data_3DD2 # _entry.id 3DD2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DD2 pdb_00003dd2 10.2210/pdb3dd2/pdb NDB PR0348 ? ? RCSB RCSB047886 ? ? WWPDB D_1000047886 ? ? # _pdbx_database_status.entry_id 3DD2 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-04 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Long, S.B.' 1 'Sullenger, B.A.' 2 # _citation.id primary _citation.title 'Crystal structure of an RNA aptamer bound to thrombin.' _citation.journal_abbrev Rna _citation.journal_volume 14 _citation.page_first 2504 _citation.page_last 2512 _citation.year 2008 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18971322 _citation.pdbx_database_id_DOI 10.1261/rna.1239308 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Long, S.B.' 1 ? primary 'Long, M.B.' 2 ? primary 'White, R.R.' 3 ? primary 'Sullenger, B.A.' 4 ? # _cell.entry_id 3DD2 _cell.length_a 83.766 _cell.length_b 134.017 _cell.length_c 44.033 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DD2 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thrombin light chain' 3489.881 1 ? ? ? ? 2 polymer nat 'Thrombin heavy chain' 29651.105 1 3.4.21.5 ? ? ? 3 polymer syn 'RNA (26-MER)' 8368.987 1 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 3 ? ? ? ? 5 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 6 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 7 non-polymer syn 'HEXAETHYLENE GLYCOL' 282.331 1 ? ? ? ? 8 non-polymer syn 'ACETIC ACID' 60.052 6 ? ? ? ? 9 water nat water 18.015 253 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GEADCGLRPLFEKKSLEDKTERELLESYID GEADCGLRPLFEKKSLEDKTERELLESYID L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; H ? 3 polyribonucleotide no yes 'GGGAA(CFL)AAAG(CFL)(UFT)GAAG(UFT)A(CFL)(UFT)(UFT)A(CFL)(CFL)(CFL)(DT)' GGGAACAAAGCUGAAGUACUUACCCT B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 ALA n 1 4 ASP n 1 5 CYS n 1 6 GLY n 1 7 LEU n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 PHE n 1 12 GLU n 1 13 LYS n 1 14 LYS n 1 15 SER n 1 16 LEU n 1 17 GLU n 1 18 ASP n 1 19 LYS n 1 20 THR n 1 21 GLU n 1 22 ARG n 1 23 GLU n 1 24 LEU n 1 25 LEU n 1 26 GLU n 1 27 SER n 1 28 TYR n 1 29 ILE n 1 30 ASP n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 3 1 G n 3 2 G n 3 3 G n 3 4 A n 3 5 A n 3 6 CFL n 3 7 A n 3 8 A n 3 9 A n 3 10 G n 3 11 CFL n 3 12 UFT n 3 13 G n 3 14 A n 3 15 A n 3 16 G n 3 17 UFT n 3 18 A n 3 19 CFL n 3 20 UFT n 3 21 UFT n 3 22 A n 3 23 CFL n 3 24 CFL n 3 25 CFL n 3 26 DT n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 GEADCGLRPLFEKKSLEDKTERELLESYID 332 ? 2 UNP THRB_HUMAN P00734 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFG ; 364 ? 3 PDB 3DD2 3DD2 3 GGGAACFLAAAGCFLUFTGAAGUFTACFLUFTUFTACFLCFLCFLT ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DD2 L 1 D 30 L P00734 332 ? 361 ? 1 14 2 2 3DD2 H 1 ? 258 ? P00734 364 ? 621 ? 16 246 3 3 3DD2 B 1 ? 26 ? 3DD2 1 ? 26 ? 1 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CFL 'DNA linking' n '4-amino-1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one' "2'-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" 'C9 H13 F N3 O7 P' 325.188 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 P6G non-polymer . 'HEXAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C12 H26 O7' 282.331 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UFT 'DNA linking' n ;2'-deoxy-2'-fluorouridine 5'-(dihydrogen phosphate) ; ? 'C9 H12 F N2 O8 P' 326.172 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3DD2 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.98 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 58.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG 8000, Magnesium Acetate, Sodium Cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'PEG 8000' ? ? ? 1 2 1 'Magnesium Acetate' ? ? ? 1 3 1 'Sodium Cacodylate' ? ? ? 1 4 2 'PEG 8000' ? ? ? 1 5 2 'Magnesium Acetate' ? ? ? 1 6 2 'Sodium Cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 98 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-04-12 _diffrn_detector.details 'Yale mirrors' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Yale Mirrors' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3DD2 _reflns.B_iso_Wilson_estimate 14.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 50 _reflns.number_all ? _reflns.number_obs 37211 _reflns.percent_possible_obs 93.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value .054 _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 70 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value .354 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DD2 _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 30.350 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF 1922052.125 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 89.000 _refine.ls_number_reflns_obs 35581 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.ls_R_factor_R_work 0.204 _refine.ls_R_factor_R_free 0.254 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1764 _refine.ls_R_factor_R_free_error 0.006 _refine.B_iso_mean 38.600 _refine.solvent_model_param_bsol 55.417 _refine.solvent_model_param_ksol 0.348 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] -13.010 _refine.aniso_B[2][2] 23.880 _refine.aniso_B[3][3] -10.870 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 'PDB ENTRY 1PPB' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.occupancy_max ? _refine.occupancy_min ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3DD2 _refine_analyze.Luzzati_coordinate_error_obs 0.260 _refine_analyze.Luzzati_sigma_a_obs 0.420 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.320 _refine_analyze.Luzzati_sigma_a_free 0.390 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2328 _refine_hist.pdbx_number_atoms_nucleic_acid 537 _refine_hist.pdbx_number_atoms_ligand 96 _refine_hist.number_atoms_solvent 253 _refine_hist.number_atoms_total 3214 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 30.350 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.011 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.400 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 27.100 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 1.150 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.430 1.500 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 2.210 2.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.060 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.020 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 2.020 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 63.900 _refine_ls_shell.number_reflns_R_work 4006 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.330 _refine_ls_shell.R_factor_R_free 0.368 _refine_ls_shell.percent_reflns_R_free 4.300 _refine_ls_shell.number_reflns_R_free 180 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.number_reflns_all 4186 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna-multi-endo.param dna-rna-multi-endo.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 PPACK_patches.par ion.top 'X-RAY DIFFRACTION' 5 ion.param PPACK_patches.top 'X-RAY DIFFRACTION' # _struct.entry_id 3DD2 _struct.title 'Crystal structure of an RNA aptamer bound to human thrombin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DD2 _struct_keywords.pdbx_keywords 'Hydrolase/HYDROLASE INHIBITOR/RNA' _struct_keywords.text 'thrombin, aptamer, RNA, DNA, heparin, exosite, Protease, Serine protease, Hydrolase-Hydrolase inhibitor-RNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 8 ? J N N 8 ? K N N 8 ? L N N 6 ? M N N 8 ? N N N 8 ? O N N 4 ? P N N 4 ? Q N N 9 ? R N N 9 ? S N N 9 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 11 ? SER A 15 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P2 2 THR A 20 B ASP A 30 L THR L 14 ASP L 14 1 ? 11 HELX_P HELX_P3 3 ALA B 41 ? LEU B 45 ? ALA H 55 LEU H 59 1 ? 5 HELX_P HELX_P4 4 PRO B 48 B ASP B 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P5 5 THR B 55 I ASN B 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P6 6 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P7 7 THR B 149 ? GLY B 153 D THR H 149 GLY H 149 5 ? 5 HELX_P HELX_P8 8 GLU B 169 ? SER B 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P9 9 LYS B 191 ? GLY B 195 C LYS H 185 GLY H 186 5 ? 