data_3DCM # _entry.id 3DCM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DCM pdb_00003dcm 10.2210/pdb3dcm/pdb RCSB RCSB047870 ? ? WWPDB D_1000047870 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'CHIRALITY ERROR AT THE CA CENTER OF PRO 76 AND SER 77' # _pdbx_database_status.entry_id 3DCM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2008-06-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, D.J.' 1 'Kim, H.S.' 2 'Lee, S.J.' 3 'Suh, S.W.' 4 # _citation.id primary _citation.title 'Crystal structure of Thermotoga maritima SPOUT superfamily RNA methyltransferase Tm1570 in complex with S-adenosyl-L-methionine' _citation.journal_abbrev Proteins _citation.journal_volume 74 _citation.page_first 245 _citation.page_last 249 _citation.year 2009 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18831037 _citation.pdbx_database_id_DOI 10.1002/prot.22249 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, D.J.' 1 ? primary 'Kim, H.S.' 2 ? primary 'Lee, S.J.' 3 ? primary 'Suh, S.W.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein TM_1570' 22008.250 1 ? ? ? ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 water nat water 18.015 128 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name AdoMet # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAE SLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEP IRAQSDFNHLSVRAAAAIIIDRLIGENYARRD ; _entity_poly.pdbx_seq_one_letter_code_can ;MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAE SLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEP IRAQSDFNHLSVRAAAAIIIDRLIGENYARRD ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 GLU n 1 4 LYS n 1 5 VAL n 1 6 TYR n 1 7 VAL n 1 8 ALA n 1 9 LEU n 1 10 ILE n 1 11 HIS n 1 12 TYR n 1 13 PRO n 1 14 ILE n 1 15 LYS n 1 16 GLY n 1 17 LYS n 1 18 ASP n 1 19 GLY n 1 20 SER n 1 21 ILE n 1 22 ILE n 1 23 SER n 1 24 THR n 1 25 ALA n 1 26 VAL n 1 27 THR n 1 28 ASN n 1 29 LEU n 1 30 ASP n 1 31 VAL n 1 32 HIS n 1 33 ASP n 1 34 ILE n 1 35 ALA n 1 36 ARG n 1 37 THR n 1 38 ALA n 1 39 ARG n 1 40 THR n 1 41 TYR n 1 42 ASN n 1 43 LEU n 1 44 LYS n 1 45 GLY n 1 46 TYR n 1 47 TYR n 1 48 ILE n 1 49 VAL n 1 50 THR n 1 51 ASN n 1 52 LEU n 1 53 ARG n 1 54 ALA n 1 55 GLN n 1 56 GLN n 1 57 ASP n 1 58 MET n 1 59 VAL n 1 60 SER n 1 61 LYS n 1 62 MET n 1 63 LEU n 1 64 LYS n 1 65 PHE n 1 66 TRP n 1 67 ARG n 1 68 GLU n 1 69 GLY n 1 70 PHE n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 TYR n 1 75 ASN n 1 76 PRO n 1 77 SER n 1 78 ARG n 1 79 ALA n 1 80 GLU n 1 81 SER n 1 82 LEU n 1 83 LYS n 1 84 LEU n 1 85 VAL n 1 86 LYS n 1 87 LEU n 1 88 LYS n 1 89 SER n 1 90 TYR n 1 91 LEU n 1 92 GLU n 1 93 ASP n 1 94 VAL n 1 95 LEU n 1 96 GLU n 1 97 ASP n 1 98 ILE n 1 99 GLU n 1 100 SER n 1 101 VAL n 1 102 GLU n 1 103 GLY n 1 104 GLU n 1 105 ARG n 1 106 PRO n 1 107 LEU n 1 108 ILE n 1 109 PHE n 1 110 PHE n 1 111 THR n 1 112 SER n 1 113 ALA n 1 114 LYS n 1 115 LYS n 1 116 ARG n 1 117 GLU n 1 118 ASN n 1 119 ASP n 1 120 ILE n 1 121 SER n 1 122 PHE n 1 123 GLU n 1 124 GLU n 1 125 GLY n 1 126 ARG n 1 127 ARG n 1 128 ILE n 1 129 ILE n 1 130 ILE n 1 131 GLU n 1 132 THR n 1 133 GLU n 1 134 LYS n 1 135 PRO n 1 136 VAL n 1 137 LEU n 1 138 ILE n 1 139 LEU n 1 140 LEU n 1 141 GLY n 1 142 THR n 1 143 GLY n 1 144 TRP n 1 145 GLY n 1 146 LEU n 1 147 PRO n 1 148 ASP n 1 149 GLU n 1 150 ILE n 1 151 LEU n 1 152 GLU n 1 153 ILE n 1 154 SER n 1 155 ASP n 1 156 TYR n 1 157 VAL n 1 158 LEU n 1 159 GLU n 1 160 PRO n 1 161 ILE n 1 162 ARG n 1 163 ALA n 1 164 GLN n 1 165 SER n 1 166 ASP n 1 167 PHE n 1 168 ASN n 1 169 HIS n 1 170 LEU n 1 171 SER n 1 172 VAL n 1 173 ARG n 1 174 ALA n 1 175 ALA n 1 176 ALA n 1 177 ALA n 1 178 ILE n 1 179 ILE n 1 180 ILE n 1 181 ASP n 1 182 ARG n 1 183 LEU n 1 184 ILE n 1 185 GLY n 1 186 GLU n 1 187 ASN n 1 188 TYR n 1 189 ALA n 1 190 ARG n 1 191 ARG n 1 192 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_1570 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET X . n A 1 2 