B . n B 1 77 PRO 77 130 130 PRO PRO B . n B 1 78 ASP 78 131 131 ASP ASP B . n B 1 79 LYS 79 132 132 LYS LYS B . n B 1 80 GLU 80 133 133 GLU GLU B . n B 1 81 THR 81 134 134 THR THR B . n B 1 82 VAL 82 135 135 VAL VAL B . n B 1 83 PHE 83 136 136 PHE PHE B . n B 1 84 PRO 84 137 137 PRO PRO B . n B 1 85 LEU 85 138 138 LEU LEU B . n B 1 86 ASP 86 139 139 ASP ASP B . n B 1 87 ILE 87 140 140 ILE ILE B . n B 1 88 GLY 88 141 141 GLY GLY B . n B 1 89 ILE 89 142 142 ILE ILE B . n B 1 90 ALA 90 143 143 ALA ALA B . n B 1 91 GLY 91 144 144 GLY GLY B . n B 1 92 TRP 92 145 145 TRP TRP B . n B 1 93 VAL 93 146 146 VAL VAL B . n B 1 94 ALA 94 147 147 ALA ALA B . n B 1 95 HIS 95 148 148 HIS HIS B . n B 1 96 THR 96 149 149 THR THR B . n B 1 97 LYS 97 150 150 LYS LYS B . n B 1 98 LYS 98 151 151 LYS LYS B . n B 1 99 PHE 99 152 152 PHE PHE B . n B 1 100 PHE 100 153 153 PHE PHE B . n B 1 101 ASN 101 154 154 ASN ASN B . n B 1 102 ILE 102 155 155 ILE ILE B . n B 1 103 PRO 103 156 156 PRO PRO B . n B 1 104 ASP 104 157 157 ASP ASP B . n B 1 105 VAL 105 158 158 VAL VAL B . n B 1 106 LYS 106 159 159 LYS LYS B . n B 1 107 LYS 107 160 160 LYS LYS B . n B 1 108 ASN 108 161 161 ASN ASN B . n B 1 109 ASN 109 162 162 ASN ASN B . n B 1 110 HIS 110 163 163 HIS HIS B . n B 1 111 PHE 111 164 164 PHE PHE B . n B 1 112 SER 112 165 165 SER SER B . n B 1 113 ASP 113 166 166 ASP ASP B . n B 1 114 TYR 114 167 167 TYR TYR B . n B 1 115 LEU 115 168 168 LEU LEU B . n B 1 116 ASP 116 169 169 ASP ASP B . n B 1 117 LYS 117 170 170 LYS LYS B . n B 1 118 LYS 118 171 171 LYS LYS B . n B 1 119 THR 119 172 172 THR THR B . n B 1 120 GLY 120 173 173 GLY GLY B . n B 1 121 TYR 121 174 174 TYR TYR B . n B 1 122 THR 122 175 175 THR THR B . n B 1 123 THR 123 176 176 THR THR B . n B 1 124 VAL 124 177 177 VAL VAL B . n B 1 125 ASN 125 178 178 ASN ASN B . n B 1 126 MET 126 179 179 MET MET B . n B 1 127 MET 127 180 180 MET MET B . n B 1 128 ALA 128 181 181 ALA ALA B . n B 1 129 ILE 129 182 182 ILE ILE B . n B 1 130 PRO 130 183 183 PRO PRO B . n B 1 131 ILE 131 184 184 ILE ILE B . n B 1 132 THR 132 185 185 THR THR B . n B 1 133 GLN 133 186 186 GLN GLN B . n B 1 134 GLY 134 187 187 GLY GLY B . n B 1 135 LYS 135 188 188 LYS LYS B . n B 1 136 GLU 136 189 189 GLU GLU B . n B 1 137 VAL 137 190 190 VAL VAL B . n B 1 138 LEU 138 191 191 LEU LEU B . n B 1 139 ALA 139 192 192 ALA ALA B . n B 1 140 VAL 140 193 193 VAL VAL B . n B 1 141 VAL 141 194 194 VAL VAL B . n B 1 142 MET 142 195 195 MET MET B . n B 1 143 ALA 143 196 196 ALA ALA B . n B 1 144 LEU 144 197 197 LEU LEU B . n B 1 145 ASN 145 198 198 ASN ASN B . n B 1 146 LYS 146 199 199 LYS LYS B . n B 1 147 LEU 147 200 200 LEU LEU B . n B 1 148 ASN 148 201 201 ASN ASN B . n B 1 149 ALA 149 202 202 ALA ALA B . n B 1 150 SER 150 203 203 SER SER B . n B 1 151 GLU 151 204 204 GLU GLU B . n B 1 152 PHE 152 205 205 PHE PHE B . n B 1 153 SER 153 206 206 SER SER B . n B 1 154 LYS 154 207 207 LYS LYS B . n B 1 155 GLU 155 208 208 GLU GLU B . n B 1 156 ASP 156 209 209 ASP ASP B . n B 1 157 GLU 157 210 210 GLU GLU B . n B 1 158 GLU 158 211 211 GLU GLU B . n B 1 159 VAL 159 212 212 VAL VAL B . n B 1 160 PHE 160 213 213 PHE PHE B . n B 1 161 LYS 161 214 214 LYS LYS B . n B 1 162 LYS 162 215 215 LYS LYS B . n B 1 163 TYR 163 216 216 TYR TYR B . n B 1 164 LEU 164 217 217 LEU LEU B . n B 1 165 ASN 165 218 218 ASN ASN B . n B 1 166 PHE 166 219 219 PHE PHE B . n B 1 167 ILE 167 220 220 ILE ILE B . n B 1 168 SER 168 221 221 SER SER B . n B 1 169 LEU 169 222 222 LEU LEU B . n B 1 170 VAL 170 223 223 VAL VAL B . n B 1 171 