5 HELX_P HELX_P10 10 LEU B 246 ? GLY B 258 ? LEU H 234 GLY H 246 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 2.049 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.039 ? ? covale1 covale one ? E 0G6 . C3 ? ? ? 1_555 B HIS 43 NE2 ? ? H 0G6 1 H HIS 57 1_555 ? ? ? ? ? ? ? 1.485 ? ? covale2 covale none ? E 0G6 . C2 ? ? ? 1_555 B SER 205 OG ? ? H 0G6 1 H SER 195 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale3 covale both ? C A 5 "O3'" ? ? ? 1_555 C CFL 6 P ? ? B A 5 B CFL 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale4 covale one ? C CFL 6 "O3'" ? ? ? 1_555 C A 7 P ? ? B CFL 6 B A 7 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale5 covale both ? C G 10 "O3'" ? ? ? 1_555 C CFL 11 P ? ? B G 10 B CFL 11 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale6 covale one ? C CFL 11 "O3'" ? ? ? 1_555 C UFT 12 P ? ? B CFL 11 B UFT 12 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale7 covale both ? C UFT 12 "O3'" ? ? ? 1_555 C G 13 P ? ? B UFT 12 B G 13 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale8 covale both ? C G 16 "O3'" ? ? ? 1_555 C UFT 17 P ? ? B G 16 B UFT 17 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale9 covale both ? C UFT 17 "O3'" ? ? ? 1_555 C A 18 P ? ? B UFT 17 B A 18 1_555 ? ? ? ? ? ? ? 1.617 ? ? covale10 covale both ? C A 18 "O3'" ? ? ? 1_555 C CFL 19 P ? ? B A 18 B CFL 19 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale11 covale one ? C CFL 19 "O3'" ? ? ? 1_555 C UFT 20 P ? ? B CFL 19 B UFT 20 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale12 covale both ? C UFT 20 "O3'" ? ? ? 1_555 C UFT 21 P ? ? B UFT 20 B UFT 21 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale13 covale both ? C UFT 21 "O3'" ? ? ? 1_555 C A 22 P ? ? B UFT 21 B A 22 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale14 covale both ? C A 22 "O3'" ? ? ? 1_555 C CFL 23 P ? ? B A 22 B CFL 23 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale15 covale one ? C CFL 23 "O3'" ? ? ? 1_555 C CFL 24 P ? ? B CFL 23 B CFL 24 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale16 covale one ? C CFL 24 "O3'" ? ? ? 1_555 C CFL 25 P ? ? B CFL 24 B CFL 25 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale17 covale one ? C CFL 25 "O3'" ? ? ? 1_555 C DT 26 P ? ? B CFL 25 B DT 26 1_555 ? ? ? ? ? ? ? 1.621 ? ? metalc1 metalc ? ? B ARG 233 O ? ? ? 1_555 F MG . MG ? ? H ARG 221 H MG 1002 1_555 ? ? ? ? ? ? ? 2.403 ? ? metalc2 metalc ? ? B LYS 236 O ? ? ? 1_555 F MG . MG ? ? H LYS 224 H MG 1002 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc3 metalc ? ? F MG . MG ? ? ? 1_555 R HOH . O ? ? H MG 1002 H HOH 1012 1_555 ? ? ? ? ? ? ? 2.263 ? ? metalc4 metalc ? ? F MG . MG ? ? ? 1_555 R HOH . O ? ? H MG 1002 H HOH 1037 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc5 metalc ? ? C A 8 OP2 ? ? ? 1_555 L MG . MG ? ? B A 8 B MG 1000 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc6 metalc ? ? C A 9 OP2 ? ? ? 1_555 L MG . MG ? ? B A 9 B MG 1000 1_555 ? ? ? ? ? ? ? 2.053 ? ? metalc7 metalc ? ? L MG . MG ? ? ? 1_555 S HOH . O ? ? B MG 1000 B HOH 1003 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc8 metalc ? ? L MG . MG ? ? ? 1_555 S HOH . O ? ? B MG 1000 B HOH 1006 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc9 metalc ? ? L MG . MG ? ? ? 1_555 S HOH . O ? ? B MG 1000 B HOH 1009 1_555 ? ? ? ? ? ? ? 2.123 ? ? metalc10 metalc ? ? L MG . MG ? ? ? 1_555 S HOH . O ? ? B MG 1000 B HOH 1018 1_555 ? ? ? ? ? ? ? 2.271 ? ? hydrog1 hydrog ? ? C G 1 N1 ? ? ? 1_555 C CFL 25 N3 ? ? B G 1 B CFL 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C G 1 N2 ? ? ? 1_555 C CFL 25 O2 ? ? B G 1 B CFL 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C G 1 O6 ? ? ? 1_555 C CFL 25 N4 ? ? B G 1 B CFL 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 2 N1 ? ? ? 1_555 C CFL 24 N3 ? ? B G 2 B CFL 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C G 2 N2 ? ? ? 1_555 C CFL 24 O2 ? ? B G 2 B CFL 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C G 2 O6 ? ? ? 1_555 C CFL 24 N4 ? ? B G 2 B CFL 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 3 N1 ? ? ? 1_555 C CFL 23 N3 ? ? B G 3 B CFL 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? C G 3 N2 ? ? ? 1_555 C CFL 23 O2 ? ? B G 3 B CFL 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? C G 3 O6 ? ? ? 1_555 C CFL 23 N4 ? ? B G 3 B CFL 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C A 5 N3 ? ? ? 1_555 C A 22 N6 ? ? B A 5 B A 22 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog11 hydrog ? ? C A 7 N1 ? ? ? 1_555 C CFL 19 N4 ? ? B A 7 B CFL 19 1_555 ? ? ? ? ? ? 'A-CFL MISPAIR' ? ? ? hydrog12 hydrog ? ? C A 8 N6 ? ? ? 1_555 C A 18 N7 ? ? B A 8 B A 18 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog13 hydrog ? ? C A 8 N7 ? ? ? 1_555 C A 18 N6 ? ? B A 8 B A 18 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog14 hydrog ? ? C A 8 N1 ? ? ? 1_555 C UFT 21 N3 ? ? B A 8 B UFT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C A 8 N6 ? ? ? 1_555 C UFT 21 O4 ? ? B A 8 B UFT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C A 9 N1 ? ? ? 1_555 C UFT 20 N3 ? ? B A 9 B UFT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C A 9 N6 ? ? ? 1_555 C UFT 20 O4 ? ? B A 9 B UFT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C G 10 N1 ? ? ? 1_555 C CFL 19 N3 ? ? B G 10 B CFL 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C G 10 N2 ? ? ? 1_555 C CFL 19 O2 ? ? B G 10 B CFL 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 10 O6 ? ? ? 1_555 C CFL 19 N4 ? ? B G 10 B CFL 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C CFL 11 N3 ? ? ? 1_555 C G 16 N1 ? ? B CFL 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C CFL 11 N4 ? ? ? 1_555 C G 16 O6 ? ? B CFL 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C CFL 11 O2 ? ? ? 1_555 C G 16 N2 ? ? B CFL 11 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C UFT 12 N3 ? ? ? 1_555 C A 15 N3 ? ? B UFT 12 B A 15 1_555 ? ? ? ? ? ? 'UFT-A PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.23 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 5 ? ASP B 6 ? SER H 20 ASP H 21 A 2 GLN B 161 ? PRO B 166 ? GLN H 156 PRO H 161 A 3 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 A 4 PRO B 208 ? LYS B 212 ? PRO H 198 LYS H 202 A 5 TRP B 219 ? TRP B 227 ? TRP H 207 TRP H 215 A 6 GLY B 238 ? HIS B 242 ? GLY H 226 HIS H 230 A 7 MET B 185 ? ALA B 188 ? MET H 180 ALA H 183 B 1 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 B 2 GLU B 25 ? LEU B 32 ? GLU H 39 LEU H 46 B 3 TRP B 37 ? THR B 40 ? TRP H 51 THR H 54 B 4 ALA B 101 ? LEU B 105 ? ALA H 104 LEU H 108 B 5 LYS B 77 ? ILE B 86 ? LYS H 81 ILE H 90 B 6 LEU B 59 ? ILE B 63 ? LEU H 64 ILE H 68 B 7 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 C 1 LEU B 46 ? TYR B 47 A LEU H 60 TYR H 60 C 2 LYS B 52 F ASN B 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 5 ? N SER H 20 O VAL B 162 ? O VAL H 157 A 2 3 O LEU B 165 ? O LEU H 160 N GLY B 136 ? N GLY H 136 A 3 4 N ARG B 137 ? N ARG H 137 O VAL B 210 ? O VAL H 200 A 4 5 N MET B 211 ? N MET H 201 O TYR B 220 ? O TYR H 208 A 5 6 N TRP B 227 ? N TRP H 215 O PHE B 239 ? O PHE H 227 A 6 7 O TYR B 240 ? O TYR H 228 N PHE B 186 ? N PHE H 181 B 1 2 N ARG B 20 ? N ARG H 35 O GLU B 25 ? O GLU H 39 B 2 3 N SER B 31 ? N SER H 45 O LEU B 39 ? O LEU H 53 B 3 4 N VAL B 38 ? N VAL H 52 O MET B 103 ? O MET H 106 B 4 5 O LYS B 104 ? O LYS H 107 N GLU B 82 ? N GLU H 86 B 5 6 O LYS B 77 ? O LYS H 81 N ILE B 63 ? N ILE H 68 B 6 7 O LEU B 60 ? O LEU H 65 N PHE B 19 ? N PHE H 34 C 1 2 N TYR B 47 A N TYR H 60 O LYS B 52 F O LYS H 60 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software L PEG 305 ? 7 'BINDING SITE FOR RESIDUE PEG L 305' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MG B1000' AC3 Software H 0G6 1 ? 17 'BINDING SITE FOR RESIDUE 0G6 H 1' AC4 Software B ACY 151 ? 3 'BINDING SITE FOR RESIDUE ACY B 151' AC5 Software B ACY 152 ? 3 'BINDING SITE FOR RESIDUE ACY B 152' AC6 Software B PEG 103 ? 3 'BINDING SITE FOR RESIDUE PEG B 103' AC7 Software B PEG 104 ? 