LEU 2 2 2 LEU LEU X . n A 1 3 GLU 3 3 3 GLU GLU X . n A 1 4 LYS 4 4 4 LYS LYS X . n A 1 5 VAL 5 5 5 VAL VAL X . n A 1 6 TYR 6 6 6 TYR TYR X . n A 1 7 VAL 7 7 7 VAL VAL X . n A 1 8 ALA 8 8 8 ALA ALA X . n A 1 9 LEU 9 9 9 LEU LEU X . n A 1 10 ILE 10 10 10 ILE ILE X . n A 1 11 HIS 11 11 11 HIS HIS X . n A 1 12 TYR 12 12 12 TYR TYR X . n A 1 13 PRO 13 13 13 PRO PRO X . n A 1 14 ILE 14 14 14 ILE ILE X . n A 1 15 LYS 15 15 15 LYS LYS X . n A 1 16 GLY 16 16 16 GLY GLY X . n A 1 17 LYS 17 17 17 LYS LYS X . n A 1 18 ASP 18 18 18 ASP ASP X . n A 1 19 GLY 19 19 19 GLY GLY X . n A 1 20 SER 20 20 20 SER SER X . n A 1 21 ILE 21 21 21 ILE ILE X . n A 1 22 ILE 22 22 22 ILE ILE X . n A 1 23 SER 23 23 23 SER SER X . n A 1 24 THR 24 24 24 THR THR X . n A 1 25 ALA 25 25 25 ALA ALA X . n A 1 26 VAL 26 26 26 VAL VAL X . n A 1 27 THR 27 27 27 THR THR X . n A 1 28 ASN 28 28 28 ASN ASN X . n A 1 29 LEU 29 29 29 LEU LEU X . n A 1 30 ASP 30 30 30 ASP ASP X . n A 1 31 VAL 31 31 31 VAL VAL X . n A 1 32 HIS 32 32 32 HIS HIS X . n A 1 33 ASP 33 33 33 ASP ASP X . n A 1 34 ILE 34 34 34 ILE ILE X . n A 1 35 ALA 35 35 35 ALA ALA X . n A 1 36 ARG 36 36 36 ARG ARG X . n A 1 37 THR 37 37 37 THR THR X . n A 1 38 ALA 38 38 38 ALA ALA X . n A 1 39 ARG 39 39 39 ARG ARG X . n A 1 40 THR 40 40 40 THR THR X . n A 1 41 TYR 41 41 41 TYR TYR X . n A 1 42 ASN 42 42 42 ASN ASN X . n A 1 43 LEU 43 43 43 LEU LEU X . n A 1 44 LYS 44 44 44 LYS LYS X . n A 1 45 GLY 45 45 45 GLY GLY X . n A 1 46 TYR 46 46 46 TYR TYR X . n A 1 47 TYR 47 47 47 TYR TYR X . n A 1 48 ILE 48 48 48 ILE ILE X . n A 1 49 VAL 49 49 49 VAL VAL X . n A 1 50 THR 50 50 50 THR THR X . n A 1 51 ASN 51 51 51 ASN ASN X . n A 1 52 LEU 52 52 52 LEU LEU X . n A 1 53 ARG 53 53 53 ARG ARG X . n A 1 54 ALA 54 54 54 ALA ALA X . n A 1 55 GLN 55 55 55 GLN GLN X . n A 1 56 GLN 56 56 56 GLN GLN X . n A 1 57 ASP 57 57 57 ASP ASP X . n A 1 58 MET 58 58 58 MET MET X . n A 1 59 VAL 59 59 59 VAL VAL X . n A 1 60 SER 60 60 60 SER SER X . n A 1 61 LYS 61 61 61 LYS LYS X . n A 1 62 MET 62 62 62 MET MET X . n A 1 63 LEU 63 63 63 LEU LEU X . n A 1 64 LYS 64 64 64 LYS LYS X . n A 1 65 PHE 65 65 65 PHE PHE X . n A 1 66 TRP 66 66 66 TRP TRP X . n A 1 67 ARG 67 67 67 ARG ARG X . n A 1 68 GLU 68 68 68 GLU GLU X . n A 1 69 GLY 69 69 69 GLY GLY X . n A 1 70 PHE 70 70 70 PHE PHE X . n A 1 71 GLY 71 71 71 GLY GLY X . n A 1 72 SER 72 72 72 SER SER X . n A 1 73 ARG 73 73 73 ARG ARG X . n A 1 74 TYR 74 74 74 TYR TYR X . n A 1 75 ASN 75 75 75 ASN ASN X . n A 1 76 PRO 76 76 76 PRO PRO X . n A 1 77 SER 77 77 77 SER SER X . n A 1 78 ARG 78 78 78 ARG ARG X . n A 1 79 ALA 79 79 79 ALA ALA X . n A 1 80 GLU 80 80 80 GLU GLU X . n A 1 81 SER 81 81 81 SER SER X . n A 1 82 LEU 82 82 82 LEU LEU X . n A 1 83 LYS 83 83 83 LYS LYS X . n A 1 84 LEU 84 84 84 LEU LEU X . n A 1 85 VAL 85 85 85 VAL VAL X . n A 1 86 LYS 86 86 86 LYS LYS X . n A 1 87 LEU 87 87 87 LEU LEU X . n A 1 88 LYS 88 88 88 LYS LYS X . n A 1 89 SER 89 89 89 SER SER X . n A 1 90 TYR 90 90 90 TYR TYR X . n A 1 91 LEU 91 91 91 LEU LEU X . n A 1 92 GLU 92 92 92 GLU GLU X . n A 1 93 ASP 93 93 93 ASP ASP X . n A 1 94 VAL 94 94 94 VAL VAL X . n A 1 95 LEU 95 95 95 LEU LEU X . n A 1 96 GLU 96 96 96 GLU GLU X . n A 1 97 ASP 97 97 97 ASP ASP X . n A 1 98 ILE 98 98 98 ILE ILE X . n A 1 99 GLU 99 99 99 GLU GLU X . n A 1 100 SER 100 100 100 SER SER X . n A 1 101 VAL 101 101 101 VAL VAL X . n A 1 102 GLU 102 102 102 GLU GLU X . n A 1 103 GLY 103 103 103 GLY GLY X . n A 1 104 GLU 104 104 104 GLU GLU X . n A 1 105 ARG 105 105 105 ARG ARG X . n A 1 106 PRO 106 106 106 PRO PRO X . n A 1 107 LEU 107 107 107 LEU LEU X . n A 1 108 ILE 108 108 108 ILE ILE X . n A 1 109 PHE 109 109 109 PHE PHE X . n A 1 110 PHE 110 110 110 PHE PHE X . n A 1 111 THR 111 111 111 THR THR X . n A 1 112 SER 112 112 112 SER SER X . n A 1 113 ALA 113 113 113 ALA ALA X . n A 1 114 LYS 114 114 114 LYS LYS X . n A 1 115 LYS 115 115 115 LYS LYS X . n A 1 116 ARG 116 116 116 ARG ARG X . n A 1 