LEU 171 224 224 LEU LEU B . n B 1 172 ARG 172 225 225 ARG ARG B . n B 1 173 LEU 173 226 ? ? ? B . n B 1 174 GLU 174 227 ? ? ? B . n B 1 175 HIS 175 228 ? ? ? B . n B 1 176 HIS 176 229 ? ? ? B . n B 1 177 HIS 177 230 ? ? ? B . n B 1 178 HIS 178 231 ? ? ? B . n B 1 179 HIS 179 232 ? ? ? B . n B 1 180 HIS 180 233 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 35G 1 1 1 35G 35G A . D 3 GOL 1 3 3 GOL GOL A . E 3 GOL 1 4 4 GOL GOL A . F 3 GOL 1 5 5 GOL GOL A . G 2 35G 1 2 2 35G 35G B . H 3 GOL 1 6 6 GOL GOL B . I 3 GOL 1 7 7 GOL GOL B . J 4 HOH 1 243 243 HOH HOH A . J 4 HOH 2 244 244 HOH HOH A . J 4 HOH 3 245 245 HOH HOH A . J 4 HOH 4 246 246 HOH HOH A . J 4 HOH 5 247 247 HOH HOH A . J 4 HOH 6 248 248 HOH HOH A . J 4 HOH 7 249 249 HOH HOH A . J 4 HOH 8 250 250 HOH HOH A . J 4 HOH 9 251 251 HOH HOH A . J 4 HOH 10 252 252 HOH HOH A . J 4 HOH 11 253 253 HOH HOH A . J 4 HOH 12 254 254 HOH HOH A . J 4 HOH 13 255 255 HOH HOH A . J 4 HOH 14 256 256 HOH HOH A . J 4 HOH 15 257 257 HOH HOH A . J 4 HOH 16 258 258 HOH HOH A . J 4 HOH 17 259 259 HOH HOH A . J 4 HOH 18 260 260 HOH HOH A . J 4 HOH 19 261 261 HOH HOH A . J 4 HOH 20 262 262 HOH HOH A . J 4 HOH 21 263 263 HOH HOH A . J 4 HOH 22 264 264 HOH HOH A . J 4 HOH 23 265 265 HOH HOH A . J 4 HOH 24 266 266 HOH HOH A . J 4 HOH 25 267 267 HOH HOH A . J 4 HOH 26 268 268 HOH HOH A . J 4 HOH 27 269 269 HOH HOH A . J 4 HOH 28 270 270 HOH HOH A . J 4 HOH 29 271 271 HOH HOH A . J 4 HOH 30 272 272 HOH HOH A . J 4 HOH 31 273 273 HOH HOH A . J 4 HOH 32 274 274 HOH HOH A . J 4 HOH 33 275 275 HOH HOH A . J 4 HOH 34 276 276 HOH HOH A . J 4 HOH 35 277 277 HOH HOH A . J 4 HOH 36 278 278 HOH HOH A . J 4 HOH 37 279 279 HOH HOH A . J 4 HOH 38 280 280 HOH HOH A . J 4 HOH 39 281 281 HOH HOH A . J 4 HOH 40 282 282 HOH HOH A . J 4 HOH 41 283 283 HOH HOH A . J 4 HOH 42 284 284 HOH HOH A . J 4 HOH 43 285 285 HOH HOH A . J 4 HOH 44 286 286 HOH HOH A . J 4 HOH 45 287 287 HOH HOH A . K 4 HOH 1 243 243 HOH HOH B . K 4 HOH 2 244 244 HOH HOH B . K 4 HOH 3 245 245 HOH HOH B . K 4 HOH 4 246 246 HOH HOH B . K 4 HOH 5 247 247 HOH HOH B . K 4 HOH 6 248 248 HOH HOH B . K 4 HOH 7 249 249 HOH HOH B . K 4 HOH 8 250 250 HOH HOH B . K 4 HOH 9 251 251 HOH HOH B . K 4 HOH 10 252 252 HOH HOH B . K 4 HOH 11 253 253 HOH HOH B . K 4 HOH 12 254 254 HOH HOH B . K 4 HOH 13 255 255 HOH HOH B . K 4 HOH 14 256 256 HOH HOH B . K 4 HOH 15 257 257 HOH HOH B . K 4 HOH 16 258 258 HOH HOH B . K 4 HOH 17 259 259 HOH HOH B . K 4 HOH 18 260 260 HOH HOH B . K 4 HOH 19 261 261 HOH HOH B . K 4 HOH 20 262 262 HOH HOH B . K 4 HOH 21 263 263 HOH HOH B . K 4 HOH 22 264 264 HOH HOH B . K 4 HOH 23 265 265 HOH HOH B . K 4 HOH 24 266 266 HOH HOH B . K 4 HOH 25 267 267 HOH HOH B . K 4 HOH 26 268 268 HOH HOH B . K 4 HOH 27 269 269 HOH HOH B . K 4 HOH 28 270 270 HOH HOH B . K 4 HOH 29 271 271 HOH HOH B . K 4 HOH 30 272 272 HOH HOH B . K 4 HOH 31 273 273 HOH HOH B . K 4 HOH 32 274 274 HOH HOH B . K 4 HOH 33 275 275 HOH HOH B . K 4 HOH 34 276 276 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 ADSC 'data collection' Quantum ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 SOLVE phasing . ? 5 # _cell.entry_id 3DBA _cell.length_a 67.598 _cell.length_b 67.598 _cell.length_c 198.533 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DBA _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DBA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.99 _exptl_crystal.density_percent_sol 58.