HEADER TRANSCRIPTION REGULATOR 03-JUN-08 3DCF TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR OF THE TETR/ACRR FAMILY TITLE 2 (YP_290855.1) FROM THERMOBIFIDA FUSCA YX-ER1 AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR OF THE TETR/ACRR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA YX; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 GENE: YP_290855.1, TFU_2799; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_290855.1, TRANSCRIPTIONAL REGULATOR OF THE TETR/ACRR FAMILY, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-2, DNA-BINDING, TRANSCRIPTION, KEYWDS 4 TRANSCRIPTION REGULATION, BACTERIAL REGULATORY PROTEINS, TETR KEYWDS 5 FAMILY, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 30-OCT-24 3DCF 1 REMARK REVDAT 5 01-FEB-23 3DCF 1 SEQADV REVDAT 4 24-JUL-19 3DCF 1 REMARK LINK REVDAT 3 25-OCT-17 3DCF 1 REMARK REVDAT 2 24-FEB-09 3DCF 1 VERSN REVDAT 1 15-JUL-08 3DCF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR OF THE JRNL TITL 2 TETR/ACRR FAMILY (YP_290855.1) FROM THERMOBIFIDA FUSCA JRNL TITL 3 YX-ER1 AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 15414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 772 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2967 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 71 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.78000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.691 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.324 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.675 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3037 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2090 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4121 ; 1.438 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5025 ; 1.284 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 3.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;30.887 ;22.418 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;12.450 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ; 9.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3387 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 677 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 592 ; 0.150 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1813 ; 0.118 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1426 ; 0.144 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1400 ; 0.069 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 90 ; 0.100 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.055 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.098 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.055 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2327 ; 0.846 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 743 ; 0.135 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2958 ; 1.144 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 2.317 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1161 ; 3.259 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 30 A 215 1 REMARK 3 1 B 30 B 215 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2447 ; 0.020 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 2447 ; 0.040 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 4 REMARK 4 3DCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97968,0.97917,0.91837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.074 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31.0% 