6 'BINDING SITE FOR RESIDUE PEG B 104' AC8 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG H1002' AC9 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE P6G H1003' BC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACY H1004' BC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACY H1005' BC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ACY H1006' BC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ACY H1007' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 A C 14 ? A B 14 . ? 1_555 ? 2 AC1 7 GLN B 131 ? GLN H 131 . ? 1_555 ? 3 AC1 7 ALA B 132 ? ALA H 132 . ? 1_555 ? 4 AC1 7 TYR B 134 ? TYR H 134 . ? 1_555 ? 5 AC1 7 ILE A 29 K ILE L 14 . ? 1_555 ? 6 AC1 7 ASP A 30 L ASP L 14 . ? 1_555 ? 7 AC1 7 HOH Q . ? HOH L 209 . ? 1_555 ? 8 AC2 7 A C 7 ? A B 7 . ? 1_555 ? 9 AC2 7 A C 8 ? A B 8 . ? 1_555 ? 10 AC2 7 A C 9 ? A B 9 . ? 1_555 ? 11 AC2 7 HOH S . ? HOH B 1003 . ? 1_555 ? 12 AC2 7 HOH S . ? HOH B 1006 . ? 1_555 ? 13 AC2 7 HOH S . ? HOH B 1009 . ? 1_555 ? 14 AC2 7 HOH S . ? HOH B 1018 . ? 1_555 ? 15 AC3 17 HIS B 43 ? HIS H 57 . ? 1_555 ? 16 AC3 17 TYR B 47 A TYR H 60 . ? 1_555 ? 17 AC3 17 LEU B 96 ? LEU H 99 . ? 1_555 ? 18 AC3 17 ASP B 199 ? ASP H 189 . ? 1_555 ? 19 AC3 17 ALA B 200 ? ALA H 190 . ? 1_555 ? 20 AC3 17 GLY B 203 ? GLY H 193 . ? 1_555 ? 21 AC3 17 SER B 205 ? SER H 195 . ? 1_555 ? 22 AC3 17 SER B 226 ? SER H 214 . ? 1_555 ? 23 AC3 17 TRP B 227 ? TRP H 215 . ? 1_555 ? 24 AC3 17 GLY B 228 ? GLY H 216 . ? 1_555 ? 25 AC3 17 GLY B 230 ? GLY H 219 . ? 1_555 ? 26 AC3 17 GLY B 238 ? GLY H 226 . ? 1_555 ? 27 AC3 17 HOH R . ? HOH H 247 . ? 1_555 ? 28 AC3 17 HOH R . ? HOH H 248 . ? 1_555 ? 29 AC3 17 HOH R . ? HOH H 249 . ? 1_555 ? 30 AC3 17 HOH R . ? HOH H 250 . ? 1_555 ? 31 AC3 17 HOH R . ? HOH H 1024 . ? 1_555 ? 32 AC4 3 A C 4 ? A B 4 . ? 1_555 ? 33 AC4 3 A C 5 ? A B 5 . ? 1_555 ? 34 AC4 3 CFL C 23 ? CFL B 23 . ? 1_555 ? 35 AC5 3 G C 2 ? G B 2 . ? 1_555 ? 36 AC5 3 G C 3 ? G B 3 . ? 1_555 ? 37 AC5 3 HOH S . ? HOH B 1017 . ? 1_555 ? 38 AC6 3 G C 3 ? G B 3 . ? 1_555 ? 39 AC6 3 CFL C 23 ? CFL B 23 . ? 1_555 ? 40 AC6 3 CFL C 24 ? CFL B 24 . ? 1_555 ? 41 AC7 6 CFL C 11 ? CFL B 11 . ? 1_555 ? 42 AC7 6 CFL C 19 ? CFL B 19 . ? 1_555 ? 43 AC7 6 UFT C 20 ? UFT B 20 . ? 1_555 ? 44 AC7 6 HOH S . ? HOH B 1021 . ? 1_555 ? 45 AC7 6 HOH S . ? HOH B 1044 . ? 1_555 ? 46 AC7 6 ALA B 150 A ALA H 149 . ? 4_443 ? 47 AC8 6 ARG B 233 ? ARG H 221 . ? 1_555 ? 48 AC8 6 LYS B 236 ? LYS H 224 . ? 1_555 ? 49 AC8 6 HOH R . ? HOH H 1012 . ? 1_555 ? 50 AC8 6 HOH R . ? HOH H 1032 . ? 1_555 ? 51 AC8 6 HOH R . ? HOH H 1037 . ? 1_555 ? 52 AC8 6 HOH R . ? HOH H 1047 . ? 1_555 ? 53 AC9 11 GLN B 24 ? GLN H 38 . ? 1_555 ? 54 AC9 11 LEU B 60 ? LEU H 65 . ? 1_555 ? 55 AC9 11 TYR B 71 ? TYR H 76 . ? 1_555 ? 56 AC9 11 ILE B 78 ? ILE H 82 . ? 1_555 ? 57 AC9 11 SER B 128 B SER H 129 . ? 4_544 ? 58 AC9 11 LEU B 129 C LEU H 129 . ? 4_544 ? 59 AC9 11 PRO B 214 ? PRO H 204 . ? 4_544 ? 60 AC9 11 PHE B 215 A PHE H 204 . ? 4_544 ? 61 AC9 11 HOH R . ? HOH H 1127 . ? 1_555 ? 62 AC9 11 HOH R . ? HOH H 1135 . ? 1_555 ? 63 AC9 11 HOH R . ? HOH H 1137 . ? 1_555 ? 64 BC1 2 ASN B 53 G ASN H 60 . ? 1_555 ? 65 BC1 2 ACY K . ? ACY H 1007 . ? 1_555 ? 66 BC2 2 GLY B 4 ? GLY H 19 . ? 1_555 ? 67 BC2 2 HOH R . ? HOH H 1153 . ? 1_555 ? 68 BC3 7 PHE B 111 ? PHE H 114 . ? 1_554 ? 69 BC3 7 PRO B 117 ? PRO H 120 . ? 1_554 ? 70 BC3 7 ARG B 178 ? ARG H 173 . ? 1_555 ? 71 BC3 7 HOH R . ? HOH H 1062 . ? 1_555 ? 72 BC3 7 HOH R . ? HOH H 1087 . ? 1_554 ? 73 BC3 7 ASP A 4 A ASP L 1 . ? 1_554 ? 74 BC3 7 ALA A 3 B ALA L 1 . ? 1_554 ? 75 BC4 2 ASN B 53 G ASN H 60 . ? 1_555 ? 76 BC4 2 ACY H . ? ACY H 1004 . ? 1_555 ? # _database_PDB_matrix.entry_id 3DD2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3DD2 _atom_sites.fract_transf_matrix[1][1] 0.011938 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007462 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022710 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY L D n A 1 2 GLU 2 1 1 GLU GLU L C n A 1 3 ALA 3 1 1 ALA ALA L B n A 1 4 ASP 4 1 1 ASP ASP L A n A 1 5 CYS 5 1 1 CYS CYS L . n A 1 6 GLY 6 2 2 GLY GLY L . n A 1 7 LEU 7 3 3 LEU LEU L . n A 1 8 ARG 8 4 4 ARG ARG L . n A 1 9 PRO 9 5 5 PRO PRO L . n A 1 10 LEU 10 6 6 LEU LEU L . n A 1 11 PHE 11 7 7 PHE PHE L . n A 1 12 GLU 12 8 8 GLU GLU L . n A 1 13 LYS 13 9 9 LYS LYS L . n A 1 14 LYS 14 10 10 LYS LYS L . n A 1 15 SER 15 11 11 SER SER L . n A 1 16 LEU 16 12 12 LEU LEU L . n A 1 17 GLU 17 13 13 GLU GLU L . n A 1 18 ASP 18 14 14 ASP ASP L . n A 1 19 LYS 19 14 14 LYS LYS L A n A 1 20 THR 20 14 14 THR THR L B n A 1 21 GLU 21 14 14 GLU GLU L C n A 1 22 ARG 22 14 14 ARG ARG L D n A 1 23 GLU 23 14 14 GLU GLU L E n A 1 24 LEU 24 14 14 LEU LEU L F n A 1 25 LEU 25 14 14 LEU LEU L G n A 1 26 GLU 26 14 14 GLU GLU L H n A 1 27 SER 27 14 14 SER SER L I n A 1 28 TYR 28 14 14 TYR TYR L J n A 1 29 ILE 29 14 14 ILE ILE L K n A 1 30 ASP 30 14 14 ASP ASP L L n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 148 148 TRP TRP H . n B 2 149 THR 149 149 149 THR THR H . n B 2 150 ALA 150 149 149 ALA ALA H A n B 2 151 ASN 151 149 149 ASN ASN H B n B 2 152 VAL 152 149 149 VAL VAL H C n B 2 153 GLY 153 149 149 GLY GLY H D n B 2 154 LYS 154 149 149 LYS LYS H E n B 2 155 GLY 155 150 150 GLY GLY H . n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H A n B 2 233 ARG 233 221 221 ARG ARG H . n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 246 GLY GLY H . n C 3 1 G 1 1 1 G G B . n C 3 2 G 2 2 2 G G B . n C 3 3 G 3 3 3 G G B . n C 3 4 A 4 4 4 A A B . n C 3 5 A 5 5 5 A A B . n C 3 6 CFL 6 6 6 CFL CFL B . n C 3 7 A 7 7 7 A A B . n C 3 8 A 8 8 8 A A B . n C 3 9 A 9 9 9 A A B . n C 3 10 G 10 10 10 G G B . n C 3 11 CFL 11 11 11 CFL CFL B . n C 3 12 UFT 12 12 12 UFT UFT B . n C 3 13 G 13 13 13 G G B . n C 3 14 A 14 14 14 A A B . n C 3 15 A 15 15 15 A A B . n C 3 16 G 16 16 16 G G B . n C 3 17 UFT 17 17 17 UFT UFT B . n C 3 18 A 18 18 18 A A B . n C 3 19 CFL 19 19 19 CFL CFL B . n C 3 20 UFT 20 20 20 UFT UFT B . n C 3 21 UFT 21 21 21 UFT UFT B . n C 3 22 A 22 22 22 A A B . n C 3 23 CFL 23 23 23 CFL CFL B . n C 3 24 CFL 24 24 24 CFL CFL B . n C 3 25 CFL 25 25 25 CFL CFL B . n C 3 26 DT 26 26 26 DT T B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PEG 1 305 305 PEG PEG L . E 5 0G6 1 1 1 0G6 0G6 H . F 6 MG 1 1002 1002 MG MG H . G 7 P6G 1 1003 1003 P6G P6G H . H 8 ACY 1 1004 1004 ACY ACY H . I 8 ACY 1 1005 1005 ACY ACY H . J 8 ACY 1 1006 1006 ACY ACY H . K 8 ACY 1 1007 1007 ACY ACY H . L 6 MG 1 1000 1000 MG MG B . M 8 ACY 1 151 151 ACY ACY B . N 8 ACY 1 152 152 ACY ACY B . O 4 PEG 1 103 103 PEG PEG B . P 4 PEG 1 104 104 PEG PEG B . Q 9 HOH 1 39 39 HOH HOH L . Q 9 HOH 2 41 41 HOH HOH L . Q 9 HOH 3 61 61 HOH HOH L . Q 9 HOH 4 63 63 HOH HOH L . Q 9 HOH 5 76 76 HOH HOH L . Q 9 HOH 6 124 124 HOH HOH L . Q 9 HOH 7 133 133 HOH HOH L . Q 9 HOH 8 142 142 HOH HOH L . Q 9 HOH 9 146 146 HOH HOH L . Q 9 HOH 10 179 179 HOH HOH L . Q 9 HOH 11 187 187 HOH HOH L . Q 9 HOH 12 199 199 HOH HOH L . Q 9 HOH 13 209 209 HOH HOH L . Q 9 HOH 14 211 211 HOH HOH L . Q 9 HOH 15 224 224 HOH HOH L . Q 9 HOH 16 226 226 HOH HOH L . Q 9 HOH 17 242 242 HOH HOH L . Q 9 HOH 18 255 255 HOH HOH L . Q 9 HOH 19 281 281 HOH HOH L . Q 9 HOH 20 284 284 HOH HOH L . Q 9 HOH 21 303 303 HOH HOH L . Q 9 HOH 22 363 363 HOH HOH L . Q 9 HOH 23 375 375 HOH HOH L . R 9 HOH 1 247 247 HOH HOH H . R 9 HOH 2 248 248 HOH HOH H . R 9 HOH 3 249 249 HOH HOH H . R 9 HOH 4 250 250 HOH HOH H . R 9 HOH 5 1008 1008 HOH HOH H . R 9 HOH 6 1009 1009 HOH HOH H . R 9 HOH 7 1010 1010 HOH HOH H . R 9 HOH 8 1011 1011 HOH HOH H . R 9 HOH 9 1012 1012 HOH HOH H . R 9 HOH 10 1013 1013 HOH HOH H . R 9 HOH 11 1014 1014 HOH HOH H . R 9 HOH 12 1015 1015 HOH HOH H . R 9 HOH 13 1016 1016 HOH HOH H . R 9 HOH 14 1017 1017 HOH HOH H . R 9 HOH 15 1018 1018 HOH HOH H . R 9 HOH 16 1019 1019 HOH HOH H . R 9 HOH 17 1020 1020 HOH HOH H . R 9 HOH 18 1021 1021 HOH HOH H . R 9 HOH 19 1022 1022 HOH HOH H . R 9 HOH 20 1023 1023 HOH HOH H . R 9 HOH 21 1024 1024 HOH HOH H . R 9 HOH 22 1025 1025 HOH HOH H . R 9 HOH 23 1026 1026 HOH HOH H . R 9 HOH 24 1027 1027 HOH HOH H . R 9 HOH 25 1028 1028 HOH HOH H . R 9 HOH 26 1029 1029 HOH HOH H . R 9 HOH 27 1030 1030 HOH HOH H . R 9 HOH 28 1031 1031 HOH HOH H . R 9 HOH 29 1032 1032 HOH HOH H . R 9 HOH 30 1033 1033 HOH HOH H . R 9 HOH 31 1034 1034 HOH HOH H . R 9 HOH 32 1035 1035 HOH