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pdbx_details '1.5 M ammonium sulfate, 0.1 M sodium acetate, pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4r' _diffrn_detector.pdbx_collection_date 2006-08-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'KOHZU double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97912 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97912 # _reflns.entry_id 3DBA _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -3.0 _reflns.d_resolution_high 2.57 _reflns.d_resolution_low 43.85 _reflns.number_all 17389 _reflns.number_obs 17389 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.074 _reflns.pdbx_netI_over_sigmaI 51.8 _reflns.B_iso_Wilson_estimate 57 _reflns.pdbx_redundancy 10.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.57 _reflns_shell.d_res_low 2.66 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 56.5 _reflns_shell.meanI_over_sigI_obs 4.8 _reflns_shell.pdbx_redundancy 9.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1715 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DBA _refine.ls_number_reflns_obs 17159 _refine.ls_number_reflns_all 17389 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.85 _refine.ls_d_res_high 2.57 _refine.ls_percent_reflns_obs 98.15 _refine.ls_R_factor_obs .22245 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work .22063 _refine.ls_R_factor_R_free .25705 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 860 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc .951 _refine.correlation_coeff_Fo_to_Fc_free .936 _refine.B_iso_mean 68.876 _refine.aniso_B[1][1] 7.33 _refine.aniso_B[2][2] 7.33 _refine.aniso_B[3][3] -11.00 _refine.aniso_B[1][2] 3.67 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii .80 _refine.pdbx_solvent_shrinkage_radii .80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R .454 _refine.pdbx_overall_ESU_R_Free .285 _refine.overall_SU_ML .282 _refine.overall_SU_B 28.428 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2736 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 76 _refine_hist.number_atoms_solvent 79 _refine_hist.number_atoms_total 2891 _refine_hist.d_res_high 2.57 _refine_hist.d_res_low 43.85 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d .009 .022 ? 2861 'X-RAY DIFFRACTION' ? r_bond_other_d .001 .020 ? 1958 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.259 2.001 ? 3865 'X-RAY DIFFRACTION' ? r_angle_other_deg .813 3.000 ? 4806 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.946 5.000 ? 340 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.161 25.079 ? 126 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.936 15.000 ? 532 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.664 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr .069 .200 ? 446 'X-RAY DIFFRACTION' ? r_gen_planes_refined .003 .020 ? 3054 'X-RAY DIFFRACTION' ? r_gen_planes_other .001 .020 ? 542 'X-RAY DIFFRACTION' ? r_nbd_refined .216 .200 ? 673 'X-RAY DIFFRACTION' ? r_nbd_other .181 .200 ? 1948 'X-RAY DIFFRACTION' ? r_nbtor_refined .179 .200 ? 1368 'X-RAY DIFFRACTION' ? r_nbtor_other .083 .200 ? 1568 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined .154 .200 ? 104 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined .260 .200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other .244 .200 ? 54 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined .226 .200 ? 6 'X-RAY DIFFRACTION' ? r_mcbond_it 3.075 7.000 ? 2218 'X-RAY DIFFRACTION' ? r_mcbond_other .768 7.000 ? 682 'X-RAY DIFFRACTION' ? r_mcangle_it 3.907 10.000 ? 2784 'X-RAY DIFFRACTION' ? r_scbond_it 2.752 7.000 ? 1345 'X-RAY DIFFRACTION' ? r_scangle_it 3.623 10.000 ? 