117 GLU 117 117 117 GLU GLU X . n A 1 118 ASN 118 118 118 ASN ASN X . n A 1 119 ASP 119 119 119 ASP ASP X . n A 1 120 ILE 120 120 120 ILE ILE X . n A 1 121 SER 121 121 121 SER SER X . n A 1 122 PHE 122 122 122 PHE PHE X . n A 1 123 GLU 123 123 123 GLU GLU X . n A 1 124 GLU 124 124 124 GLU GLU X . n A 1 125 GLY 125 125 125 GLY GLY X . n A 1 126 ARG 126 126 126 ARG ARG X . n A 1 127 ARG 127 127 127 ARG ARG X . n A 1 128 ILE 128 128 128 ILE ILE X . n A 1 129 ILE 129 129 129 ILE ILE X . n A 1 130 ILE 130 130 130 ILE ILE X . n A 1 131 GLU 131 131 131 GLU GLU X . n A 1 132 THR 132 132 132 THR THR X . n A 1 133 GLU 133 133 133 GLU GLU X . n A 1 134 LYS 134 134 134 LYS LYS X . n A 1 135 PRO 135 135 135 PRO PRO X . n A 1 136 VAL 136 136 136 VAL VAL X . n A 1 137 LEU 137 137 137 LEU LEU X . n A 1 138 ILE 138 138 138 ILE ILE X . n A 1 139 LEU 139 139 139 LEU LEU X . n A 1 140 LEU 140 140 140 LEU LEU X . n A 1 141 GLY 141 141 141 GLY GLY X . n A 1 142 THR 142 142 142 THR THR X . n A 1 143 GLY 143 143 143 GLY GLY X . n A 1 144 TRP 144 144 144 TRP TRP X . n A 1 145 GLY 145 145 145 GLY GLY X . n A 1 146 LEU 146 146 146 LEU LEU X . n A 1 147 PRO 147 147 147 PRO PRO X . n A 1 148 ASP 148 148 148 ASP ASP X . n A 1 149 GLU 149 149 149 GLU GLU X . n A 1 150 ILE 150 150 150 ILE ILE X . n A 1 151 LEU 151 151 151 LEU LEU X . n A 1 152 GLU 152 152 152 GLU GLU X . n A 1 153 ILE 153 153 153 ILE ILE X . n A 1 154 SER 154 154 154 SER SER X . n A 1 155 ASP 155 155 155 ASP ASP X . n A 1 156 TYR 156 156 156 TYR TYR X . n A 1 157 VAL 157 157 157 VAL VAL X . n A 1 158 LEU 158 158 158 LEU LEU X . n A 1 159 GLU 159 159 159 GLU GLU X . n A 1 160 PRO 160 160 160 PRO PRO X . n A 1 161 ILE 161 161 161 ILE ILE X . n A 1 162 ARG 162 162 162 ARG ARG X . n A 1 163 ALA 163 163 163 ALA ALA X . n A 1 164 GLN 164 164 164 GLN GLN X . n A 1 165 SER 165 165 165 SER SER X . n A 1 166 ASP 166 166 166 ASP ASP X . n A 1 167 PHE 167 167 167 PHE PHE X . n A 1 168 ASN 168 168 168 ASN ASN X . n A 1 169 HIS 169 169 169 HIS HIS X . n A 1 170 LEU 170 170 170 LEU LEU X . n A 1 171 SER 171 171 171 SER SER X . n A 1 172 VAL 172 172 172 VAL VAL X . n A 1 173 ARG 173 173 173 ARG ARG X . n A 1 174 ALA 174 174 174 ALA ALA X . n A 1 175 ALA 175 175 175 ALA ALA X . n A 1 176 ALA 176 176 176 ALA ALA X . n A 1 177 ALA 177 177 177 ALA ALA X . n A 1 178 ILE 178 178 178 ILE ILE X . n A 1 179 ILE 179 179 179 ILE ILE X . n A 1 180 ILE 180 180 180 ILE ILE X . n A 1 181 ASP 181 181 181 ASP ASP X . n A 1 182 ARG 182 182 182 ARG ARG X . n A 1 183 LEU 183 183 183 LEU LEU X . n A 1 184 ILE 184 184 184 ILE ILE X . n A 1 185 GLY 185 185 185 GLY GLY X . n A 1 186 GLU 186 186 186 GLU GLU X . n A 1 187 ASN 187 187 187 ASN ASN X . n A 1 188 TYR 188 188 188 TYR TYR X . n A 1 189 ALA 189 189 ? ? ? X . n A 1 190 ARG 190 190 ? ? ? X . n A 1 191 ARG 191 191 ? ? ? X . n A 1 192 ASP 192 192 ? ? ? X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 5452 5452 SAM SAM X . C 3 HOH 1 5453 1 HOH HOH X . C 3 HOH 2 5454 2 HOH HOH X . C 3 HOH 3 5455 3 HOH HOH X . C 3 HOH 4 5456 4 HOH HOH X . C 3 HOH 5 5457 5 HOH HOH X . C 3 HOH 6 5458 6 HOH HOH X . C 3 HOH 7 5459 7 HOH HOH X . C 3 HOH 8 5460 8 HOH HOH X . C 3 HOH 9 5461 9 HOH HOH X . C 3 HOH 10 5462 10 HOH HOH X . C 3 HOH 11 5463 11 HOH HOH X . C 3 HOH 12 5464 12 HOH HOH X . C 3 HOH 13 5465 13 HOH HOH X . C 3 HOH 14 5466 14 HOH HOH X . C 3 HOH 15 5467 15 HOH HOH X . C 3 HOH 16 5468 16 HOH HOH X . C 3 HOH 17 5469 17 HOH HOH X . C 3 HOH 18 5470 18 HOH HOH X . C 3 HOH 19 5471 19 HOH HOH X . C 3 HOH 20 5472 20 HOH HOH X . C 3 HOH 21 5473 21 HOH HOH X . C 3 HOH 22 5474 22 HOH HOH X . C 3 HOH 23 5475 23 HOH HOH X . C 3 HOH 24 5476 24 HOH HOH X . C 3 HOH 25 5477 25 HOH HOH X . C 3 HOH 26 5478 26 HOH HOH X . C 3 HOH 27 5479 27 HOH HOH X . C 3 HOH 28 5480 28 HOH HOH X . C 3 HOH 29 5481 29 HOH HOH X . C 3 HOH 30 5482 30 HOH HOH X . C 3 HOH 31 5483 31 HOH HOH X . C 3 HOH 32 5484 32 HOH HOH X . C 3 HOH 33 5485 33 HOH HOH X . C 3 HOH 34 