HOH H . R 9 HOH 33 1036 1036 HOH HOH H . R 9 HOH 34 1037 1037 HOH HOH H . R 9 HOH 35 1038 1038 HOH HOH H . R 9 HOH 36 1039 1039 HOH HOH H . R 9 HOH 37 1040 1040 HOH HOH H . R 9 HOH 38 1041 1041 HOH HOH H . R 9 HOH 39 1042 1042 HOH HOH H . R 9 HOH 40 1043 1043 HOH HOH H . R 9 HOH 41 1044 1044 HOH HOH H . R 9 HOH 42 1045 1045 HOH HOH H . R 9 HOH 43 1046 1046 HOH HOH H . R 9 HOH 44 1047 1047 HOH HOH H . R 9 HOH 45 1048 1048 HOH HOH H . R 9 HOH 46 1049 1049 HOH HOH H . R 9 HOH 47 1050 1050 HOH HOH H . R 9 HOH 48 1051 1051 HOH HOH H . R 9 HOH 49 1052 1052 HOH HOH H . R 9 HOH 50 1053 1053 HOH HOH H . R 9 HOH 51 1054 1054 HOH HOH H . R 9 HOH 52 1055 1055 HOH HOH H . R 9 HOH 53 1056 1056 HOH HOH H . R 9 HOH 54 1057 1057 HOH HOH H . R 9 HOH 55 1058 1058 HOH HOH H . R 9 HOH 56 1059 1059 HOH HOH H . R 9 HOH 57 1060 1060 HOH HOH H . R 9 HOH 58 1061 1061 HOH HOH H . R 9 HOH 59 1062 1062 HOH HOH H . R 9 HOH 60 1063 1063 HOH HOH H . R 9 HOH 61 1064 1064 HOH HOH H . R 9 HOH 62 1065 1065 HOH HOH H . R 9 HOH 63 1066 1066 HOH HOH H . R 9 HOH 64 1067 1067 HOH HOH H . R 9 HOH 65 1068 1068 HOH HOH H . R 9 HOH 66 1069 1069 HOH HOH H . R 9 HOH 67 1070 1070 HOH HOH H . R 9 HOH 68 1071 1071 HOH HOH H . R 9 HOH 69 1072 1072 HOH HOH H . R 9 HOH 70 1073 1073 HOH HOH H . R 9 HOH 71 1074 1074 HOH HOH H . R 9 HOH 72 1075 1075 HOH HOH H . R 9 HOH 73 1076 1076 HOH HOH H . R 9 HOH 74 1077 1077 HOH HOH H . R 9 HOH 75 1078 1078 HOH HOH H . R 9 HOH 76 1079 1079 HOH HOH H . R 9 HOH 77 1080 1080 HOH HOH H . R 9 HOH 78 1081 1081 HOH HOH H . R 9 HOH 79 1082 1082 HOH HOH H . R 9 HOH 80 1083 1083 HOH HOH H . R 9 HOH 81 1084 1084 HOH HOH H . R 9 HOH 82 1085 1085 HOH HOH H . R 9 HOH 83 1086 1086 HOH HOH H . R 9 HOH 84 1087 1087 HOH HOH H . R 9 HOH 85 1088 1088 HOH HOH H . R 9 HOH 86 1089 1089 HOH HOH H . R 9 HOH 87 1090 1090 HOH HOH H . R 9 HOH 88 1091 1091 HOH HOH H . R 9 HOH 89 1092 1092 HOH HOH H . R 9 HOH 90 1093 1093 HOH HOH H . R 9 HOH 91 1094 1094 HOH HOH H . R 9 HOH 92 1095 1095 HOH HOH H . R 9 HOH 93 1096 1096 HOH HOH H . R 9 HOH 94 1097 1097 HOH HOH H . R 9 HOH 95 1098 1098 HOH HOH H . R 9 HOH 96 1099 1099 HOH HOH H . R 9 HOH 97 1100 1100 HOH HOH H . R 9 HOH 98 1101 1101 HOH HOH H . R 9 HOH 99 1102 1102 HOH HOH H . R 9 HOH 100 1103 1103 HOH HOH H . R 9 HOH 101 1104 1104 HOH HOH H . R 9 HOH 102 1105 1105 HOH HOH H . R 9 HOH 103 1106 1106 HOH HOH H . R 9 HOH 104 1107 1107 HOH HOH H . R 9 HOH 105 1108 1108 HOH HOH H . R 9 HOH 106 1109 1109 HOH HOH H . R 9 HOH 107 1110 1110 HOH HOH H . R 9 HOH 108 1111 1111 HOH HOH H . R 9 HOH 109 1112 1112 HOH HOH H . R 9 HOH 110 1113 1113 HOH HOH H . R 9 HOH 111 1114 1114 HOH HOH H . R 9 HOH 112 1115 1115 HOH HOH H . R 9 HOH 113 1116 1116 HOH HOH H . R 9 HOH 114 1117 1117 HOH HOH H . R 9 HOH 115 1118 1118 HOH HOH H . R 9 HOH 116 1119 1119 HOH HOH H . R 9 HOH 117 1120 1120 HOH HOH H . R 9 HOH 118 1121 1121 HOH HOH H . R 9 HOH 119 1122 1122 HOH HOH H . R 9 HOH 120 1123 1123 HOH HOH H . R 9 HOH 121 1124 1124 HOH HOH H . R 9 HOH 122 1125 1125 HOH HOH H . R 9 HOH 123 1126 1126 HOH HOH H . R 9 HOH 124 1127 1127 HOH HOH H . R 9 HOH 125 1128 1128 HOH HOH H . R 9 HOH 126 1129 1129 HOH HOH H . R 9 HOH 127 1130 1130 HOH HOH H . R 9 HOH 128 1131 1131 HOH HOH H . R 9 HOH 129 1132 1132 HOH HOH H . R 9 HOH 130 1133 1133 HOH HOH H . R 9 HOH 131 1134 1134 HOH HOH H . R 9 HOH 132 1135 1135 HOH HOH H . R 9 HOH 133 1136 1136 HOH HOH H . R 9 HOH 134 1137 1137 HOH HOH H . R 9 HOH 135 1138 1138 HOH HOH H . R 9 HOH 136 1139 1139 HOH HOH H . R 9 HOH 137 1140 1140 HOH HOH H . R 9 HOH 138 1141 1141 HOH HOH H . R 9 HOH 139 1142 1142 HOH HOH H . R 9 HOH 140 1143 1143 HOH HOH H . R 9 HOH 141 1144 1144 HOH HOH H . R 9 HOH 142 1145 1145 HOH HOH H . R 9 HOH 143 1146 1146 HOH HOH H . R 9 HOH 144 1147 1147 HOH HOH H . R 9 HOH 145 1148 1148 HOH HOH H . R 9 HOH 146 1149 1149 HOH HOH H . R 9 HOH 147 1150 1150 HOH HOH H . R 9 HOH 148 1151 1151 HOH HOH H . R 9 HOH 149 1152 1152 HOH HOH H . R 9 HOH 150 1153 1153 HOH HOH H . R 9 HOH 151 1154 1154 HOH HOH H . R 9 HOH 152 1155 1155 HOH HOH H . R 9 HOH 153 1156 1156 HOH HOH H . R 9 HOH 154 1157 1157 HOH HOH H . R 9 HOH 155 1158 1158 HOH HOH H . R 9 HOH 156 1159 1159 HOH HOH H . R 9 HOH 157 1160 1160 HOH HOH H . R 9 HOH 158 1161 1161 HOH HOH H . R 9 HOH 159 1162 1162 HOH HOH H . R 9 HOH 160 1163 1163 HOH HOH H . R 9 HOH 161 1164 1164 HOH HOH H . R 9 HOH 162 1165 1165 HOH HOH H . R 9 HOH 163 1166 1166 HOH HOH H . R 9 HOH 164 1167 1167 HOH HOH H . R 9 HOH 165 1168 1168 HOH HOH H . R 9 HOH 166 1169 1169 HOH HOH H . R 9 HOH 167 1170 1170 HOH HOH H . R 9 HOH 168 1171 1171 HOH HOH H . R 9 HOH 169 1172 1172 HOH HOH H . R 9 HOH 170 1173 1173 HOH HOH H . R 9 HOH 171 1174 1174 HOH HOH H . R 9 HOH 172 1175 1175 HOH HOH H . R 9 HOH 173 1176 1176 HOH HOH H . R 9 HOH 174 1177 1177 HOH HOH H . R 9 HOH 175 1178 1178 HOH HOH H . R 9 HOH 176 1179 1179 HOH HOH H . R 9 HOH 177 1180 1180 HOH HOH H . R 9 HOH 178 1181 1181 HOH HOH H . R 9 HOH 179 1182 1182 HOH HOH H . R 9 HOH 180 1183 1183 HOH HOH H . R 9 HOH 181 1184 1184 HOH HOH H . R 9 HOH 182 1185 1185 HOH HOH H . R 9 HOH 183 1186 1186 HOH HOH H . R 9 HOH 184 1187 1187 HOH HOH H . R 9 HOH 185 1188 1188 HOH HOH H . R 9 HOH 186 1189 1189 HOH HOH H . S 9 HOH 1 1001 1001 HOH HOH B . S 9 HOH 2 1002 1002 HOH HOH B . S 9 HOH 3 1003 1003 HOH HOH B . S 9 HOH 4 1004 1004 HOH HOH B . S 9 HOH 5 1005 1005 HOH HOH B . S 9 HOH 6 1006 1006 HOH HOH B . S 9 HOH 7 1007 1007 HOH HOH B . S 9 HOH 8 1008 1008 HOH HOH B . S 9 HOH 9 1009 1009 HOH HOH B . S 9 HOH 10 1010 1010 HOH HOH B . S 9 HOH 11 1011 1011 HOH HOH B . S 9 HOH 12 1012 1012 HOH HOH B . S 9 HOH 13 1013 1013 HOH HOH B . S 9 HOH 14 1014 1014 HOH HOH B . S 9 HOH 15 1015 1015 HOH HOH B . S 9 HOH 16 1016 1016 HOH HOH B . S 9 HOH 17 1017 1017 HOH HOH B . S 9 HOH 18 1018 1018 HOH HOH B . S 9 HOH 19 1019 1019 HOH HOH B . S 9 HOH 20 1020 1020 HOH HOH B . S 9 HOH 21 1021 1021 HOH HOH B . S 9 HOH 22 1022 1022 HOH HOH B . S 9 HOH 23 1023 1023 HOH HOH B . S 9 HOH 24 1024 1024 HOH HOH B . S 9 HOH 25 1025 1025 HOH HOH B . S 9 HOH 26 1026 1026 HOH HOH B . S 9 HOH 27 1027 1027 HOH HOH B . S 9 HOH 28 1028 1028 HOH HOH B . S 9 HOH 29 1029 1029 HOH HOH B . S 9 HOH 30 1030 1030 HOH HOH B . S 9 HOH 31 1031 1031 HOH HOH B . S 9 HOH 32 1032 1032 HOH HOH B . S 9 HOH 33 1033 1033 HOH HOH B . S 9 HOH 34 1034 1034 HOH HOH B . S 9 HOH 35 1035 1035 HOH HOH B . S 9 HOH 36 1036 1036 HOH HOH B . S 9 HOH 37 1037 1037 HOH HOH B . S 9 HOH 38 1038 1038 HOH HOH B . S 9 HOH 39 1039 1039 HOH HOH B . S 9 HOH 40 1040 1040 HOH HOH B . S 9 HOH 41 1041 1041 HOH HOH B . S 9 HOH 42 1042 1042 HOH HOH B . S 9 HOH 43 1043 1043 HOH HOH B . S 9 HOH 44 1044 1044 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id E # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C CFL 6 B CFL 6 ? DC ? 2 C CFL 11 B CFL 11 ? DC ? 3 C UFT 12 B UFT 12 ? DU ? 4 C UFT 17 B UFT 17 ? DU ? 5 C CFL 19 B CFL 19 ? DC ? 6 C UFT 20 B UFT 20 ? DU ? 7 C UFT 21 B UFT 21 ? DU ? 8 C CFL 23 B CFL 23 ? DC ? 9 C CFL 24 B CFL 24 ? DC ? 10 C CFL 25 B CFL 25 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B ARG 233 ? H ARG 221 ? 1_555 MG ? F MG . ? H MG 1002 ? 1_555 O ? B LYS 236 ? H LYS 224 ? 1_555 93.2 ? 2 O ? B ARG 233 ? H ARG 221 ? 1_555 MG ? F MG . ? H MG 1002 ? 1_555 O ? R HOH . ? H HOH 1012 ? 1_555 104.0 ? 3 O ? B LYS 236 ? H LYS 224 ? 1_555 MG ? F MG . ? H MG 1002 ? 1_555 O ? R HOH . ? H HOH 1012 ? 1_555 161.8 ? 4 O ? B ARG 233 ? H ARG 221 ? 1_555 MG ? F MG . ? H MG 1002 ? 1_555 O ? R HOH . ? H HOH 1037 ? 1_555 96.5 ? 5 O ? B LYS 236 ? H LYS 224 ? 1_555 MG ? F MG . ? H MG 1002 ? 1_555 O ? R HOH . ? H HOH 1037 ? 1_555 80.1 ? 6 O ? R HOH . ? H HOH 1012 ? 1_555 MG ? F MG . ? H MG 1002 ? 1_555 O ? R HOH . ? H HOH 1037 ? 1_555 103.3 ? 7 OP2 ? C A 8 ? B A 8 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 OP2 ? C A 9 ? B A 9 ? 1_555 85.6 ? 8 OP2 ? C A 8 ? B A 8 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1003 ? 1_555 94.6 ? 9 OP2 ? C A 9 ? B A 9 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1003 ? 1_555 172.4 ? 10 OP2 ? C A 8 ? B A 8 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1006 ? 1_555 176.0 ? 11 OP2 ? C A 9 ? B A 9 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1006 ? 1_555 91.0 ? 