1081 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.572 _refine_ls_shell.d_res_low 2.639 _refine_ls_shell.number_reflns_R_work 1170 _refine_ls_shell.R_factor_R_work .354 _refine_ls_shell.percent_reflns_obs 98.88 _refine_ls_shell.R_factor_R_free .331 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3DBA _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3DBA _struct.title 'Crystal structure of the cGMP-bound GAF a domain from the photoreceptor phosphodiesterase 6C' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DBA _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;3', 5' cGMP, GAF domain, cyclic nucleotide phosphodiesterase, cGMP, Hydrolase, Lipoprotein, Membrane, Prenylation, Sensory transduction, Vision ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDE6C_CHICK _struct_ref.pdbx_db_accession P52731 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLARDRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKET VFPLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVFK KYLNFISLVLR ; _struct_ref.pdbx_align_begin 55 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DBA A 2 ? 172 ? P52731 55 ? 225 ? 55 225 2 1 3DBA B 2 ? 172 ? P52731 55 ? 225 ? 55 225 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DBA MET A 1 ? UNP P52731 ? ? 'expression tag' 54 1 1 3DBA ALA A 40 ? UNP P52731 ARG 93 'SEE REMARK 999' 93 2 1 3DBA LEU A 173 ? UNP P52731 ? ? 'expression tag' 226 3 1 3DBA GLU A 174 ? UNP P52731 ? ? 'expression tag' 227 4 1 3DBA HIS A 175 ? UNP P52731 ? ? 'expression tag' 228 5 1 3DBA HIS A 176 ? UNP P52731 ? ? 'expression tag' 229 6 1 3DBA HIS A 177 ? UNP P52731 ? ? 'expression tag' 230 7 1 3DBA HIS A 178 ? UNP P52731 ? ? 'expression tag' 231 8 1 3DBA HIS A 179 ? UNP P52731 ? ? 'expression tag' 232 9 1 3DBA HIS A 180 ? UNP P52731 ? ? 'expression tag' 233 10 2 3DBA MET B 1 ? UNP P52731 ? ? 'expression tag' 54 11 2 3DBA ALA B 40 ? UNP P52731 ARG 93 'SEE REMARK 999' 93 12 2 3DBA LEU B 173 ? UNP P52731 ? ? 'expression tag' 226 13 2 3DBA GLU B 174 ? UNP P52731 ? ? 'expression tag' 227 14 2 3DBA HIS B 175 ? UNP P52731 ? ? 'expression tag' 228 15 2 3DBA HIS B 176 ? UNP P52731 ? ? 'expression tag' 229 16 2 3DBA HIS B 177 ? UNP P52731 ? ? 'expression tag' 230 17 2 3DBA HIS B 178 ? UNP P52731 ? ? 'expression tag' 231 18 2 3DBA HIS B 179 ? UNP P52731 ? ? 'expression tag' 232 19 2 3DBA HIS B 180 ? UNP P52731 ? ? 'expression tag' 233 20 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 12270 ? 1 MORE -43 ? 1 'SSA (A^2)' 30570 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I,J,K 2 1 A,C,D,E,F,J 3 1 B,G,H,I,K # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? THR A 14 ? ARG A 55 THR A 67 1 ? 13 HELX_P HELX_P2 2 GLY A 21 ? ALA A 39 ? GLY A 74 ALA A 92 1 ? 19 HELX_P HELX_P3 3 LYS A 69 ? LEU A 74 ? LYS A 122 LEU A 127 1 ? 6 HELX_P HELX_P4 5 GLY A 88 ? LYS A 97 ? GLY A 141 LYS A 150 1 ? 10 HELX_P HELX_P5 7 ASP A 113 ? GLY A 120 ? ASP A 166 GLY A 173 1 ? 8 HELX_P HELX_P6 8 SER A 153 ? LEU A 171 ? SER A 206 LEU A 224 1 ? 19 HELX_P HELX_P7 9 GLU B 4 ? GLU B 15 ? GLU B 57 GLU B 68 1 ? 12 HELX_P HELX_P8 10 MET B 23 ? ALA B 39 ? MET B 76 ALA B 92 1 ? 17 HELX_P HELX_P9 11 LYS B 69 ? LEU B 74 ? LYS B 122 LEU B 127 1 ? 6 HELX_P HELX_P10 13 GLY B 88 ? LYS B 97 ? GLY B 141 LYS B 150 1 ? 10 HELX_P HELX_P11 14 ASP B 113 ? GLY B 120 ? ASP B 166 GLY B 173 1 ? 8 HELX_P HELX_P12 15 SER B 153 ? LEU B 171 ? SER B 206 LEU B 224 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 20 A . ? ALA 73 A GLY 21 A ? GLY 74 A 1 6.51 2 ARG 51 B . ? ARG 104 B ASN 52 B ? ASN 105 B 1 -8.