5486 34 HOH HOH X . C 3 HOH 35 5487 35 HOH HOH X . C 3 HOH 36 5488 36 HOH HOH X . C 3 HOH 37 5489 37 HOH HOH X . C 3 HOH 38 5490 38 HOH HOH X . C 3 HOH 39 5491 39 HOH HOH X . C 3 HOH 40 5492 40 HOH HOH X . C 3 HOH 41 5493 41 HOH HOH X . C 3 HOH 42 5494 42 HOH HOH X . C 3 HOH 43 5495 43 HOH HOH X . C 3 HOH 44 5496 44 HOH HOH X . C 3 HOH 45 5497 45 HOH HOH X . C 3 HOH 46 5498 46 HOH HOH X . C 3 HOH 47 5499 47 HOH HOH X . C 3 HOH 48 5500 48 HOH HOH X . C 3 HOH 49 5501 49 HOH HOH X . C 3 HOH 50 5502 50 HOH HOH X . C 3 HOH 51 5503 51 HOH HOH X . C 3 HOH 52 5504 52 HOH HOH X . C 3 HOH 53 5505 53 HOH HOH X . C 3 HOH 54 5506 54 HOH HOH X . C 3 HOH 55 5507 55 HOH HOH X . C 3 HOH 56 5508 56 HOH HOH X . C 3 HOH 57 5509 57 HOH HOH X . C 3 HOH 58 5510 58 HOH HOH X . C 3 HOH 59 5511 59 HOH HOH X . C 3 HOH 60 5512 60 HOH HOH X . C 3 HOH 61 5513 61 HOH HOH X . C 3 HOH 62 5514 62 HOH HOH X . C 3 HOH 63 5515 63 HOH HOH X . C 3 HOH 64 5516 64 HOH HOH X . C 3 HOH 65 5517 65 HOH HOH X . C 3 HOH 66 5518 66 HOH HOH X . C 3 HOH 67 5519 67 HOH HOH X . C 3 HOH 68 5520 68 HOH HOH X . C 3 HOH 69 5521 69 HOH HOH X . C 3 HOH 70 5522 70 HOH HOH X . C 3 HOH 71 5523 71 HOH HOH X . C 3 HOH 72 5524 72 HOH HOH X . C 3 HOH 73 5525 73 HOH HOH X . C 3 HOH 74 5526 74 HOH HOH X . C 3 HOH 75 5527 75 HOH HOH X . C 3 HOH 76 5528 76 HOH HOH X . C 3 HOH 77 5529 77 HOH HOH X . C 3 HOH 78 5530 78 HOH HOH X . C 3 HOH 79 5531 2 HOH HOH X . C 3 HOH 80 5532 7 HOH HOH X . C 3 HOH 81 5533 8 HOH HOH X . C 3 HOH 82 5534 9 HOH HOH X . C 3 HOH 83 5535 10 HOH HOH X . C 3 HOH 84 5536 11 HOH HOH X . C 3 HOH 85 5537 13 HOH HOH X . C 3 HOH 86 5538 14 HOH HOH X . C 3 HOH 87 5539 15 HOH HOH X . C 3 HOH 88 5540 19 HOH HOH X . C 3 HOH 89 5541 21 HOH HOH X . C 3 HOH 90 5542 25 HOH HOH X . C 3 HOH 91 5543 27 HOH HOH X . C 3 HOH 92 5544 30 HOH HOH X . C 3 HOH 93 5545 31 HOH HOH X . C 3 HOH 94 5546 32 HOH HOH X . C 3 HOH 95 5547 33 HOH HOH X . C 3 HOH 96 5548 38 HOH HOH X . C 3 HOH 97 5549 39 HOH HOH X . C 3 HOH 98 5550 43 HOH HOH X . C 3 HOH 99 5551 44 HOH HOH X . C 3 HOH 100 5552 47 HOH HOH X . C 3 HOH 101 5553 49 HOH HOH X . C 3 HOH 102 5554 53 HOH HOH X . C 3 HOH 103 5555 55 HOH HOH X . C 3 HOH 104 5556 57 HOH HOH X . C 3 HOH 105 5557 60 HOH HOH X . C 3 HOH 106 5558 68 HOH HOH X . C 3 HOH 107 5559 69 HOH HOH X . C 3 HOH 108 5560 70 HOH HOH X . C 3 HOH 109 5561 85 HOH HOH X . C 3 HOH 110 5562 86 HOH HOH X . C 3 HOH 111 5563 96 HOH HOH X . C 3 HOH 112 5564 100 HOH HOH X . C 3 HOH 113 5565 102 HOH HOH X . C 3 HOH 114 5566 103 HOH HOH X . C 3 HOH 115 5567 104 HOH HOH X . C 3 HOH 116 5568 105 HOH HOH X . C 3 HOH 117 5569 107 HOH HOH X . C 3 HOH 118 5570 111 HOH HOH X . C 3 HOH 119 5571 112 HOH HOH X . C 3 HOH 120 5572 113 HOH HOH X . C 3 HOH 121 5573 115 HOH HOH X . C 3 HOH 122 5574 17 HOH HOH X . C 3 HOH 123 5575 25 HOH HOH X . C 3 HOH 124 5576 27 HOH HOH X . C 3 HOH 125 5577 30 HOH HOH X . C 3 HOH 126 5578 60 HOH HOH X . C 3 HOH 127 5579 81 HOH HOH X . C 3 HOH 128 5580 89 HOH HOH X . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 SOLVE . ? ? ? ? phasing ? ? ? 6 # _cell.length_a 79.648 _cell.length_b 63.402 _cell.length_c 54.522 _cell.angle_alpha 90.000 _cell.angle_beta 129.030 _cell.angle_gamma 90.000 _cell.entry_id 3DCM _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3DCM _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3DCM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity 0.906 _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 49.37 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '100mM Tris-HCl pH 7.0, 200mM calcium acetate, 20% (v/v) PEG 3000, VAPOR DIFFUSION, HANGING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'Bruker Platinum 135' 2004-10-21 ? 2 CCD 'Bruker Platinum 135' 2004-10-21 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 1 'SINGLE WAVELENGTH' ? M x-ray 2 1 MAD ? M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0000 1.0 2 1.07163 1.0 3 1.07204 1.0 4 1.06261 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'PAL/PLS BEAMLINE 6B' ? 