12 O ? S HOH . ? B HOH 1003 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1006 ? 1_555 89.0 ? 13 OP2 ? C A 8 ? B A 8 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1009 ? 1_555 95.8 ? 14 OP2 ? C A 9 ? B A 9 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1009 ? 1_555 86.1 ? 15 O ? S HOH . ? B HOH 1003 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1009 ? 1_555 86.3 ? 16 O ? S HOH . ? B HOH 1006 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1009 ? 1_555 86.0 ? 17 OP2 ? C A 8 ? B A 8 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1018 ? 1_555 94.3 ? 18 OP2 ? C A 9 ? B A 9 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1018 ? 1_555 93.0 ? 19 O ? S HOH . ? B HOH 1003 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1018 ? 1_555 94.5 ? 20 O ? S HOH . ? B HOH 1006 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1018 ? 1_555 83.8 ? 21 O ? S HOH . ? B HOH 1009 ? 1_555 MG ? L MG . ? B MG 1000 ? 1_555 O ? S HOH . ? B HOH 1018 ? 1_555 169.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-02-27 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' 'Structure summary' 6 2 'Structure model' 'Version format compliance' 7 3 'Structure model' Other 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Data collection' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.value' 21 5 'Structure model' '_struct_conn.conn_type_id' 22 5 'Structure model' '_struct_conn.id' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 39 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS 1.1 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 1 PDB_EXTRACT 3.005 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 DENZO . ? ? ? ? 'data reduction' ? ? ? 3 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 4 CNS . ? ? ? ? phasing ? ? ? 5 # _pdbx_entry_details.entry_id 3DD2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;THE INHIBITOR IS COVALENTLY CONNECTED TO ACTIVE_SITE RESIDUES: 1) VIA A HEMIKETAL GROUP TO OG SER H 195, 2) VIA A METHYLENE GROUP TO NE2 HIS H 57. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA L 1 B ? 44.35 -143.43 2 1 PHE L 7 ? ? -137.20 -89.50 3 1 TYR H 60 A ? -154.70 84.03 4 1 ASN H 60 G ? -161.25 85.97 5 1 HIS H 71 ? ? -121.71 -61.53 6 1 GLU H 77 ? ? -106.34 78.02 7 1 ILE H 79 ? ? -123.73 -65.73 8 1 SER H 214 ? ? -122.06 -58.66 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A B 7 ? ? 0.059 'SIDE CHAIN' 2 1 A B 9 ? ? 0.056 'SIDE CHAIN' 3 1 G B 13 ? ? 0.071 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 "C2'" ? B CFL 6 ? 'WRONG HAND' . 2 1 "C2'" ? B CFL 11 ? 'WRONG HAND' . 3 1 "C2'" ? B CFL 19 ? 'WRONG HAND' . 4 1 "C2'" ? B CFL 23 ? 'WRONG HAND' . 5 1 "C2'" ? B CFL 24 ? 'WRONG HAND' . 6 1 "C2'" ? B CFL 25 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DT 26 ? "C5'" ? C DT 26 "C5'" 2 1 Y 1 B DT 26 ? "C4'" ? C DT 26 "C4'" 3 1 Y 1 B DT 26 ? "O4'" ? C DT 26 "O4'" 4 1 Y 1 B DT 26 ? "C3'" ? C DT 26 "C3'" 5 1 Y 1 B DT 26 ? "O3'" ? C DT 26 "O3'" 6 1 Y 1 B DT 26 ? "C2'" ? C DT 26 "C2'" 7 1 Y 1 B DT 26 ? "C1'" ? C DT 26 "C1'" 8 1 Y 1 B DT 26 ? N1 ? C DT 26 N1 9 1 Y 1 B DT 26 ? C2 ? C DT 26 C2 10 1 Y 1 B DT 26 ? O2 ? C DT 26 O2 11 1 Y 1 B DT 26 ? N3 ? C DT 26 N3 12 1 Y 1 B DT 26 ? C4 ? C DT 26 C4 13 1 Y 1 B DT 26 ? O4 ? C DT 26 O4 14 1 Y 1 B DT 26 ? C5 ? C DT 26 C5 15 1 Y 1 B DT 26 ? C7 ? C DT 26 C7 16 1 Y 1 B DT 26 ? C6 ? C DT 26 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0G6 N N N N 1 0G6 CA C N R 2 0G6 C C N N 3 0G6 O O N N 4 0G6 CB C N N 5 0G6 CG C Y N 6 0G6 CD1 C Y N 7 0G6 CD2 C Y N 8 0G6 CE1 C Y N 9 0G6 CE2 C Y N 10 0G6 CZ C Y N 11 0G6 N1 N N N 12 0G6 CA1 C N S 13 0G6 C1 C N N 14 0G6 O1 O N N 15 0G6 CB1 C N N 16 0G6 CG1 C N N 17 0G6 CD C N N 18 0G6 N2 N N N 19 0G6 CA2 C N S 20 0G6 C2 C N S 21 0G6 O2 O N N 22 0G6 CB2 C N N 23 0G6 CG2 C N N 24 0G6 CD3 C N N 25 0G6 NE N N N 26 0G6 CZ1 C N N 27 0G6 NH1 N N N 28 0G6 NH2 N N N 29 0G6 C3 C N N 30 0G6 CL CL N N 31 0G6 H H N N 32 0G6 H2 H N N 33 0G6 HA H N N 34 0G6 HB2 H N N 35 0G6 HB3 H N N 36 0G6 HD1 H N N 37 0G6 HD2 H N N 38 0G6 HE1 H N N 39 0G6 HE2 H N N 40 0G6 HZ H N N 41 0G6 HA1 H N N 42 0G6 HB21 H N N 43 0G6 HB31 H N N 44 0G6 HG2 H N N 45 0G6 HG3 H N N 46 0G6 HD21 H N N 47 0G6 HD3 H N N 48 0G6 H1 H N N 49 0G6 HA2 H N N 50 0G6 HB22 H N N 51 0G6 HB32 H N N 52 0G6 HG21 H N N 53 0G6 HG31 H N N 54 0G6 HD22 H N N 55 0G6 HD31 H N N 56 0G6 HE H N N 57 0G6 HH11 H N N 58 0G6 HH12 H N N 59 0G6 HH21 H N N 60 0G6 HH22 H N N 61 0G6 H11 H N N 62 0G6 H21 H N N 63 0G6 H33 H N N 64 0G6 H34 H N N 65 A OP3 O N N 66 A P P N N 67 A OP1 O N N 68 A OP2 O N N 69 A "O5'" O N N 70 A "C5'" C N N 71 A "C4'" C N R 72 A "O4'" O N N 73 A "C3'" C N S 74 A "O3'" O N N 75 A "C2'" C N R 76 A "O2'" O N N 77 A "C1'" C N R 78 A N9 N Y N 79 A C8 C Y N 80 A N7 N Y N 81 A C5 C Y N 82 A C6 C Y N 83 A N6 N N N 84 A N1 N Y N 85 A C2 C Y N 86 A N3 N Y N 87 A C4 C Y N 88 A HOP3 H N N 89 A HOP2 H N N 90 A "H5'" H N N 91 A "H5''" H N N 92 A "H4'" H N N 93 A "H3'" H N N 94 A "HO3'" H N N 95 A "H2'" H N N 96 A "HO2'" H N N 97 A "H1'" H N N 98 A H8 H N N 99 A H61 H N N 100 A H62 H N N 101 A H2 H N N 102 ACY C C N N 103 ACY O O N N 104 ACY OXT O N N 105 ACY CH3 C N N 106 ACY HXT H N N 107 ACY H1 H N N 108 ACY H2 H N N 109 ACY H3 H N N 110 ALA N N N N 111 ALA CA C N S 112 ALA C C N N 113 ALA O O N N 114 ALA CB C N N 115 ALA OXT O N N 116 ALA H H N N 117 ALA H2 H N N 118 ALA HA H N N 119 ALA HB1 H N N 120 ALA HB2 H N N 121 ALA HB3 H N N 122 ALA HXT H N N 123 ARG N N N N 124 ARG CA C N S 125 ARG C C N N 126 ARG O O N N 127 ARG CB C N N 128 ARG CG C N N 129 ARG CD C N N 130 ARG NE N N N 131 ARG CZ C N N 132 ARG NH1 N N N 133 ARG NH2 N N N 134 ARG OXT O N N 135 ARG H H N N 136 ARG H2 H N N 137 ARG HA H N N 138 ARG HB2 H N N 139 ARG HB3 H N N 140 ARG HG2 H N N 141 ARG HG3 H N N 142 ARG HD2 H N N 143 ARG HD3 H N N 144 ARG HE H N N 145 ARG HH11 H N N 146 ARG HH12 H N N 147 ARG HH21 H N N 148 ARG HH22 H N N 149 ARG HXT H N N 150 ASN N N N N 151 ASN CA C N S 152 ASN C C N N 153 ASN O O N N 154 ASN CB C N N 155 ASN CG C N N 156 ASN OD1 O N N 157 ASN ND2 N N N 158 ASN OXT O N N 159 ASN H H N N 160 ASN H2 H N N 161 ASN HA H N N 162 ASN HB2 H N N 163 ASN HB3 H N N 164 ASN HD21 H N N 165 ASN HD22 H N N 166 ASN HXT H N N 167 ASP N N N N 168 ASP CA C N S 169 ASP C C N N 170 ASP O O N N 171 ASP CB C N N 172 ASP CG C N N 173 ASP OD1 O N N 174 ASP OD2 O N N 175 ASP OXT O N N 176 ASP H H N N 177 ASP H2 H N N 178 ASP HA H N N 179 ASP HB2 H N N 180 ASP HB3 H N N 181 ASP HD2 H N N 182 ASP HXT H N N 183 CFL O3P O N N 184 CFL P P N N 185 CFL O1P O N N 186 CFL O2P O N N 187 CFL "O5'" O N N 188 CFL "C5'" C N N 189 CFL "C4'" C N R 190 CFL "O4'" O N N 191 CFL "C3'" C N R 192 CFL "O3'" O N N 193 CFL "C2'" C N S 194 CFL "C1'" C N R 195 CFL N1 N N N 196 CFL C2 C N N 197 CFL O2 O N N 198 CFL N3 N N N 199 CFL C4 C N N 200 CFL N4 N N N 201 CFL C5 C N N 202 CFL C6 C N N 203 CFL F F N N 204 CFL HO3P H N N 205 CFL HO1P H N N 206 CFL "H5'1" H N N 207 CFL "H5'2" H N N 208 CFL "H4'" H N N 209 CFL "H3'" H N N 210 CFL "HO3'" H N N 211 CFL "H2'" H N N 212 CFL "H1'" H N N 213 CFL HN41 H N N 214 CFL HN42 H N N 215 CFL H5 H N N 216 CFL H6 H N N 217 CYS N N N N 218 CYS CA C N R 219 CYS C C N N 220 CYS O O N N 221 CYS CB C N N 222 CYS SG S N N 223 CYS OXT O N N 224 CYS H H N N 225 CYS H2 H N N 226 CYS HA H N N 227 CYS HB2 H N N 228 CYS HB3 H N N 229 CYS HG H N N 230 CYS HXT H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 G OP3 O N N 268 G P P N N 269 G OP1 O N N 270 G OP2 O N N 271 G "O5'" O N N 272 G "C5'" C N N 273 G "C4'" C N R 274 G "O4'" O N N 275 G "C3'" C N S 276 G "O3'" O N N 277 G "C2'" C N R 278 G "O2'" O N N 279 G "C1'" C N R 280 G N9 N Y N 281 G C8 C Y N 282 G N7 N Y N 283 G C5 C Y N 284 G C6 C N N 285 G O6 O N N 286 G N1 N N N 287 G C2 C N N 288 G N2 N N N 289 G N3 N N N 290 G C4 C Y N 291 G HOP3 H N N 292 G HOP2 H N N 293 G "H5'" H N N 294 G "H5''" H N N 295 G "H4'" H N N 296 G "H3'" H N N 297 G "HO3'" H N N 298 G "H2'" H N N 299 G "HO2'" H N N 300 G "H1'" H N N 301 G H8 H N N 302 G H1 H N N 303 G H21 H N N 304 G H22 H N N 305 GLN N N N N 306 GLN CA C N S 307 GLN C C N N 308 GLN O O N N 309 GLN CB C N N 310 GLN CG C N N 311 GLN CD C N N 312 GLN OE1 O N N 313 GLN NE2 N N N 314 GLN OXT O N N 315 GLN H H