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 81 ? PHE A 83 ? THR A 134 PHE A 136 A 2 ILE A 54 ? VAL A 64 ? ILE A 107 VAL A 117 A 3 ALA A 39 ? ARG A 51 ? ALA A 92 ARG A 104 A 4 GLU A 136 ? LYS A 146 ? GLU A 189 LYS A 199 A 5 ASN A 125 ? GLN A 133 ? ASN A 178 GLN A 186 A 6 PHE A 100 ? ILE A 102 ? PHE A 153 ILE A 155 B 1 THR B 81 ? PHE B 83 ? THR B 134 PHE B 136 B 2 PRO B 55 ? VAL B 64 ? PRO B 108 VAL B 117 B 3 ALA B 39 ? ARG B 51 ? ALA B 92 ARG B 104 B 4 GLU B 136 ? LYS B 146 ? GLU B 189 LYS B 199 B 5 ASN B 125 ? GLN B 133 ? ASN B 178 GLN B 186 B 6 PHE B 100 ? ILE B 102 ? PHE B 153 ILE B 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 83 ? O PHE A 136 N VAL A 57 ? N VAL A 110 A 2 3 O VAL A 64 ? O VAL A 117 N CYS A 43 ? N CYS A 96 A 3 4 O ARG A 42 ? O ARG A 95 N LEU A 144 ? N LEU A 197 A 4 5 O GLU A 136 ? O GLU A 189 N GLN A 133 ? N GLN A 186 A 5 6 O MET A 126 ? O MET A 179 N ILE A 102 ? N ILE A 155 B 1 2 O PHE B 83 ? O PHE B 136 N VAL B 57 ? N VAL B 110 B 2 3 O VAL B 64 ? O VAL B 117 N CYS B 43 ? N CYS B 96 B 3 4 N PHE B 46 ? N PHE B 99 O VAL B 140 ? O VAL B 193 B 4 5 O ALA B 139 ? O ALA B 192 N ILE B 131 ? N ILE B 184 B 5 6 O MET B 126 ? O MET B 179 N ILE B 102 ? N ILE B 155 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 35G 1 ? 16 'BINDING SITE FOR RESIDUE 35G A 1' AC2 Software B 35G 2 ? 18 'BINDING SITE FOR RESIDUE 35G B 2' AC3 Software A GOL 3 ? 2 'BINDING SITE FOR RESIDUE GOL A 3' AC4 Software A GOL 4 ? 4 'BINDING SITE FOR RESIDUE GOL A 4' AC5 Software A GOL 5 ? 4 'BINDING SITE FOR RESIDUE GOL A 5' AC6 Software B GOL 7 ? 3 'BINDING SITE FOR RESIDUE GOL B 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 SER A 44 ? SER A 97 . ? 1_555 ? 2 AC1 16 PHE A 46 ? PHE A 99 . ? 1_555 ? 3 AC1 16 LEU A 62 ? LEU A 115 . ? 1_555 ? 4 AC1 16 ASN A 63 ? ASN A 116 . ? 1_555 ? 5 AC1 16 GLY A 88 ? GLY A 141 . ? 1_555 ? 6 AC1 16 ILE A 89 ? ILE A 142 . ? 1_555 ? 7 AC1 16 ALA A 90 ? ALA A 143 . ? 1_555 ? 8 AC1 16 PHE A 111 ? PHE A 164 . ? 1_555 ? 9 AC1 16 SER A 112 ? SER A 165 . ? 1_555 ? 10 AC1 16 LEU A 115 ? LEU A 168 . ? 1_555 ? 11 AC1 16 ASP A 116 ? ASP A 169 . ? 1_555 ? 12 AC1 16 THR A 119 ? THR A 172 . ? 1_555 ? 13 AC1 16 TYR A 121 ? TYR A 174 . ? 1_555 ? 14 AC1 16 THR A 123 ? THR A 176 . ? 1_555 ? 15 AC1 16 LEU A 144 ? LEU A 197 . ? 1_555 ? 16 AC1 16 HOH J . ? HOH A 254 . ? 1_555 ? 17 AC2 18 SER B 44 ? SER B 97 . ? 1_555 ? 18 AC2 18 PHE B 46 ? PHE B 99 . ? 1_555 ? 19 AC2 18 LEU B 62 ? LEU B 115 . ? 1_555 ? 20 AC2 18 ASN B 63 ? ASN B 116 . ? 1_555 ? 21 AC2 18 PHE B 83 ? PHE B 136 . ? 1_555 ? 22 AC2 18 GLY B 88 ? GLY B 141 . ? 1_555 ? 23 AC2 18 ILE B 89 ? ILE B 142 . ? 1_555 ? 24 AC2 18 ALA B 90 ? ALA B 143 . ? 1_555 ? 25 AC2 18 PHE B 111 ? PHE B 164 . ? 1_555 ? 26 AC2 18 SER B 112 ? SER B 165 . ? 1_555 ? 27 AC2 18 LEU B 115 ? LEU B 168 . ? 1_555 ? 28 AC2 18 TYR B 121 ? TYR B 174 . ? 1_555 ? 29 AC2 18 THR B 123 ? THR B 176 . ? 1_555 ? 30 AC2 18 MET B 126 ? MET B 179 . ? 1_555 ? 31 AC2 18 LEU B 144 ? LEU B 197 . ? 1_555 ? 32 AC2 18 HOH K . ? HOH B 246 . ? 1_555 ? 33 AC2 18 HOH K . ? HOH B 248 . ? 1_555 ? 34 AC2 18 HOH K . ? HOH B 276 . ? 1_555 ? 35 AC3 2 TYR A 114 ? TYR A 167 . ? 1_555 ? 36 AC3 2 HOH J . ? HOH A 275 . ? 1_555 ? 37 AC4 4 TRP A 92 ? TRP A 145 . ? 1_555 ? 38 AC4 4 LYS A 98 ? LYS A 151 . ? 1_555 ? 39 AC4 4 PHE A 100 ? PHE A 153 . ? 1_555 ? 40 AC4 4 HIS A 110 ? HIS A 163 . ? 1_555 ? 41 AC5 4 HIS A 28 ? HIS A 81 . ? 1_555 ? 42 AC5 4 LYS A 29 ? LYS A 82 . ? 1_555 ? 43 AC5 4 GLN A 32 ? GLN A 85 . ? 1_555 ? 44 AC5 4 PHE A 70 ? PHE A 123 . ? 