1.0000 PAL/PLS 6B 2 SYNCHROTRON 'PAL/PLS BEAMLINE 6B' ? '1.07163, 1.07204, 1.06261' PAL/PLS 6B # _reflns.entry_id 3DCM _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 20.000 _reflns.number_obs 14038 _reflns.pdbx_Rmerge_I_obs 0.071 _reflns.pdbx_netI_over_sigmaI 14.500 _reflns.pdbx_chi_squared 2.005 _reflns.pdbx_redundancy 4.600 _reflns.percent_possible_obs 98.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.247 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 1.432 _reflns_shell.pdbx_redundancy 4.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1282 _reflns_shell.percent_possible_all 91.20 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DCM _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 17.43 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.170 _refine.ls_number_reflns_obs 14038 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_obs 0.201 _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.235 _refine.ls_percent_reflns_R_free 10.100 _refine.ls_number_reflns_R_free 1412 _refine.B_iso_mean 24.379 _refine.aniso_B[1][1] 0.890 _refine.aniso_B[2][2] -1.940 _refine.aniso_B[3][3] 0.410 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.510 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.930 _refine.pdbx_overall_ESU_R 0.218 _refine.pdbx_overall_ESU_R_Free 0.178 _refine.overall_SU_ML 0.111 _refine.overall_SU_B 3.885 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1515 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 128 _refine_hist.number_atoms_total 1670 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 17.43 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1571 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2125 1.417 1.997 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 187 10.967 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 71 33.469 23.521 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 287 15.828 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 14.518 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 242 0.361 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1156 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 758 0.211 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1095 0.300 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 135 0.137 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 58 0.162 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 21 0.157 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 965 0.858 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1521 1.107 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 692 1.608 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 604 2.614 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.001 _refine_ls_shell.d_res_low 2.053 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 87.340 _refine_ls_shell.number_reflns_R_work 816 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.207 _refine_ls_shell.R_factor_R_free 0.362 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 88 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 904 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DCM _struct.title ;Crystal structure of the Thermotoga maritima SPOUT family RNA-methyltransferase protein Tm1570 in complex with S-adenosyl-L-methionine ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DCM _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'Trefoil knot, SPOUT Mtase, AdoMet binding, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y1570_THEMA _struct_ref.pdbx_db_accession Q9X1Q6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAE SLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEP IRAQSDFNHLSVRAAAAIIIDRLIGENYARRD ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DCM _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 192 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X1Q6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 192 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 192 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3110 ? 