2-METHYL-2,4-PENTANEDIOL, 0.2M REMARK 280 SODIUM CHLORIDE, 0.1M TRIS PH 7.0, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE REMARK 300 ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 ASP A 8 REMARK 465 HIS A 9 REMARK 465 VAL A 10 REMARK 465 MSE A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 ASP A 17 REMARK 465 LYS A 18 REMARK 465 ARG A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 22 REMARK 465 THR A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 GLY A 28 REMARK 465 GLU A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 465 LEU A 134 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 ARG B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 SER B 7 REMARK 465 ASP B 8 REMARK 465 HIS B 9 REMARK 465 VAL B 10 REMARK 465 MSE B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 ASP B 17 REMARK 465 LYS B 18 REMARK 465 ARG B 19 REMARK 465 GLN B 20 REMARK 465 GLY B 21 REMARK 465 HIS B 22 REMARK 465 THR B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 25 REMARK 465 ARG B 26 REMARK 465 THR B 27 REMARK 465 GLY B 28 REMARK 465 GLU B 131 REMARK 465 ARG B 132 REMARK 465 GLY B 133 REMARK 465 LEU B 134 REMARK 465 PRO B 216 REMARK 465 ALA B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 31 NH1 NH2 REMARK 470 GLN A 34 CD OE1 NE2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 59 CD NE CZ NH1 NH2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 GLU B 41 CD OE1 OE2 REMARK 470 ASN B 130 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -71.02 -62.54 REMARK 500 ASP B 30 -73.10 -58.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 390257 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE DNA REMARK 999 SEQUENCING OF THE CLONED CONSTRUCT SHOWS A LEUCINE AT POSITION 127 REMARK 999 INSTEAD OF A VALINE. THE LEUCINE AT POSITION 127 IS SUPPORTED BY REMARK 999 THE ELECTRON DENSITY. DBREF 3DCF A 1 217 UNP Q47L40 Q47L40_THEFY 1 217 DBREF 3DCF B 1 217 UNP Q47L40 Q47L40_THEFY 1 217 SEQADV 3DCF GLY A 0 UNP Q47L40 EXPRESSION TAG SEQADV 3DCF LEU A 127 UNP Q47L40 VAL 127 SEE REMARK 999 SEQADV 3DCF GLY B 0 UNP Q47L40 EXPRESSION TAG SEQADV 3DCF LEU B 127 UNP Q47L40 VAL 127 SEE REMARK 999 SEQRES 1 A 218 GLY MSE GLY GLN ARG SER ASP SER ASP HIS VAL MSE ALA SEQRES 2 A 218 GLU ALA THR THR ASP LYS ARG GLN GLY HIS THR ARG GLY SEQRES 3 A 218 ARG THR GLY ASN ASP ARG ARG THR GLN ILE ILE LYS VAL SEQRES 4 A 218 ALA THR GLU LEU PHE ARG GLU LYS GLY TYR TYR ALA THR SEQRES 5 A 218 SER LEU ASP ASP ILE ALA ASP ARG ILE GLY PHE THR LYS SEQRES 6 A 218 PRO ALA ILE TYR TYR TYR PHE LYS SER LYS GLU ASP VAL SEQRES 7 A 218 LEU PHE ALA ILE VAL ASN SER ILE VAL ASP GLU ALA LEU SEQRES 8 A 218 GLU ARG PHE HIS ALA ILE ALA ALA GLY PRO GLY SER PRO SEQRES 9 A 218 GLY GLU ARG ILE HIS ALA LEU LEU VAL GLU HIS THR ARG SEQRES 10 A 218 THR ILE LEU ARG ASN LEU ASP ALA ASN THR LEU PHE TYR SEQRES 11 A 218 ASN GLU ARG GLY LEU LEU SER PRO GLU ARG GLU ARG GLU SEQRES 12 A 218 MSE ARG LYS ARG GLU ARG GLU TYR THR GLU ILE MSE GLN SEQRES 13 A 218 ARG LEU TYR ALA GLU GLY VAL ALA THR GLY GLU LEU LEU SEQRES 14 A 218 ASP VAL ASP PRO THR VAL ALA THR ALA THR LEU LEU GLY SEQRES 15 A 218 ALA ALA ILE TRP THR TYR ARG TRP TYR ASP PRO GLU GLY SEQRES 16 A 218 ARG LEU SER ALA ASP GLU VAL VAL GLU GLN ILE THR ARG SEQRES 17 A 218 LEU LEU LEU ASN GLY TYR ARG ARG PRO ALA SEQRES 1 B 218 GLY MSE GLY GLN ARG SER ASP SER ASP HIS VAL MSE ALA SEQRES 2 B 218 GLU ALA THR THR ASP LYS ARG