1_555 ? 45 AC6 3 HIS B 28 ? HIS B 81 . ? 1_555 ? 46 AC6 3 GLN B 32 ? GLN B 85 . ? 1_555 ? 47 AC6 3 PHE B 70 ? PHE B 123 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 56 ? ? -28.73 -76.83 2 1 ASP A 71 ? ? -55.79 84.11 3 1 GLU A 72 ? ? -150.04 -81.65 4 1 ALA A 73 ? ? -78.45 -129.95 5 1 ARG A 113 ? ? -146.50 -59.58 6 1 HIS A 163 ? ? 92.17 -44.89 7 1 ASN A 198 ? ? 51.48 84.48 8 1 ALA A 202 ? ? 178.55 161.53 9 1 LEU A 224 ? ? -73.74 42.36 10 1 SER B 75 ? ? 54.35 91.95 11 1 ARG B 113 ? ? -140.94 -55.54 12 1 PRO B 130 ? ? -55.08 -9.61 13 1 LYS B 132 ? ? -161.33 64.62 14 1 ASP B 157 ? ? -166.97 94.29 15 1 LYS B 159 ? ? 80.82 -26.96 16 1 VAL B 177 ? ? -120.87 -53.91 17 1 MET B 179 ? ? -171.15 128.40 18 1 ASN B 198 ? ? 55.10 85.33 19 1 LEU B 224 ? ? -82.51 49.40 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 14.5166 38.6205 15.6737 -.1307 -.4125 -.1399 -.2421 -.0137 .0515 2.4754 2.6078 8.7551 -1.1617 -1.5658 1.0191 -.0115 .0375 -.0347 .1716 .0040 .3088 -.1444 -.7290 .0075 'X-RAY DIFFRACTION' 2 ? refined 38.8247 17.1889 14.8022 .3573 -.1842 -.1241 .0284 -.0558 .0209 4.3089 5.7070 7.8351 -1.4756 2.4084 .2128 .5301 .8492 -.0519 -.9781 -.2802 -.2950 1.2436 .9836 -.2500 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 55 A 2 A 225 A 172 ? 'X-RAY DIFFRACTION' ? 2 2 B 55 B 2 B 225 B 172 ? 'X-RAY DIFFRACTION' ? # _pdbx_entry_details.entry_id 3DBA _pdbx_entry_details.sequence_details ;ACCORDING TO THE AUTHORS SEQUENCING OF THE EXPRESSION PLASMID REVEALED AN APPARENT MUTATION R93A, WITH REFERENCE TO THE MRNA SEQUENCE IN ENTREZ ENTRY NM_204986. HOWEVER, A CHICKEN GENOMIC CONTIG ENTREZ NW_001471719 SHOWS AN ALA CODON GCC INSTEAD OF THE ARG CODON CGC. NEARLY ALL PDE6 SEQUENCES HAVE AN ALA AT THIS POSITION. IN THE MODEL, THIS ALA IS COMPLETELY BURIED IN A PACKED HYDROPHOBIC ENVIRONMENT. THEREFORE, THE ENTREZ MRNA ENTRY LIKELY HAS A TRANSPOSITION ERROR OF THE FIRST TWO BASES IN THIS CODON. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 54 ? A MET 1 2 1 Y 1 A LEU 226 ? A LEU 173 3 1 Y 1 A GLU 227 ? A GLU 174 4 1 Y 1 A HIS 228 ? A HIS 175 5 1 Y 1 A HIS 229 ? A HIS 176 6 1 Y 1 A HIS 230 ? A HIS 177 7 1 Y 1 A HIS 231 ? A HIS 178 8 1 Y 1 A HIS 232 ? A HIS 179 9 1 Y 1 A HIS 233 ? A HIS 180 10 1 Y 1 B MET 54 ? B MET 1 11 1 Y 1 B LEU 226 ? B LEU 173 12 1 Y 1 B GLU 227 ? B GLU 174 13 1 Y 1 B HIS 228 ? B HIS 175 14 1 Y 1 B HIS 229 ? B HIS 176 15 1 Y 1 B HIS 230 ? B HIS 177 16 1 Y 1 B HIS 231 ? B HIS 178 17 1 Y 1 B HIS 232 ? B HIS 179 18 1 Y 1 B HIS 233 ? B HIS 180 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 35G P P N N 1 35G O1P O N N 2 35G O2P O N N 3 35G "O5'" O N N 4 35G "C5'" C N N 5 35G "C4'" C N R 6 35G "O4'" O N N 7 35G "C3'" C N S 8 35G "O3'" O N N 9 35G "C2'" C N R 10 35G "O2'" O N N 11 35G "C1'" C N R 12 35G N9 N Y N 13 35G C8 C Y N 14 35G N7 N Y N 15 35G C5 C Y N 16 35G C6 C N N 17 35G O6 O N N 18 35G N1 N N N 19 35G C2 C N N 20 35G N2 N N N 21 35G N3 N N N 22 35G C4 C Y N 23 35G HOP2 H N N 24 35G "H5'1" H N N 25 35G "H5'2" H N N 26 35G "H4'" H N N 27 35G "H3'" H N N 28 35G "H2'" H N N 29 35G "HO2'" H N N 30 35G "H1'" H N N 31 35G H8 H N N 32 35G HN1 H N N 33 35G HN21 H N N 34 35G HN22 H N N 35 ALA N N N N 36 ALA CA C N S 37 ALA C C N N 38 ALA O O N N 39 ALA CB C N N 40 ALA OXT O N N 41 ALA H H N N 42 ALA H2 H N N 43 ALA HA H N N 44 ALA HB1 H N N 45 ALA HB2 H N N 46 ALA HB3 H N N 47 ALA HXT H N N 48 ARG N N N N 49 ARG CA C N S 50 ARG C C N N 51 ARG O O N N 52 ARG CB C N N 53 ARG CG C N N 54 ARG CD C N N 55 ARG NE N N N 56 ARG CZ C N N 57 ARG NH1 N N N 58 ARG