1 MORE -0 ? 1 'SSA (A^2)' 16160 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 45.3140126508 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 42.3535806834 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 27 ? TYR A 41 ? THR X 27 TYR X 41 1 ? 15 HELX_P HELX_P2 2 LEU A 52 ? GLU A 68 ? LEU X 52 GLU X 68 1 ? 17 HELX_P HELX_P3 3 GLY A 69 ? TYR A 74 ? GLY X 69 TYR X 74 5 ? 6 HELX_P HELX_P4 4 ARG A 78 ? LYS A 83 ? ARG X 78 LYS X 83 1 ? 6 HELX_P HELX_P5 5 TYR A 90 ? GLY A 103 ? TYR X 90 GLY X 103 1 ? 14 HELX_P HELX_P6 6 SER A 121 ? THR A 132 ? SER X 121 THR X 132 1 ? 12 HELX_P HELX_P7 7 PRO A 147 ? GLU A 152 ? PRO X 147 GLU X 152 1 ? 6 HELX_P HELX_P8 8 SER A 171 ? ILE A 184 ? SER X 171 ILE X 184 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 12 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 12 _struct_mon_prot_cis.auth_asym_id X _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 13 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 13 _struct_mon_prot_cis.pdbx_auth_asym_id_2 X _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -4.16 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 85 ? LYS A 88 ? VAL X 85 LYS X 88 A 2 GLY A 45 ? VAL A 49 ? GLY X 45 VAL X 49 A 3 VAL A 5 ? ILE A 10 ? VAL X 5 ILE X 10 A 4 VAL A 136 ? LEU A 140 ? VAL X 136 LEU X 140 A 5 LEU A 107 ? PHE A 110 ? LEU X 107 PHE X 110 A 6 TYR A 156 ? VAL A 157 ? TYR X 156 VAL X 157 B 1 ILE A 14 ? LYS A 15 ? ILE X 14 LYS X 15 B 2 ILE A 21 ? ILE A 22 ? ILE X 21 ILE X 22 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 88 ? O LYS X 88 N ILE A 48 ? N ILE X 48 A 2 3 O TYR A 47 ? O TYR X 47 N VAL A 7 ? N VAL X 7 A 3 4 N ILE A 10 ? N ILE X 10 O LEU A 140 ? O LEU X 140 A 4 5 O LEU A 139 ? O LEU X 139 N PHE A 109 ? N PHE X 109 A 5 6 N PHE A 110 ? N PHE X 110 O TYR A 156 ? O TYR X 156 B 1 2 N ILE A 14 ? N ILE X 14 O ILE A 22 ? O ILE X 22 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 16 _struct_site.details 'BINDING SITE FOR RESIDUE SAM X5452' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 16 THR A 111 ? THR X 111 . ? 1_555 ? 2 AC1 16 SER A 112 ? SER X 112 . ? 1_555 ? 3 AC1 16 ALA A 113 ? ALA X 113 . ? 1_555 ? 4 AC1 16 LEU A 140 ? LEU X 140 . ? 1_555 ? 5 AC1 16 GLY A 141 ? GLY X 141 . ? 1_555 ? 6 AC1 16 GLY A 143 ? GLY X 143 . ? 1_555 ? 7 AC1 16 GLY A 145 ? GLY X 145 . ? 1_555 ? 8 AC1 16 PRO A 160 ? PRO X 160 . ? 1_555 ? 9 AC1 16 ILE A 161 ? ILE X 161 . ? 1_555 ? 10 AC1 16 ASN A 168 ? ASN X 168 . ? 1_555 ? 11 AC1 16 LEU A 170 ? LEU X 170 . ? 1_555 ? 12 AC1 16 SER A 171 ? SER X 171 . ? 1_555 ? 13 AC1 16 VAL A 172 ? VAL X 172 . ? 1_555 ? 14 AC1 16 ALA A 175 ? ALA X 175 . ? 1_555 ? 15 AC1 16 HOH C . ? HOH X 5483 . ? 1_555 ? 16 AC1 16 HOH C . ? HOH X 5529 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 5458 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 X _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 5494 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CA X GLY 19 ? ? C X GLY 19 ? ? 1.687 1.514 0.173 0.016 N 2 1 N X SER 20 ? ? CA X SER 20 ? ? 1.626 1.459 0.167 0.020 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C X ASN 75 ? ? N X PRO 76 ? ? CA X PRO 76 ? ? 131.36 119.30 12.06 1.50 Y 2 1 N X PRO 76 ? ? CA X PRO 76 ? ? C X PRO 76 ? ? 128.76 112.10 16.66 2.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS X 4 ? ? -144.56 39.79 2 1 SER X 20 ? ? -16.89 149.06 3 1 ASN X 75 ? ? -97.58 -140.09 4 1 PRO X 76 ? ? 101.70 33.47 5 1 ASN X 168 ? ? -143.96 26.27 6 1 GLU X 186 ? ? -91.91 42.76 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY X 19 ? ? SER X 20 ? ? 94.58 2 1 TYR X 74 ? ? ASN X 75 ? ? 148.75 3 1 ASN X 75 ? ? PRO X 76 ? ? -140.29 4 1 PRO X 76 ? ? SER X 77 ? ? 70.07 5 1 SER X 77 ? ? ARG X 78 ? ? 147.76 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CA ? X PRO 76 ? 