N N 316 GLN H2 H N N 317 GLN HA H N N 318 GLN HB2 H N N 319 GLN HB3 H N N 320 GLN HG2 H N N 321 GLN HG3 H N N 322 GLN HE21 H N N 323 GLN HE22 H N N 324 GLN HXT H N N 325 GLU N N N N 326 GLU CA C N S 327 GLU C C N N 328 GLU O O N N 329 GLU CB C N N 330 GLU CG C N N 331 GLU CD C N N 332 GLU OE1 O N N 333 GLU OE2 O N N 334 GLU OXT O N N 335 GLU H H N N 336 GLU H2 H N N 337 GLU HA H N N 338 GLU HB2 H N N 339 GLU HB3 H N N 340 GLU HG2 H N N 341 GLU HG3 H N N 342 GLU HE2 H N N 343 GLU HXT H N N 344 GLY N N N N 345 GLY CA C N N 346 GLY C C N N 347 GLY O O N N 348 GLY OXT O N N 349 GLY H H N N 350 GLY H2 H N N 351 GLY HA2 H N N 352 GLY HA3 H N N 353 GLY HXT H N N 354 HIS N N N N 355 HIS CA C N S 356 HIS C C N N 357 HIS O O N N 358 HIS CB C N N 359 HIS CG C Y N 360 HIS ND1 N Y N 361 HIS CD2 C Y N 362 HIS CE1 C Y N 363 HIS NE2 N Y N 364 HIS OXT O N N 365 HIS H H N N 366 HIS H2 H N N 367 HIS HA H N N 368 HIS HB2 H N N 369 HIS HB3 H N N 370 HIS HD1 H N N 371 HIS HD2 H N N 372 HIS HE1 H N N 373 HIS HE2 H N N 374 HIS HXT H N N 375 HOH O O N N 376 HOH H1 H N N 377 HOH H2 H N N 378 ILE N N N N 379 ILE CA C N S 380 ILE C C N N 381 ILE O O N N 382 ILE CB C N S 383 ILE CG1 C N N 384 ILE CG2 C N N 385 ILE CD1 C N N 386 ILE OXT O N N 387 ILE H H N N 388 ILE H2 H N N 389 ILE HA H N N 390 ILE HB H N N 391 ILE HG12 H N N 392 ILE HG13 H N N 393 ILE HG21 H N N 394 ILE HG22 H N N 395 ILE HG23 H N N 396 ILE HD11 H N N 397 ILE HD12 H N N 398 ILE HD13 H N N 399 ILE HXT H N N 400 LEU N N N N 401 LEU CA C N S 402 LEU C C N N 403 LEU O O N N 404 LEU CB C N N 405 LEU CG C N N 406 LEU CD1 C N N 407 LEU CD2 C N N 408 LEU OXT O N N 409 LEU H H N N 410 LEU H2 H N N 411 LEU HA H N N 412 LEU HB2 H N N 413 LEU HB3 H N N 414 LEU HG H N N 415 LEU HD11 H N N 416 LEU HD12 H N N 417 LEU HD13 H N N 418 LEU HD21 H N N 419 LEU HD22 H N N 420 LEU HD23 H N N 421 LEU HXT H N N 422 LYS N N N N 423 LYS CA C N S 424 LYS C C N N 425 LYS O O N N 426 LYS CB C N N 427 LYS CG C N N 428 LYS CD C N N 429 LYS CE C N N 430 LYS NZ N N N 431 LYS OXT O N N 432 LYS H H N N 433 LYS H2 H N N 434 LYS HA H N N 435 LYS HB2 H N N 436 LYS HB3 H N N 437 LYS HG2 H N N 438 LYS HG3 H N N 439 LYS HD2 H N N 440 LYS HD3 H N N 441 LYS HE2 H N N 442 LYS HE3 H N N 443 LYS HZ1 H N N 444 LYS HZ2 H N N 445 LYS HZ3 H N N 446 LYS HXT H N N 447 MET N N N N 448 MET CA C N S 449 MET C C N N 450 MET O O N N 451 MET CB C N N 452 MET CG C N N 453 MET SD S N N 454 MET CE C N N 455 MET OXT O N N 456 MET H H N N 457 MET H2 H N N 458 MET HA H N N 459 MET HB2 H N N 460 MET HB3 H N N 461 MET HG2 H N N 462 MET HG3 H N N 463 MET HE1 H N N 464 MET HE2 H N N 465 MET HE3 H N N 466 MET HXT H N N 467 MG MG MG N N 468 P6G O1 O N N 469 P6G C2 C N N 470 P6G C3 C N N 471 P6G O4 O N N 472 P6G C5 C N N 473 P6G C6 C N N 474 P6G O7 O N N 475 P6G C8 C N N 476 P6G C9 C N N 477 P6G O10 O N N 478 P6G C11 C N N 479 P6G C12 C N N 480 P6G O13 O N N 481 P6G C14 C N N 482 P6G C15 C N N 483 P6G O16 O N N 484 P6G C17 C N N 485 P6G C18 C N N 486 P6G O19 O N N 487 P6G H1 H N N 488 P6G H21 H N N 489 P6G H22 H N N 490 P6G H31 H N N 491 P6G H32 H N N 492 P6G H51 H N N 493 P6G H52 H N N 494 P6G H61 H N N 495 P6G H62 H N N 496 P6G H81 H N N 497 P6G H82 H N N 498 P6G H91 H N N 499 P6G H92 H N N 500 P6G H111 H N N 501 P6G H112 H N N 502 P6G H121 H N N 503 P6G H122 H N N 504 P6G H141 H N N 505 P6G H142 H N N 506 P6G H151 H N N 507 P6G H152 H N N 508 P6G H171 H N N 509 P6G H172 H N N 510 P6G H181 H N N 511 P6G H182 H N N 512 P6G H19 H N N 513 PEG C1 C N N 514 PEG O1 O N N 515 PEG C2 C N N 516 PEG O2 O N N 517 PEG C3 C N N 518 PEG C4 C N N 519 PEG O4 O N N 520 PEG H11 H N N 521 PEG H12 H N N 522 PEG HO1 H N N 523 PEG H21 H N N 524 PEG H22 H N N 525 PEG H31 H N N 526 PEG H32 H N N 527 PEG H41 H N N 528 PEG H42 H N N 529 PEG HO4 H N N 530 PHE N N N N 531 PHE CA C N S 532 PHE C C N N 533 PHE O O N N 534 PHE CB C N N 535 PHE CG C Y N 536 PHE CD1 C Y N 537 PHE CD2 C Y N 538 PHE CE1 C Y N 539 PHE CE2 C Y N 540 PHE CZ C Y N 541 PHE OXT O N N 542 PHE H H N N 543 PHE H2 H N N 544 PHE HA H N N 545 PHE HB2 H N N 546 PHE HB3 H N N 547 PHE HD1 H N N 548 PHE HD2 H N N 549 PHE HE1 H N N 550 PHE HE2 H N N 551 PHE HZ H N N 552 PHE HXT H N N 553 PRO N N N N 554 PRO CA C N S 555 PRO C C N N 556 PRO O O N N 557 PRO CB C N N 558 PRO CG C N N 559 PRO CD C N N 560 PRO OXT O N N 561 PRO H H N N 562 PRO HA H N N 563 PRO HB2 H N N 564 PRO HB3 H N N 565 PRO HG2 H N N 566 PRO HG3 H N N 567 PRO HD2 H N N 568 PRO HD3 H N N 569 PRO HXT H N N 570 SER N N N N 571 SER CA C N S 572 SER C C N N 573 SER O O N N 574 SER CB C N N 575 SER OG O N N 576 SER OXT O N N 577 SER H H N N 578 SER H2 H N N 579 SER HA H N N 580 SER HB2 H N N 581 SER HB3 H N N 582 SER HG H N N 583 SER HXT H N N 584 THR N N N N 585 THR CA C N S 586 THR C C N N 587 THR O O N N 588 THR CB C N R 589 THR OG1 O N N 590 THR CG2 C N N 591 THR OXT O N N 592 THR H H N N 593 THR H2 H N N 594 THR HA H N N 595 THR HB H N N 596 THR HG1 H N N 597 THR HG21 H N N 598 THR HG22 H N N 599 THR HG23 H N N 600 THR HXT H N N 601 TRP N N N N 602 TRP CA C N S 603 TRP C C N N 604 TRP O O N N 605 TRP CB C N N 606 TRP CG C Y N 607 TRP CD1 C Y N 608 TRP CD2 C Y N 609 TRP NE1 N Y N 610 TRP CE2 C Y N 611 TRP CE3 C Y N 612 TRP CZ2 C Y N 613 TRP CZ3 C Y N 614 TRP CH2 C Y N 615 TRP OXT O N N 616 TRP H H N N 617 TRP H2 H N N 618 TRP HA H N N 619 TRP HB2 H N N 620 TRP HB3 H N N 621 TRP HD1 H N N 622 TRP HE1 H N N 623 TRP HE3 H N N 624 TRP HZ2 H N N 625 TRP HZ3 H N N 626 TRP HH2 H N N 627 TRP HXT H N N 628 TYR N N N N 629 TYR CA C N S 630 TYR C C N N 631 TYR O O N N 632 TYR CB C N N 633 TYR CG C Y N 634 TYR CD1 C Y N 635 TYR CD2 C Y N 636 TYR CE1 C Y N 637 TYR CE2 C Y N 638 TYR CZ C Y N 639 TYR OH O N N 640 TYR OXT O N N 641 TYR H H N N 642 TYR H2 H N N 643 TYR HA H N N 644 TYR HB2 H N N 645 TYR HB3 H N N 646 TYR HD1 H N N 647 TYR HD2 H N N 648 TYR HE1 H N N 649 TYR HE2 H N N 650 TYR HH H N N 651 TYR HXT H N N 652 UFT OP3 O N N 653 UFT P P N N 654 UFT OP1 O N N 655 UFT OP2 O N N 656 UFT "O5'" O N N 657 UFT N1 N N N 658 UFT C6 C N N 659 UFT C2 C N N 660 UFT O2 O N N 661 UFT N3 N N N 662 UFT C4 C N N 663 UFT O4 O N N 664 UFT C5 C N N 665 UFT "F2'" F N N 666 UFT "C2'" C N R 667 UFT "C5'" C N N 668 UFT "C4'" C N R 669 UFT "O4'" O N N 670 UFT "C1'" C N R 671 UFT "C3'" C N R 672 UFT "O3'" O N N 673 UFT HOP3 H N N 674 UFT HOP2 H N N 675 UFT H6 H N N 676 UFT H5 H N N 677 UFT "H2'" H N N 678 UFT "H5'" H N N 679 UFT "H5'A" H N N 680 UFT "H4'" H N N 681 UFT "H1'" H N N 682 UFT "H3'" H N N 683 UFT "HO3'" H N N 684 UFT HN3 H N N 685 VAL N N N N 686 VAL CA C N S 687 VAL C C N N 688 VAL O O N N 689 VAL CB C N N 690 VAL CG1 C N N 691 VAL CG2 C N N 692 VAL OXT O N N 693 VAL H H N N 694 VAL H2 H N N 695 VAL HA H N N 696 VAL HB H N N 697 VAL HG11 H N N 698 VAL HG12 H N N 699 VAL HG13 H N N 700 VAL HG21 H N N 701 VAL HG22 H N N 702 VAL HG23 H N N 703 VAL HXT H N N 704 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0G6 N CA sing N N 1 0G6 N H sing N N 2 0G6 N H2 sing N N 3 0G6 CA C sing N N 4 0G6 CA CB sing N N 5 0G6 CA HA sing N N 6 0G6 C O doub N N 7 0G6 C N1 sing N N 8 0G6 CB CG sing N N 9 0G6 CB HB2 sing N N 10 0G6 CB HB3 sing N N 11 0G6 CG CD1 doub Y N 12 0G6 CG CD2 sing Y N 13 0G6 CD1 CE1 sing Y N 14 0G6 CD1 HD1 sing N N 15 0G6 CD2 CE2 doub Y N 16 0G6 CD2 HD2 sing N N 17 0G6 CE1 CZ doub Y N 18 0G6 CE1 HE1 sing N N 19 0G6 CE2 CZ sing Y N 20 0G6 CE2 HE2 sing N N 21 0G6 CZ HZ sing N N 22 0G6 N1 CA1 sing N N 23 0G6 N1 CD sing N N 24 0G6 CA1 C1 sing N N 25 0G6 CA1 CB1 sing N N 26 0G6 CA1 HA1 sing N N 27 0G6 C1 O1 doub N N 28 0G6 C1 N2 sing N N 29 0G6 CB1 CG1 sing N N 30 0G6 CB1 HB21 sing N N 31 0G6 CB1 HB31 sing N N 32 0G6 CG1 CD sing N N 33 0G6 CG1 HG2 sing N N 34 0G6 CG1 HG3 sing N N 35 0G6 CD HD21 sing N N 36 0G6 CD HD3 sing N N 37 0G6 N2 CA2 sing N N 38 0G6 N2 H1 sing N N 39 0G6 CA2 C2 sing N N 40 0G6 CA2 CB2 sing N N 41 0G6 CA2 HA2 sing N N 42 0G6 C2 O2 sing N N 43 0G6 C2 C3 sing N N 44 0G6 CB2 CG2 sing N N 45 0G6 CB2 HB22 sing N N 46 0G6 CB2 HB32 sing N N 47 0G6 CG2 CD3 sing N N 48 0G6 CG2 HG21 sing N N 49 0G6 CG2 HG31 sing N N 50 0G6 CD3 NE sing N N 51 0G6 CD3 HD22 sing N N 52 0G6 CD3 HD31 sing N N 53 0G6 NE CZ1 sing N N 54 0G6 NE HE sing N N 55 0G6 CZ1 NH1 sing N N 56 0G6 CZ1 NH2 