NH2 N N N 59 ARG OXT O N N 60 ARG H H N N 61 ARG H2 H N N 62 ARG HA H N N 63 ARG HB2 H N N 64 ARG HB3 H N N 65 ARG HG2 H N N 66 ARG HG3 H N N 67 ARG HD2 H N N 68 ARG HD3 H N N 69 ARG HE H N N 70 ARG HH11 H N N 71 ARG HH12 H N N 72 ARG HH21 H N N 73 ARG HH22 H N N 74 ARG HXT H N N 75 ASN N N N N 76 ASN CA C N S 77 ASN C C N N 78 ASN O O N N 79 ASN CB C N N 80 ASN CG C N N 81 ASN OD1 O N N 82 ASN ND2 N N N 83 ASN OXT O N N 84 ASN H H N N 85 ASN H2 H N N 86 ASN HA H N N 87 ASN HB2 H N N 88 ASN HB3 H N N 89 ASN HD21 H N N 90 ASN HD22 H N N 91 ASN HXT H N N 92 ASP N N N N 93 ASP CA C N S 94 ASP C C N N 95 ASP O O N N 96 ASP CB C N N 97 ASP CG C N N 98 ASP OD1 O N N 99 ASP OD2 O N N 100 ASP OXT O N N 101 ASP H H N N 102 ASP H2 H N N 103 ASP HA H N N 104 ASP HB2 H N N 105 ASP HB3 H N N 106 ASP HD2 H N N 107 ASP HXT H N N 108 CYS N N N N 109 CYS CA C N R 110 CYS C C N N 111 CYS O O N N 112 CYS CB C N N 113 CYS SG S N N 114 CYS OXT O N N 115 CYS H H N N 116 CYS H2 H N N 117 CYS HA H N N 118 CYS HB2 H N N 119 CYS HB3 H N N 120 CYS HG H N N 121 CYS HXT H N N 122 GLN N N N N 123 GLN CA C N S 124 GLN C C N N 125 GLN O O N N 126 GLN CB C N N 127 GLN CG C N N 128 GLN CD C N N 129 GLN OE1 O N N 130 GLN NE2 N N N 131 GLN OXT O N N 132 GLN H H N N 133 GLN H2 H N N 134 GLN HA H N N 135 GLN HB2 H N N 136 GLN HB3 H N N 137 GLN HG2 H N N 138 GLN HG3 H N N 139 GLN HE21 H N N 140 GLN HE22 H N N 141 GLN HXT H N N 142 GLU N N N N 143 GLU CA C N S 144 GLU C C N N 145 GLU O O N N 146 GLU CB C N N 147 GLU CG C N N 148 GLU CD C N N 149 GLU OE1 O N N 150 GLU OE2 O N N 151 GLU OXT O N N 152 GLU H H N N 153 GLU H2 H N N 154 GLU HA H N N 155 GLU HB2 H N N 156 GLU HB3 H N N 157 GLU HG2 H N N 158 GLU HG3 H N N 159 GLU HE2 H N N 160 GLU HXT H N N 161 GLY N N N N 162 GLY CA C N N 163 GLY C C N N 164 GLY O O N N 165 GLY OXT O N N 166 GLY H H N N 167 GLY H2 H N N 168 GLY HA2 H N N 169 GLY HA3 H N N 170 GLY HXT H N N 171 GOL C1 C N N 172 GOL O1 O N N 173 GOL C2 C N N 174 GOL O2 O N N 175 GOL C3 C N N 176 GOL O3 O N N 177 GOL H11 H N N 178 GOL H12 H N N 179 GOL HO1 H N N 180 GOL H2 H N N 181 GOL HO2 H N N 182 GOL H31 H N N 183 GOL H32 H N N 184 GOL HO3 H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TRP N N N N 370 TRP CA C N S 371 TRP C C N N 372 TRP O O N N 373 TRP CB C N N 374 TRP CG C Y N 375 TRP CD1 C Y N 376 TRP CD2 C Y N 377 TRP NE1 N Y N 378 TRP CE2 C Y N 379 TRP CE3 C Y N 380 TRP CZ2 C Y N 381 TRP CZ3 C Y N 382 TRP CH2 C Y N 383 TRP OXT O N N 384 TRP H H N N 385 TRP H2 H N N 386 TRP HA H N N 387 TRP HB2 H N N 388 TRP HB3 H N N 389 TRP HD1 H N N 390 TRP HE1 H N N 391 TRP HE3 H N N 392 TRP HZ2 H N N 393 TRP HZ3 H N N 394 TRP HH2 H N N 395 TRP HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 35G P O1P doub N N 1 35G P O2P sing N N 2 35G P "O5'" sing N N 3 35G P "O3'" sing N N 4 35G O2P HOP2 sing N N 5 35G "O5'" "C5'" sing N N 6 35G "C5'" "C4'" sing N N 7 35G "C5'" "H5'1" sing N N 8 35G "C5'" "H5'2" sing N N 9 35G "C4'" "O4'" sing N N 10 35G "C4'" "C3'" sing N N 11 35G "C4'" "H4'" sing N N 12 35G "O4'" "C1'" sing N N 13 35G "C3'" "O3'" sing N N 14 35G "C3'" "C2'" sing N N 15 35G "C3'" "H3'" sing N N 16 35G "C2'" "O2'" sing N N 17 35G "C2'" "C1'" sing N N 18 35G "C2'" "H2'" sing N N 19 35G "O2'" "HO2'" sing N N 20 35G "C1'" N9 sing N N 21 35G "C1'" "H1'" sing N N 22 35G N9 C8 sing Y N 23 35G N9 C4 sing Y N 24 35G C8 N7 doub Y N 25 35G C8 H8 sing N N 26 35G N7 C5 sing Y N 27 35G C5 C6 sing N N 28 35G C5 C4 doub Y N 29 35G C6 O6 doub N N 30 35G C6 N1 sing N N 31 35G N1 C2 sing N N 32 35G N1 HN1 sing N N 