'WRONG HAND' . 2 1 CA ? X SER 77 ? 'WRONG HAND' . # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id X _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 5491 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X ALA 189 ? A ALA 189 2 1 Y 1 X ARG 190 ? A ARG 190 3 1 Y 1 X ARG 191 ? A ARG 191 4 1 Y 1 X ASP 192 ? A ASP 192 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MET N N N N 216 MET CA C N S 217 MET C C N N 218 MET O O N N 219 MET CB C N N 220 MET CG C N N 221 MET SD S N N 222 MET CE C N N 223 MET OXT O N N 224 MET H H N N 225 MET H2 H N N 226 MET HA H N N 227 MET HB2 H N N 228 MET HB3 H N N 229 MET HG2 H N N 230 MET HG3 H N N 231 MET HE1 H N N 232 MET HE2 H N N 233 MET HE3 H N N 234 MET HXT H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SAM N N N N 276 SAM CA C N S 277 SAM C C N N 278 SAM O O N N 279 SAM OXT O N N 280 SAM CB C N N 281 SAM CG C N N 282 SAM SD S N S 283 SAM CE C N N 284 SAM "C5'" C N N 285 SAM "C4'" C N S 286 SAM "O4'" O N N 287 SAM "C3'" C N S 288 SAM "O3'" O N N 289 SAM "C2'" C N R 290 SAM "O2'" O N N 291 SAM "C1'" C N R 292 SAM N9 N Y N 293 SAM C8 C Y N 294 SAM N7 N Y N 295 SAM C5 C Y N 296 SAM C6 C Y N 297 SAM N6 N N N 298 SAM N1 N Y N 299 SAM C2 C Y N 300 SAM N3 N Y N 301 SAM C4 C Y N 302 SAM HN1 H N N 303 SAM HN2 H N N 304 SAM HA H N N 305 SAM HB1 H N N 306 SAM HB2 H N N 307 SAM HG1 H N N 308 SAM HG2 H N N 309 SAM HE1 H N N 310 SAM HE2 H N N 311 SAM HE3 H N N 312 SAM "H5'1" H N N 313 SAM "H5'2" H N N 314 SAM "H4'" H N N 315 SAM "H3'" H N N 316 SAM "HO3'" H N N 317 SAM "H2'" H N N 318 SAM "HO2'" H N N 319 SAM "H1'" H N N 320 SAM H8 H N N 321 SAM HN61 H N N 322 SAM HN62 H N N 323 SAM H2 H N N 324 SER N N N N 325 SER CA C N S 326 SER C C N N 327 SER O O N N 328 SER CB C N N 329 SER OG O N N 330 SER OXT O N N 331 SER H H N N 332 SER H2 H N N 333 SER HA H N N 334 SER HB2 H N N 335 SER HB3 H N N 336 SER HG H N N 337 SER HXT H N N 338 THR N N N N 339 THR CA C N S 340 THR C C N N 341 THR O O N N 342 THR CB C N R 343 THR OG1 O N N 344 THR CG2 C N N 345 THR OXT O N N 346 THR H H N N 347 THR H2 H N N 348 THR HA H N N 349 THR HB H N N 350 THR HG1 H N N 351 THR HG21 H N N 352 THR HG22 H N N 353 THR HG23 H N N 354 THR HXT H N N 355 TRP N N N N 356 TRP CA C N S 357 TRP C C N N 358 TRP O O N N 359 TRP CB C N N 360 TRP CG C Y N 361 TRP CD1 C Y N 362 TRP CD2 C Y N 363 TRP NE1 N Y N 364 TRP CE2 C Y N 365 TRP CE3 C Y N 366 TRP CZ2 C Y N 367 TRP CZ3 C Y N 368 TRP CH2 C Y N 369 TRP OXT O N N 370 TRP H H N N 371 TRP H2 H N N 372 TRP HA H N N 373 TRP HB2 H N N 374 TRP HB3 H N N 375 TRP HD1 H N N 376 TRP HE1 H N N 377 TRP HE3 H N N 378 TRP HZ2 H N N 379 TRP HZ3 H N N 380 TRP HH2 H N N 381 TRP HXT H N N 382 TYR N N N N 383 TYR CA C N S 384 TYR C C N N 385 TYR O O N N 386 TYR CB C N N 387 TYR CG C Y N 388 TYR CD1 C Y N 389 TYR CD2 C Y N 390 TYR CE1 C Y N 391 TYR CE2 C Y N 392 TYR CZ C Y N 393 TYR OH O N N 394 TYR OXT O N N 395 TYR H H N N 396 TYR H2 H N N 397 TYR HA H N N 398 TYR HB2 H N N 399 TYR HB3 H N N 400 TYR HD1 H N N 401 TYR HD2 H N N 402 TYR HE1 H N N 403 TYR HE2 H N N 404 TYR HH H N N 405 TYR HXT H N N 406 VAL N N N N 407 VAL CA C N S 408 VAL C C N N 409 VAL O O N N 410 VAL CB C N N 411 VAL CG1 C N N 412 VAL CG2 C N N 413 VAL OXT O N N 414 VAL H H N N 415 VAL H2 H N N 416 VAL HA H N N 417 VAL HB H N N 418 VAL HG11 H N N 419 VAL HG12 H N N 420 VAL HG13 H N N 421 VAL HG21 H N N 422 VAL HG22 H N N 423 VAL HG23 H N N 424 VAL HXT H N N 425 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MET N CA sing N N 205 MET N H sing N N 206 MET N H2 sing N N 207 MET CA C sing N N 208 MET CA CB sing N N 209 MET CA HA sing N N 210 MET C O doub N N 211 MET C OXT sing N N 212 MET CB CG sing N N 213 MET CB HB2 sing N N 214 MET CB HB3 sing N N 215 MET CG SD sing N N 216 MET CG HG2 sing N N 217 MET CG HG3 sing N N 218 MET SD CE sing N N 219 MET CE HE1 sing N N 220 MET CE HE2 sing N N 221 MET CE HE3 sing N N 222 MET OXT HXT sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SAM