HEADER OXIDOREDUCTASE 04-JUN-08 3DCZ TITLE CRYSTAL STRUCTURE OF A PUTATIVE RNFG SUBUNIT OF ELECTRON TRANSPORT TITLE 2 COMPLEX (TM0246) FROM THERMOTOGA MARITIMA AT 1.65 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE RNFG SUBUNIT OF ELECTRON TRANSPORT COMPLEX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_0246; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DL41; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MH4A KEYWDS PUTATIVE RNFG SUBUNIT OF ELECTRON TRANSPORT COMPLEX, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3DCZ 1 REMARK SEQADV REVDAT 6 24-JUL-19 3DCZ 1 REMARK LINK REVDAT 5 25-OCT-17 3DCZ 1 REMARK REVDAT 4 13-JUL-11 3DCZ 1 VERSN REVDAT 3 28-JUL-10 3DCZ 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3DCZ 1 VERSN REVDAT 1 24-JUN-08 3DCZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE RNFG SUBUNIT OF ELECTRON JRNL TITL 2 TRANSPORT COMPLEX (TM0246) FROM THERMOTOGA MARITIMA AT 1.65 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25581 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1304 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.023 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1404 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 959 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1915 ; 1.481 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2364 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 5.308 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;35.765 ;24.107 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;13.606 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.145 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 224 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1552 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 273 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 268 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 969 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 673 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 744 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 128 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.163 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 906 ; 2.053 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 356 ; 0.489 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1433 ; 2.989 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 553 ; 4.256 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 470 ; 6.114 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2107 35.4521 18.5391 REMARK 3 T TENSOR REMARK 3 T11: -0.0385 T22: -0.0296 REMARK 3 T33: -0.0461 T12: -0.0145 REMARK 3 T13: -0.0078 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.2594 L22: 1.3301 REMARK 3 L33: 1.0959 L12: 0.0061 REMARK 3 L13: -0.5280 L23: 0.2736 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0414 S13: 0.0615 REMARK 3 S21: 0.0989 S22: -0.0045 S23: -0.0051 REMARK 3 S31: 0.0431 S32: -0.0387 S33: -0.0019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. SO4,ACT,EDO MODELED ARE PRESENT IN CRYSTALLIZATION/CRYO REMARK 3 CONDITIONS. REMARK 4 REMARK 4 3DCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97932,0.97891 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25591 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 29.148 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : 0.49700 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.0% POLYETHYLENE GLYCOL 4000, 0.2M REMARK 280 AMMONIUM SULFATE, 0.1M SODIUM ACETATE PH 4.6, NANODROP', VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.01750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.01750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.56250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.91350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.56250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.91350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.01750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.56250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.91350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.01750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.56250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.91350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ASP A 21 REMARK 465 LYS A 22 REMARK 465 ILE A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 ILE A 33 REMARK 465 GLN A 34 REMARK 465 GLU A 35 REMARK 465 ALA A 36 REMARK 465 GLY A 112 REMARK 465 GLU A 141 REMARK 465 THR A 142 REMARK 465 PRO A 143 REMARK 