33 35G C2 N2 sing N N 34 35G C2 N3 doub N N 35 35G N2 HN21 sing N N 36 35G N2 HN22 sing N N 37 35G N3 C4 sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 GLN N CA sing N N 121 GLN N H sing N N 122 GLN N H2 sing N N 123 GLN CA C sing N N 124 GLN CA CB sing N N 125 GLN CA HA sing N N 126 GLN C O doub N N 127 GLN C OXT sing N N 128 GLN CB CG sing N N 129 GLN CB HB2 sing N N 130 GLN CB HB3 sing N N 131 GLN CG CD sing N N 132 GLN CG HG2 sing N N 133 GLN CG HG3 sing N N 134 GLN CD OE1 doub N N 135 GLN CD NE2 sing N N 136 GLN NE2 HE21 sing N N 137 GLN NE2 HE22 sing N N 138 GLN OXT HXT sing N N 139 GLU N CA sing N N 140 GLU N H sing N N 141 GLU N H2 sing N N 142 GLU CA C sing N N 143 GLU CA CB sing N N 144 GLU CA HA sing N N 145 GLU C O doub N N 146 GLU C OXT sing N N 147 GLU CB CG sing N N 148 GLU CB HB2 sing N N 149 GLU CB HB3 sing N N 150 GLU CG CD sing N N 151 GLU CG HG2 sing N N 152 GLU CG HG3 sing N N 153 GLU CD OE1 doub N N 154 GLU CD OE2 sing N N 155 GLU OE2 HE2 sing N N 156 GLU OXT HXT sing N N 157 GLY N CA sing N N 158 GLY N H sing N N 159 GLY N H2 sing N N 160 GLY CA C sing N N 161 GLY CA HA2 sing N N 162 GLY CA HA3 sing N N 163 GLY C O doub N N 164 GLY C OXT sing N N 165 GLY OXT HXT sing N N 166 GOL C1 O1 sing N N 167 GOL C1 C2 sing N N 168 GOL C1 H11 sing N N 169 GOL C1 H12 sing N N 170 GOL O1 HO1 sing N N 171 GOL C2 O2 sing N N 172 GOL C2 C3 sing N N 173 GOL C2 H2 sing N N 174 GOL O2 HO2 sing N N 175 GOL C3 O3 sing N N 176 GOL C3 H31 sing N N 177 GOL C3 H32 sing N N 178 GOL O3 HO3 sing N N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TRP N CA sing N N 357 TRP N H sing N N 358 TRP N H2 sing N N 359 TRP CA C sing N N 360 TRP CA CB sing N N 361 TRP CA HA sing N N 362 TRP C O doub N N 363 TRP C OXT sing N N 364 TRP CB CG sing N N 365 TRP CB HB2 sing N N 366 TRP CB HB3 sing N N 367 TRP CG CD1 doub Y N 368 TRP CG CD2 sing Y N 369 TRP CD1 NE1 sing Y N 370 TRP CD1 HD1 sing N N 371 TRP CD2 CE2 doub Y N 372 TRP CD2 CE3 sing Y N 373 TRP NE1 CE2 sing Y N 374 TRP NE1 HE1 sing N N 375 TRP CE2 CZ2 sing Y N 376 TRP CE3 CZ3 doub Y N 377 TRP CE3 HE3 sing N N 378 TRP CZ2 CH2 doub Y N 379 TRP CZ2 HZ2 sing N N 380 TRP CZ3 CH2 sing Y N 381 TRP CZ3 HZ3 sing N N 382 TRP CH2 HH2 sing N N 383 TRP OXT HXT sing N N 384 TYR N CA sing N N 385 TYR N H sing N N 386 TYR N H2 sing N N 387 TYR CA C sing N N 388 TYR CA CB sing N N 389 TYR CA HA sing N N 390 TYR C O doub N N 391 TYR C OXT sing N N 392 TYR CB CG sing N N 393 TYR CB HB2 sing N N 394 TYR CB HB3 sing N N 395 TYR CG CD1 doub Y N 396 TYR CG CD2 sing Y N 397 TYR CD1 CE1 sing Y N 398 TYR CD1 HD1 sing N N 399 TYR CD2 CE2 doub Y N 400 TYR CD2 HD2 sing N N 401 TYR CE1 CZ doub Y N 402 TYR CE1 HE1 sing N N 403 TYR CE2 CZ sing Y N 404 TYR CE2 HE2 sing N N 405 TYR CZ OH sing N N 406 TYR OH HH sing N N 407 TYR OXT HXT sing N N 408 VAL N CA sing N N 409 VAL N H sing N N 410 VAL N H2 sing N N 411 VAL CA C sing N N 412 VAL CA CB sing N N 413 VAL CA HA sing N N 414 VAL C O doub N N 415 VAL C OXT sing N N 416 VAL CB CG1 sing N N 417 VAL CB CG2 sing N N 418 VAL CB HB sing N N 419 VAL CG1 HG11 sing N N 420 VAL CG1 HG12 sing N N 421 VAL CG1 HG13 sing N N 422 VAL CG2 HG21 sing N N 423 VAL CG2 HG22 sing N N 424 VAL CG2 HG23 sing N N 425 VAL OXT HXT sing N N 426 # _atom_sites.entry_id 3DBA _atom_sites.fract_transf_matrix[1][1] 0.014793 _atom_sites.fract_transf_matrix[1][2] 0.008541 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017082 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005037 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_