N CA sing N N 264 SAM N HN1 sing N N 265 SAM N HN2 sing N N 266 SAM CA C sing N N 267 SAM CA CB sing N N 268 SAM CA HA sing N N 269 SAM C O doub N N 270 SAM C OXT sing N N 271 SAM CB CG sing N N 272 SAM CB HB1 sing N N 273 SAM CB HB2 sing N N 274 SAM CG SD sing N N 275 SAM CG HG1 sing N N 276 SAM CG HG2 sing N N 277 SAM SD CE sing N N 278 SAM SD "C5'" sing N N 279 SAM CE HE1 sing N N 280 SAM CE HE2 sing N N 281 SAM CE HE3 sing N N 282 SAM "C5'" "C4'" sing N N 283 SAM "C5'" "H5'1" sing N N 284 SAM "C5'" "H5'2" sing N N 285 SAM "C4'" "O4'" sing N N 286 SAM "C4'" "C3'" sing N N 287 SAM "C4'" "H4'" sing N N 288 SAM "O4'" "C1'" sing N N 289 SAM "C3'" "O3'" sing N N 290 SAM "C3'" "C2'" sing N N 291 SAM "C3'" "H3'" sing N N 292 SAM "O3'" "HO3'" sing N N 293 SAM "C2'" "O2'" sing N N 294 SAM "C2'" "C1'" sing N N 295 SAM "C2'" "H2'" sing N N 296 SAM "O2'" "HO2'" sing N N 297 SAM "C1'" N9 sing N N 298 SAM "C1'" "H1'" sing N N 299 SAM N9 C8 sing Y N 300 SAM N9 C4 sing Y N 301 SAM C8 N7 doub Y N 302 SAM C8 H8 sing N N 303 SAM N7 C5 sing Y N 304 SAM C5 C6 sing Y N 305 SAM C5 C4 doub Y N 306 SAM C6 N6 sing N N 307 SAM C6 N1 doub Y N 308 SAM N6 HN61 sing N N 309 SAM N6 HN62 sing N N 310 SAM N1 C2 sing Y N 311 SAM C2 N3 doub Y N 312 SAM C2 H2 sing N N 313 SAM N3 C4 sing Y N 314 SER N CA sing N N 315 SER N H sing N N 316 SER N H2 sing N N 317 SER CA C sing N N 318 SER CA CB sing N N 319 SER CA HA sing N N 320 SER C O doub N N 321 SER C OXT sing N N 322 SER CB OG sing N N 323 SER CB HB2 sing N N 324 SER CB HB3 sing N N 325 SER OG HG sing N N 326 SER OXT HXT sing N N 327 THR N CA sing N N 328 THR N H sing N N 329 THR N H2 sing N N 330 THR CA C sing N N 331 THR CA CB sing N N 332 THR CA HA sing N N 333 THR C O doub N N 334 THR C OXT sing N N 335 THR CB OG1 sing N N 336 THR CB CG2 sing N N 337 THR CB HB sing N N 338 THR OG1 HG1 sing N N 339 THR CG2 HG21 sing N N 340 THR CG2 HG22 sing N N 341 THR CG2 HG23 sing N N 342 THR OXT HXT sing N N 343 TRP N CA sing N N 344 TRP N H sing N N 345 TRP N H2 sing N N 346 TRP CA C sing N N 347 TRP CA CB sing N N 348 TRP CA HA sing N N 349 TRP C O doub N N 350 TRP C OXT sing N N 351 TRP CB CG sing N N 352 TRP CB HB2 sing N N 353 TRP CB HB3 sing N N 354 TRP CG CD1 doub Y N 355 TRP CG CD2 sing Y N 356 TRP CD1 NE1 sing Y N 357 TRP CD1 HD1 sing N N 358 TRP CD2 CE2 doub Y N 359 TRP CD2 CE3 sing Y N 360 TRP NE1 CE2 sing Y N 361 TRP NE1 HE1 sing N N 362 TRP CE2 CZ2 sing Y N 363 TRP CE3 CZ3 doub Y N 364 TRP CE3 HE3 sing N N 365 TRP CZ2 CH2 doub Y N 366 TRP CZ2 HZ2 sing N N 367 TRP CZ3 CH2 sing Y N 368 TRP CZ3 HZ3 sing N N 369 TRP CH2 HH2 sing N N 370 TRP OXT HXT sing N N 371 TYR N CA sing N N 372 TYR N H sing N N 373 TYR N H2 sing N N 374 TYR CA C sing N N 375 TYR CA CB sing N N 376 TYR CA HA sing N N 377 TYR C O doub N N 378 TYR C OXT sing N N 379 TYR CB CG sing N N 380 TYR CB HB2 sing N N 381 TYR CB HB3 sing N N 382 TYR CG CD1 doub Y N 383 TYR CG CD2 sing Y N 384 TYR CD1 CE1 sing Y N 385 TYR CD1 HD1 sing N N 386 TYR CD2 CE2 doub Y N 387 TYR CD2 HD2 sing N N 388 TYR CE1 CZ doub Y N 389 TYR CE1 HE1 sing N N 390 TYR CE2 CZ sing Y N 391 TYR CE2 HE2 sing N N 392 TYR CZ OH sing N N 393 TYR OH HH sing N N 394 TYR OXT HXT sing N N 395 VAL N CA sing N N 396 VAL N H sing N N 397 VAL N H2 sing N N 398 VAL CA C sing N N 399 VAL CA CB sing N N 400 VAL CA HA sing N N 401 VAL C O doub N N 402 VAL C OXT sing N N 403 VAL CB CG1 sing N N 404 VAL CB CG2 sing N N 405 VAL CB HB sing N N 406 VAL CG1 HG11 sing N N 407 VAL CG1 HG12 sing N N 408 VAL CG1 HG13 sing N N 409 VAL CG2 HG21 sing N N 410 VAL CG2 HG22 sing N N 411 VAL CG2 HG23 sing N N 412 VAL OXT HXT sing N N 413 # _atom_sites.entry_id 3DCM _atom_sites.fract_transf_matrix[1][1] 0.012555 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010178 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015772 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023611 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_