465 GLY A 144 REMARK 465 LEU A 145 REMARK 465 GLY A 146 REMARK 465 ALA A 147 REMARK 465 LYS A 148 REMARK 465 ILE A 149 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 465 MSE A 198 REMARK 465 THR A 199 REMARK 465 GLY A 200 REMARK 465 ALA A 201 REMARK 465 THR A 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 37 CG OD1 OD2 REMARK 470 LYS A 62 CD CE NZ REMARK 470 LYS A 82 CD CE NZ REMARK 470 ASN A 114 CG OD1 ND2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 SER A 139 OG REMARK 470 GLN A 140 CG CD OE1 NE2 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 LYS A 174 CE NZ REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 188 CE NZ REMARK 470 VAL A 197 CG1 CG2 REMARK 470 ILE A 203 N CA CB CG1 CG2 CD1 REMARK 470 LYS A 224 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 215 CG - SE - CE ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 39.92 -98.73 REMARK 500 THR A 204 108.90 -49.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 358404 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHH REMARK 999 FOLLOWED BY THE TARGET SEQUENCE. THE CLONED CONSTRUCT CONTAINS REMARK 999 RESIDUES 30-224 OF THE FULL LENGTH PROTEIN. DBREF 3DCZ A 30 224 UNP Q9WY88 Q9WY88_THEMA 30 224 SEQADV 3DCZ MSE A 18 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ GLY A 19 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ SER A 20 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ ASP A 21 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ LYS A 22 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ ILE A 23 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ HIS A 24 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ HIS A 25 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ HIS A 26 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ HIS A 27 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ HIS A 28 UNP Q9WY88 EXPRESSION TAG SEQADV 3DCZ HIS A 29 UNP Q9WY88 EXPRESSION TAG SEQRES 1 A 207 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS LYS SEQRES 2 A 207 GLY LYS ILE GLN GLU ALA ASP ASN ALA ALA LYS LEU SER SEQRES 3 A 207 ALA ILE LYS PHE VAL LEU LYS ASP PRO LEU THR GLY ASP SEQRES 4 A 207 TYR LEU VAL ASP GLU LYS GLU ILE GLU GLU ILE VAL LYS SEQRES 5 A 207 LYS THR GLY ILE GLU THR VAL VAL LEU LYS GLU TYR LYS SEQRES 6 A 207 GLU GLY VAL VAL LEU GLY PRO LEU TYR GLU PHE VAL THR SEQRES 7 A 207 LYS ASP GLY ARG ASN ALA TYR VAL LEU SER GLY TYR ALA SEQRES 8 A 207 PRO GLY PHE GLY GLY ASN VAL THR VAL VAL ALA CYS PHE SEQRES 9 A 207 ILE LYS THR GLU ASP GLY PHE MSE LEU ASN SER VAL ARG SEQRES 10 A 207 VAL ILE ASP TYR SER GLN GLU THR PRO GLY LEU GLY ALA SEQRES 11 A 207 LYS ILE GLY GLU GLU SER ILE GLN ARG ARG PHE PHE PRO SEQRES 12 A 207 VAL PRO PRO GLU GLY LEU LYS ASN GLY LEU ARG VAL ASP SEQRES 13 A 207 LYS ASP ALA GLY LEU PRO LYS GLY SER PRO GLU GLU LEU SEQRES 14 A 207 LYS LYS GLN GLY ILE VAL LYS VAL SER ASP VAL MSE THR SEQRES 15 A 207 GLY ALA THR ILE THR PRO ARG ALA VAL VAL THR ALA LEU SEQRES 16 A 207 ASN LEU MSE TYR ARG TYR LEU GLU GLU VAL SER LYS MODRES 3DCZ MSE A 129 MET SELENOMETHIONINE MODRES 3DCZ MSE A 215 MET SELENOMETHIONINE HET MSE A 129 13 HET MSE A 215 8 HET SO4 A 1 5 HET SO4 A 2 5 HET ACT A 4 4 HET EDO A 3 4 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *145(H2 O) HELIX 1 1 ASN A 38 LEU A 49 1 12 HELIX 2 2 ASP A 60 GLY A 72 1 13 HELIX 3 3 ILE A 154 PHE A 159 5 6 HELIX 4 4 PRO A 162 GLY A 169 1 8 HELIX 5 5 SER A 182 LYS A 188 1 7 HELIX 6 6 THR A 204 LYS A 224 1 21 SHEET 1 A 5 VAL A 76 TYR A 81 0 SHEET 2 A 5 GLY A 84 VAL A 94 -1 O GLY A 88 N VAL A 76 SHEET 3 A 5 ASN A 100 TYR A 107 -1 O SER A 105 N LEU A 87 SHEET 4 A 5 VAL A 115 THR A 124 -1 O LYS A 123 N ASN A 100 SHEET 5 A 5 GLY A 127 ASP A 137 -1 O ILE A 136 N THR A 116 SHEET 1 B 2 ARG A 171 VAL A 172 0 SHEET 2 B 2 ILE A 191 VAL A 192 1 O VAL A 192 N ARG A 171 LINK C PHE A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N LEU A 130 1555 1555 1.33 LINK C LEU A 214 N MSE A 215 1555 1555 1.33 LINK C MSE A 215 N TYR A 216 1555 1555 1.33 CISPEP 1 GLY A 88 PRO A 89 0 1.37 CISPEP 2 PHE A 159 PRO A 160 0 -3.72 SITE 1 AC1 7 TYR A 81 LYS A 82 LYS A 174 ARG A 206 SITE 2 AC1 7 ARG A 217 HOH A 240 HOH A 306 SITE 1 AC2 4 THR A 204 PRO A 205 ARG A 206 HOH A 369 SITE 1 AC3 4 ASN A 100 TYR A 102 LYS A 123 HOH A 343 SITE 1 AC4 7 PHE A 47 LYS A 50 ASP A 51 PRO A 52 SITE 2 AC4 7 ARG A 156 HOH A 227 HOH A 253 CRYST1 91.125 103.827 44.035 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010974 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022709 0.00000