doub N N 57 0G6 NH1 HH11 sing N N 58 0G6 NH1 HH12 sing N N 59 0G6 NH2 HH21 sing N N 60 0G6 NH2 HH22 sing N N 61 0G6 C3 H11 sing N N 62 0G6 C3 H21 sing N N 63 0G6 CL C3 sing N N 64 0G6 C2 H33 sing N N 65 0G6 O2 H34 sing N N 66 A OP3 P sing N N 67 A OP3 HOP3 sing N N 68 A P OP1 doub N N 69 A P OP2 sing N N 70 A P "O5'" sing N N 71 A OP2 HOP2 sing N N 72 A "O5'" "C5'" sing N N 73 A "C5'" "C4'" sing N N 74 A "C5'" "H5'" sing N N 75 A "C5'" "H5''" sing N N 76 A "C4'" "O4'" sing N N 77 A "C4'" "C3'" sing N N 78 A "C4'" "H4'" sing N N 79 A "O4'" "C1'" sing N N 80 A "C3'" "O3'" sing N N 81 A "C3'" "C2'" sing N N 82 A "C3'" "H3'" sing N N 83 A "O3'" "HO3'" sing N N 84 A "C2'" "O2'" sing N N 85 A "C2'" "C1'" sing N N 86 A "C2'" "H2'" sing N N 87 A "O2'" "HO2'" sing N N 88 A "C1'" N9 sing N N 89 A "C1'" "H1'" sing N N 90 A N9 C8 sing Y N 91 A N9 C4 sing Y N 92 A C8 N7 doub Y N 93 A C8 H8 sing N N 94 A N7 C5 sing Y N 95 A C5 C6 sing Y N 96 A C5 C4 doub Y N 97 A C6 N6 sing N N 98 A C6 N1 doub Y N 99 A N6 H61 sing N N 100 A N6 H62 sing N N 101 A N1 C2 sing Y N 102 A C2 N3 doub Y N 103 A C2 H2 sing N N 104 A N3 C4 sing Y N 105 ACY C O doub N N 106 ACY C OXT sing N N 107 ACY C CH3 sing N N 108 ACY OXT HXT sing N N 109 ACY CH3 H1 sing N N 110 ACY CH3 H2 sing N N 111 ACY CH3 H3 sing N N 112 ALA N CA sing N N 113 ALA N H sing N N 114 ALA N H2 sing N N 115 ALA CA C sing N N 116 ALA CA CB sing N N 117 ALA CA HA sing N N 118 ALA C O doub N N 119 ALA C OXT sing N N 120 ALA CB HB1 sing N N 121 ALA CB HB2 sing N N 122 ALA CB HB3 sing N N 123 ALA OXT HXT sing N N 124 ARG N CA sing N N 125 ARG N H sing N N 126 ARG N H2 sing N N 127 ARG CA C sing N N 128 ARG CA CB sing N N 129 ARG CA HA sing N N 130 ARG C O doub N N 131 ARG C OXT sing N N 132 ARG CB CG sing N N 133 ARG CB HB2 sing N N 134 ARG CB HB3 sing N N 135 ARG CG CD sing N N 136 ARG CG HG2 sing N N 137 ARG CG HG3 sing N N 138 ARG CD NE sing N N 139 ARG CD HD2 sing N N 140 ARG CD HD3 sing N N 141 ARG NE CZ sing N N 142 ARG NE HE sing N N 143 ARG CZ NH1 sing N N 144 ARG CZ NH2 doub N N 145 ARG NH1 HH11 sing N N 146 ARG NH1 HH12 sing N N 147 ARG NH2 HH21 sing N N 148 ARG NH2 HH22 sing N N 149 ARG OXT HXT sing N N 150 ASN N CA sing N N 151 ASN N H sing N N 152 ASN N H2 sing N N 153 ASN CA C sing N N 154 ASN CA CB sing N N 155 ASN CA HA sing N N 156 ASN C O doub N N 157 ASN C OXT sing N N 158 ASN CB CG sing N N 159 ASN CB HB2 sing N N 160 ASN CB HB3 sing N N 161 ASN CG OD1 doub N N 162 ASN CG ND2 sing N N 163 ASN ND2 HD21 sing N N 164 ASN ND2 HD22 sing N N 165 ASN OXT HXT sing N N 166 ASP N CA sing N N 167 ASP N H sing N N 168 ASP N H2 sing N N 169 ASP CA C sing N N 170 ASP CA CB sing N N 171 ASP CA HA sing N N 172 ASP C O doub N N 173 ASP C OXT sing N N 174 ASP CB CG sing N N 175 ASP CB HB2 sing N N 176 ASP CB HB3 sing N N 177 ASP CG OD1 doub N N 178 ASP CG OD2 sing N N 179 ASP OD2 HD2 sing N N 180 ASP OXT HXT sing N N 181 CFL O3P P sing N N 182 CFL O3P HO3P sing N N 183 CFL P O1P sing N N 184 CFL P O2P doub N N 185 CFL P "O5'" sing N N 186 CFL O1P HO1P sing N N 187 CFL "O5'" "C5'" sing N N 188 CFL "C5'" "C4'" sing N N 189 CFL "C5'" "H5'1" sing N N 190 CFL "C5'" "H5'2" sing N N 191 CFL "C4'" "O4'" sing N N 192 CFL "C4'" "C3'" sing N N 193 CFL "C4'" "H4'" sing N N 194 CFL "O4'" "C1'" sing N N 195 CFL "C3'" "O3'" sing N N 196 CFL "C3'" "C2'" sing N N 197 CFL "C3'" "H3'" sing N N 198 CFL "O3'" "HO3'" sing N N 199 CFL "C2'" "C1'" sing N N 200 CFL "C2'" F sing N N 201 CFL "C2'" "H2'" sing N N 202 CFL "C1'" N1 sing N N 203 CFL "C1'" "H1'" sing N N 204 CFL N1 C2 sing N N 205 CFL N1 C6 sing N N 206 CFL C2 O2 doub N N 207 CFL C2 N3 sing N N 208 CFL N3 C4 doub N N 209 CFL C4 N4 sing N N 210 CFL C4 C5 sing N N 211 CFL N4 HN41 sing N N 212 CFL N4 HN42 sing N N 213 CFL C5 C6 doub N N 214 CFL C5 H5 sing N N 215 CFL C6 H6 sing N N 216 CYS N CA sing N N 217 CYS N H sing N N 218 CYS N H2 sing N N 219 CYS CA C sing N N 220 CYS CA CB sing N N 221 CYS CA HA sing N N 222 CYS C O doub N N 223 CYS C OXT sing N N 224 CYS CB SG sing N N 225 CYS CB HB2 sing N N 226 CYS CB HB3 sing N N 227 CYS SG HG sing N N 228 CYS OXT HXT sing N N 229 DT OP3 P sing N N 230 DT OP3 HOP3 sing N N 231 DT P OP1 doub N N 232 DT P OP2 sing N N 233 DT P "O5'" sing N N 234 DT OP2 HOP2 sing N N 235 DT "O5'" "C5'" sing N N 236 DT "C5'" "C4'" sing N N 237 DT "C5'" "H5'" sing N N 238 DT "C5'" "H5''" sing N N 239 DT "C4'" "O4'" sing N N 240 DT "C4'" "C3'" sing N N 241 DT "C4'" "H4'" sing N N 242 DT "O4'" "C1'" sing N N 243 DT "C3'" "O3'" sing N N 244 DT "C3'" "C2'" sing N N 245 DT "C3'" "H3'" sing N N 246 DT "O3'" "HO3'" sing N N 247 DT "C2'" "C1'" sing N N 248 DT "C2'" "H2'" sing N N 249 DT "C2'" "H2''" sing N N 250 DT "C1'" N1 sing N N 251 DT "C1'" "H1'" sing N N 252 DT N1 C2 sing N N 253 DT N1 C6 sing N N 254 DT C2 O2 doub N N 255 DT C2 N3 sing N N 256 DT N3 C4 sing N N 257 DT N3 H3 sing N N 258 DT C4 O4 doub N N 259 DT C4 C5 sing N N 260 DT C5 C7 sing N N 261 DT C5 C6 doub N N 262 DT C7 H71 sing N N 263 DT C7 H72 sing N N 264 DT C7 H73 sing N N 265 DT C6 H6 sing N N 266 G OP3 P sing N N 267 G OP3 HOP3 sing N N 268 G P OP1 doub N N 269 G P OP2 sing N N 270 G P "O5'" sing N N 271 G OP2 HOP2 sing N N 272 G "O5'" "C5'" sing N N 273 G "C5'" "C4'" sing N N 274 G "C5'" "H5'" sing N N 275 G "C5'" "H5''" sing N N 276 G "C4'" "O4'" sing N N 277 G "C4'" "C3'" sing N N 278 G "C4'" "H4'" sing N N 279 G "O4'" "C1'" sing N N 280 G "C3'" "O3'" sing N N 281 G "C3'" "C2'" sing N N 282 G "C3'" "H3'" sing N N 283 G "O3'" "HO3'" sing N N 284 G "C2'" "O2'" sing N N 285 G "C2'" "C1'" sing N N 286 G "C2'" "H2'" sing N N 287 G "O2'" "HO2'" sing N N 288 G "C1'" N9 sing N N 289 G "C1'" "H1'" sing N N 290 G N9 C8 sing Y N 291 G N9 C4 sing Y N 292 G C8 N7 doub Y N 293 G C8 H8 sing N N 294 G N7 C5 sing Y N 295 G C5 C6 sing N N 296 G C5 C4 doub Y N 297 G C6 O6 doub N N 298 G C6 N1 sing N N 299 G N1 C2 sing N N 300 G N1 H1 sing N N 301 G C2 N2 sing N N 302 G C2 N3 doub N N 303 G N2 H21 sing N N 304 G N2 H22 sing N N 305 G N3 C4 sing N N 306 GLN N CA sing N N 307 GLN N H sing N N 308 GLN N H2 sing N N 309 GLN CA C sing N N 310 GLN CA CB sing N N 311 GLN CA HA sing N N 312 GLN C O doub N N 313 GLN C OXT sing N N 314 GLN CB CG sing N N 315 GLN CB HB2 sing N N 316 GLN CB HB3 sing N N 317 GLN CG CD sing N N 318 GLN CG HG2 sing N N 319 GLN CG HG3 sing N N 320 GLN CD OE1 doub N N 321 GLN CD NE2 sing N N 322 GLN NE2 HE21 sing N N 323 GLN NE2 HE22 sing N N 324 GLN OXT HXT sing N N 325 GLU N CA sing N N 326 GLU N H sing N N 327 GLU N H2 sing N N 328 GLU CA C sing N N 329 GLU CA CB sing N N 330 GLU CA HA sing N N 331 GLU C O doub N N 332 GLU C OXT sing N N 333 GLU CB CG sing N N 334 GLU CB HB2 sing N N 335 GLU CB HB3 sing N N 336 GLU CG CD sing N N 337 GLU CG HG2 sing N N 338 GLU CG HG3 sing N N 339 GLU CD OE1 doub N N 340 GLU CD OE2 sing N N 341 GLU OE2 HE2 sing N N 342 GLU OXT HXT sing N N 343 GLY N CA sing N N 344 GLY N H sing N N 345 GLY N H2 sing N N 346 GLY CA C sing N N 347 GLY CA HA2 sing N N 348 GLY CA HA3 sing N N 349 GLY C O doub N N 350 GLY C OXT sing N N 351 GLY OXT HXT sing N N 352 HIS N CA sing N N 353 HIS N H sing N N 354 HIS N H2 sing N N 355 HIS CA C sing N N 356 HIS CA CB sing N N 357 HIS CA HA sing N N 358 HIS C O doub N N 359 HIS C OXT sing N N 360 HIS CB CG sing N N 361 HIS CB HB2 sing N N 362 HIS CB HB3 sing N N 363 HIS CG ND1 sing Y N 364 HIS CG CD2 doub Y N 365 HIS ND1 CE1 doub Y N 366 HIS ND1 HD1 sing N N 367 HIS CD2 NE2 sing Y N 368 HIS CD2 HD2 sing N N 369 HIS CE1 NE2 sing Y N 370 HIS CE1 HE1 sing N N 371 HIS NE2 HE2 sing N N 372 HIS OXT HXT sing N N 373 HOH O H1 sing N N 374 HOH O H2 sing N N 375 ILE N CA sing N N 376 ILE N H sing N N 377 ILE N H2 sing N N 378 ILE CA C sing N N 379 ILE CA CB sing N N 380 ILE CA HA sing N N 381 ILE C O doub N N 382 ILE C OXT sing N N 383 ILE CB CG1 sing N N 384 ILE CB CG2 sing N N 385 ILE CB HB sing N N 386 ILE CG1 CD1 sing N N 387 ILE CG1 HG12 sing N N 388 ILE CG1 HG13 sing N N 389 ILE CG2 HG21 sing N N 390 ILE CG2 HG22 sing N N 391 ILE CG2 HG23 sing N N 392 ILE CD1 HD11 sing N N 393 ILE CD1 HD12 sing N N 394 ILE CD1 HD13 sing N N 395 ILE OXT HXT sing N N 396 LEU N CA sing N N 397 LEU N H sing N N 398 LEU N H2 sing N N 399 LEU CA C sing N N 400 