GLN GLY HIS THR ARG GLY SEQRES 3 B 218 ARG THR GLY ASN ASP ARG ARG THR GLN ILE ILE LYS VAL SEQRES 4 B 218 ALA THR GLU LEU PHE ARG GLU LYS GLY TYR TYR ALA THR SEQRES 5 B 218 SER LEU ASP ASP ILE ALA ASP ARG ILE GLY PHE THR LYS SEQRES 6 B 218 PRO ALA ILE TYR TYR TYR PHE LYS SER LYS GLU ASP VAL SEQRES 7 B 218 LEU PHE ALA ILE VAL ASN SER ILE VAL ASP GLU ALA LEU SEQRES 8 B 218 GLU ARG PHE HIS ALA ILE ALA ALA GLY PRO GLY SER PRO SEQRES 9 B 218 GLY GLU ARG ILE HIS ALA LEU LEU VAL GLU HIS THR ARG SEQRES 10 B 218 THR ILE LEU ARG ASN LEU ASP ALA ASN THR LEU PHE TYR SEQRES 11 B 218 ASN GLU ARG GLY LEU LEU SER PRO GLU ARG GLU ARG GLU SEQRES 12 B 218 MSE ARG LYS ARG GLU ARG GLU TYR THR GLU ILE MSE GLN SEQRES 13 B 218 ARG LEU TYR ALA GLU GLY VAL ALA THR GLY GLU LEU LEU SEQRES 14 B 218 ASP VAL ASP PRO THR VAL ALA THR ALA THR LEU LEU GLY SEQRES 15 B 218 ALA ALA ILE TRP THR TYR ARG TRP TYR ASP PRO GLU GLY SEQRES 16 B 218 ARG LEU SER ALA ASP GLU VAL VAL GLU GLN ILE THR ARG SEQRES 17 B 218 LEU LEU LEU ASN GLY TYR ARG ARG PRO ALA MODRES 3DCF MSE A 143 MET SELENOMETHIONINE MODRES 3DCF MSE A 154 MET SELENOMETHIONINE MODRES 3DCF MSE B 143 MET SELENOMETHIONINE MODRES 3DCF MSE B 154 MET SELENOMETHIONINE HET MSE A 143 8 HET MSE A 154 8 HET MSE B 143 8 HET MSE B 154 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *71(H2 O) HELIX 1 1 ASN A 29 LYS A 46 1 18 HELIX 2 2 SER A 52 GLY A 61 1 10 HELIX 3 3 THR A 63 PHE A 71 1 9 HELIX 4 4 SER A 73 ALA A 98 1 26 HELIX 5 5 SER A 102 ASN A 121 1 20 HELIX 6 6 ASN A 121 ASN A 130 1 10 HELIX 7 7 SER A 136 THR A 164 1 29 HELIX 8 8 ASP A 171 TRP A 185 1 15 HELIX 9 9 TRP A 185 TYR A 190 1 6 HELIX 10 10 SER A 197 GLY A 212 1 16 HELIX 11 11 ASN B 29 LYS B 46 1 18 HELIX 12 12 SER B 52 GLY B 61 1 10 HELIX 13 13 THR B 63 PHE B 71 1 9 HELIX 14 14 SER B 73 ALA B 98 1 26 HELIX 15 15 SER B 102 ASN B 121 1 20 HELIX 16 16 ASN B 121 ASN B 130 1 10 HELIX 17 17 SER B 136 THR B 164 1 29 HELIX 18 18 ASP B 171 TRP B 185 1 15 HELIX 19 19 TRP B 185 TYR B 190 1 6 HELIX 20 20 SER B 197 GLY B 212 1 16 LINK C GLU A 142 N MSE A 143 1555 1555 1.34 LINK C MSE A 143 N ARG A 144 1555 1555 1.34 LINK C ILE A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N GLN A 155 1555 1555 1.34 LINK C GLU B 142 N MSE B 143 1555 1555 1.34 LINK C MSE B 143 N ARG B 144 1555 1555 1.34 LINK C ILE B 153 N MSE B 154 1555 1555 1.33 LINK C MSE B 154 N GLN B 155 1555 1555 1.34 CRYST1 47.870 67.620 72.980 90.00 104.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020890 0.000000 0.005297 0.00000 SCALE2 0.000000 0.014789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014136 0.00000 CONECT 869 876 CONECT 876 869 877 CONECT 877 876 878 880 CONECT 878 877 879 884 CONECT 879 878 CONECT 880 877 881 CONECT 881 880 882 CONECT 882 881 883 CONECT 883 882 CONECT 884 878 CONECT 974 980 CONECT 980 974 981 CONECT 981 980 982 984 CONECT 982 981 983 988 CONECT 983 982 CONECT 984 981 985 CONECT 985 984 986 CONECT 986 985 987 CONECT 987 986 CONECT 988 982 CONECT 2376 2383 CONECT 2383 2376 2384 CONECT 2384 2383 2385 2387 CONECT 2385 2384 2386 2391 CONECT 2386 2385 CONECT 2387 2384 2388 CONECT 2388 2387 2389 CONECT 2389 2388 2390 CONECT 2390 2389 CONECT 2391 2385 CONECT 2481 2487 CONECT 2487 2481 2488 CONECT 2488 2487 2489 2491 CONECT 2489 2488 2490 2495 CONECT 2490 2489 CONECT 2491 2488 2492 CONECT 2492 2491 2493 CONECT 2493 2492 2494 CONECT 2494 2493 CONECT 2495 2489 MASTER 389 0 4 20 0 0 0 6 3038 2 40 34 END