LEU CA CB sing N N 401 LEU CA HA sing N N 402 LEU C O doub N N 403 LEU C OXT sing N N 404 LEU CB CG sing N N 405 LEU CB HB2 sing N N 406 LEU CB HB3 sing N N 407 LEU CG CD1 sing N N 408 LEU CG CD2 sing N N 409 LEU CG HG sing N N 410 LEU CD1 HD11 sing N N 411 LEU CD1 HD12 sing N N 412 LEU CD1 HD13 sing N N 413 LEU CD2 HD21 sing N N 414 LEU CD2 HD22 sing N N 415 LEU CD2 HD23 sing N N 416 LEU OXT HXT sing N N 417 LYS N CA sing N N 418 LYS N H sing N N 419 LYS N H2 sing N N 420 LYS CA C sing N N 421 LYS CA CB sing N N 422 LYS CA HA sing N N 423 LYS C O doub N N 424 LYS C OXT sing N N 425 LYS CB CG sing N N 426 LYS CB HB2 sing N N 427 LYS CB HB3 sing N N 428 LYS CG CD sing N N 429 LYS CG HG2 sing N N 430 LYS CG HG3 sing N N 431 LYS CD CE sing N N 432 LYS CD HD2 sing N N 433 LYS CD HD3 sing N N 434 LYS CE NZ sing N N 435 LYS CE HE2 sing N N 436 LYS CE HE3 sing N N 437 LYS NZ HZ1 sing N N 438 LYS NZ HZ2 sing N N 439 LYS NZ HZ3 sing N N 440 LYS OXT HXT sing N N 441 MET N CA sing N N 442 MET N H sing N N 443 MET N H2 sing N N 444 MET CA C sing N N 445 MET CA CB sing N N 446 MET CA HA sing N N 447 MET C O doub N N 448 MET C OXT sing N N 449 MET CB CG sing N N 450 MET CB HB2 sing N N 451 MET CB HB3 sing N N 452 MET CG SD sing N N 453 MET CG HG2 sing N N 454 MET CG HG3 sing N N 455 MET SD CE sing N N 456 MET CE HE1 sing N N 457 MET CE HE2 sing N N 458 MET CE HE3 sing N N 459 MET OXT HXT sing N N 460 P6G O1 C2 sing N N 461 P6G O1 H1 sing N N 462 P6G C2 C3 sing N N 463 P6G C2 H21 sing N N 464 P6G C2 H22 sing N N 465 P6G C3 O4 sing N N 466 P6G C3 H31 sing N N 467 P6G C3 H32 sing N N 468 P6G O4 C5 sing N N 469 P6G C5 C6 sing N N 470 P6G C5 H51 sing N N 471 P6G C5 H52 sing N N 472 P6G C6 O7 sing N N 473 P6G C6 H61 sing N N 474 P6G C6 H62 sing N N 475 P6G O7 C8 sing N N 476 P6G C8 C9 sing N N 477 P6G C8 H81 sing N N 478 P6G C8 H82 sing N N 479 P6G C9 O10 sing N N 480 P6G C9 H91 sing N N 481 P6G C9 H92 sing N N 482 P6G O10 C11 sing N N 483 P6G C11 C12 sing N N 484 P6G C11 H111 sing N N 485 P6G C11 H112 sing N N 486 P6G C12 O13 sing N N 487 P6G C12 H121 sing N N 488 P6G C12 H122 sing N N 489 P6G O13 C14 sing N N 490 P6G C14 C15 sing N N 491 P6G C14 H141 sing N N 492 P6G C14 H142 sing N N 493 P6G C15 O16 sing N N 494 P6G C15 H151 sing N N 495 P6G C15 H152 sing N N 496 P6G O16 C17 sing N N 497 P6G C17 C18 sing N N 498 P6G C17 H171 sing N N 499 P6G C17 H172 sing N N 500 P6G C18 O19 sing N N 501 P6G C18 H181 sing N N 502 P6G C18 H182 sing N N 503 P6G O19 H19 sing N N 504 PEG C1 O1 sing N N 505 PEG C1 C2 sing N N 506 PEG C1 H11 sing N N 507 PEG C1 H12 sing N N 508 PEG O1 HO1 sing N N 509 PEG C2 O2 sing N N 510 PEG C2 H21 sing N N 511 PEG C2 H22 sing N N 512 PEG O2 C3 sing N N 513 PEG C3 C4 sing N N 514 PEG C3 H31 sing N N 515 PEG C3 H32 sing N N 516 PEG C4 O4 sing N N 517 PEG C4 H41 sing N N 518 PEG C4 H42 sing N N 519 PEG O4 HO4 sing N N 520 PHE N CA sing N N 521 PHE N H sing N N 522 PHE N H2 sing N N 523 PHE CA C sing N N 524 PHE CA CB sing N N 525 PHE CA HA sing N N 526 PHE C O doub N N 527 PHE C OXT sing N N 528 PHE CB CG sing N N 529 PHE CB HB2 sing N N 530 PHE CB HB3 sing N N 531 PHE CG CD1 doub Y N 532 PHE CG CD2 sing Y N 533 PHE CD1 CE1 sing Y N 534 PHE CD1 HD1 sing N N 535 PHE CD2 CE2 doub Y N 536 PHE CD2 HD2 sing N N 537 PHE CE1 CZ doub Y N 538 PHE CE1 HE1 sing N N 539 PHE CE2 CZ sing Y N 540 PHE CE2 HE2 sing N N 541 PHE CZ HZ sing N N 542 PHE OXT HXT sing N N 543 PRO N CA sing N N 544 PRO N CD sing N N 545 PRO N H sing N N 546 PRO CA C sing N N 547 PRO CA CB sing N N 548 PRO CA HA sing N N 549 PRO C O doub N N 550 PRO C OXT sing N N 551 PRO CB CG sing N N 552 PRO CB HB2 sing N N 553 PRO CB HB3 sing N N 554 PRO CG CD sing N N 555 PRO CG HG2 sing N N 556 PRO CG HG3 sing N N 557 PRO CD HD2 sing N N 558 PRO CD HD3 sing N N 559 PRO OXT HXT sing N N 560 SER N CA sing N N 561 SER N H sing N N 562 SER N H2 sing N N 563 SER CA C sing N N 564 SER CA CB sing N N 565 SER CA HA sing N N 566 SER C O doub N N 567 SER C OXT sing N N 568 SER CB OG sing N N 569 SER CB HB2 sing N N 570 SER CB HB3 sing N N 571 SER OG HG sing N N 572 SER OXT HXT sing N N 573 THR N CA sing N N 574 THR N H sing N N 575 THR N H2 sing N N 576 THR CA C sing N N 577 THR CA CB sing N N 578 THR CA HA sing N N 579 THR C O doub N N 580 THR C OXT sing N N 581 THR CB OG1 sing N N 582 THR CB CG2 sing N N 583 THR CB HB sing N N 584 THR OG1 HG1 sing N N 585 THR CG2 HG21 sing N N 586 THR CG2 HG22 sing N N 587 THR CG2 HG23 sing N N 588 THR OXT HXT sing N N 589 TRP N CA sing N N 590 TRP N H sing N N 591 TRP N H2 sing N N 592 TRP CA C sing N N 593 TRP CA CB sing N N 594 TRP CA HA sing N N 595 TRP C O doub N N 596 TRP C OXT sing N N 597 TRP CB CG sing N N 598 TRP CB HB2 sing N N 599 TRP CB HB3 sing N N 600 TRP CG CD1 doub Y N 601 TRP CG CD2 sing Y N 602 TRP CD1 NE1 sing Y N 603 TRP CD1 HD1 sing N N 604 TRP CD2 CE2 doub Y N 605 TRP CD2 CE3 sing Y N 606 TRP NE1 CE2 sing Y N 607 TRP NE1 HE1 sing N N 608 TRP CE2 CZ2 sing Y N 609 TRP CE3 CZ3 doub Y N 610 TRP CE3 HE3 sing N N 611 TRP CZ2 CH2 doub Y N 612 TRP CZ2 HZ2 sing N N 613 TRP CZ3 CH2 sing Y N 614 TRP CZ3 HZ3 sing N N 615 TRP CH2 HH2 sing N N 616 TRP OXT HXT sing N N 617 TYR N CA sing N N 618 TYR N H sing N N 619 TYR N H2 sing N N 620 TYR CA C sing N N 621 TYR CA CB sing N N 622 TYR CA HA sing N N 623 TYR C O doub N N 624 TYR C OXT sing N N 625 TYR CB CG sing N N 626 TYR CB HB2 sing N N 627 TYR CB HB3 sing N N 628 TYR CG CD1 doub Y N 629 TYR CG CD2 sing Y N 630 TYR CD1 CE1 sing Y N 631 TYR CD1 HD1 sing N N 632 TYR CD2 CE2 doub Y N 633 TYR CD2 HD2 sing N N 634 TYR CE1 CZ doub Y N 635 TYR CE1 HE1 sing N N 636 TYR CE2 CZ sing Y N 637 TYR CE2 HE2 sing N N 638 TYR CZ OH sing N N 639 TYR OH HH sing N N 640 TYR OXT HXT sing N N 641 UFT OP3 P sing N N 642 UFT OP1 P doub N N 643 UFT P OP2 sing N N 644 UFT P "O5'" sing N N 645 UFT OP3 HOP3 sing N N 646 UFT OP2 HOP2 sing N N 647 UFT "O5'" "C5'" sing N N 648 UFT C6 N1 sing N N 649 UFT N1 C2 sing N N 650 UFT N1 "C1'" sing N N 651 UFT C5 C6 doub N N 652 UFT C6 H6 sing N N 653 UFT N3 C2 sing N N 654 UFT C2 O2 doub N N 655 UFT C4 N3 sing N N 656 UFT O4 C4 doub N N 657 UFT C5 C4 sing N N 658 UFT C5 H5 sing N N 659 UFT "C2'" "F2'" sing N N 660 UFT "C3'" "C2'" sing N N 661 UFT "C2'" "C1'" sing N N 662 UFT "C2'" "H2'" sing N N 663 UFT "C5'" "C4'" sing N N 664 UFT "C5'" "H5'" sing N N 665 UFT "C5'" "H5'A" sing N N 666 UFT "C3'" "C4'" sing N N 667 UFT "C4'" "O4'" sing N N 668 UFT "C4'" "H4'" sing N N 669 UFT "O4'" "C1'" sing N N 670 UFT "C1'" "H1'" sing N N 671 UFT "C3'" "O3'" sing N N 672 UFT "C3'" "H3'" sing N N 673 UFT "O3'" "HO3'" sing N N 674 UFT N3 HN3 sing N N 675 VAL N CA sing N N 676 VAL N H sing N N 677 VAL N H2 sing N N 678 VAL CA C sing N N 679 VAL CA CB sing N N 680 VAL CA HA sing N N 681 VAL C O doub N N 682 VAL C OXT sing N N 683 VAL CB CG1 sing N N 684 VAL CB CG2 sing N N 685 VAL CB HB sing N N 686 VAL CG1 HG11 sing N N 687 VAL CG1 HG12 sing N N 688 VAL CG1 HG13 sing N N 689 VAL CG2 HG21 sing N N 690 VAL CG2 HG22 sing N N 691 VAL CG2 HG23 sing N N 692 VAL OXT HXT sing N N 693 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3DD2 'double helix' 3DD2 'a-form double helix' 3DD2 'hairpin loop' 3DD2 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C G 1 1_555 C CFL 25 1_555 -0.428 -0.065 0.034 -5.517 -2.384 0.342 1 B_G1:CFL25_B B 1 ? B 25 ? 19 1 1 C G 2 1_555 C CFL 24 1_555 -0.540 -0.189 0.183 2.133 -3.715 4.401 2 B_G2:CFL24_B B 2 ? B 24 ? 19 1 1 C G 3 1_555 C CFL 23 1_555 -0.021 -0.217 -0.126 -1.609 -6.544 3.927 3 B_G3:CFL23_B B 3 ? B 23 ? 19 1 1 C A 5 1_555 C A 22 1_555 6.647 -0.661 0.247 -48.632 3.748 56.643 4 B_A5:A22_B B 5 ? B 22 ? ? 5 1 C A 8 1_555 C UFT 21 1_555 -0.119 -0.059 0.143 1.395 -12.534 1.085 5 B_A8:UFT21_B B 8 ? B 21 ? 20 1 1 C A 9 1_555 C UFT 20 1_555 0.160 -0.138 0.514 11.277 -17.665 0.922 6 B_A9:UFT20_B B 9 ? B 20 ? 20 1 1 C G 10 1_555 C CFL 19 1_555 0.010 -0.149 -0.099 -1.324 -8.503 -1.156 7 B_G10:CFL19_B B 10 ? B 19 ? 19 1 1 C CFL 11 1_555 C G 16 1_555 0.281 -0.125 -0.121 9.397 -10.019 0.302 8 B_CFL11:G16_B B 11 ? B 16 ? 19 1 1 C UFT 12 1_555 C A 15 1_555 -3.272 0.802 0.852 11.004 -24.303 93.197 9 B_UFT12:A15_B B 12 ? B 15 ? ? 5 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C G 1 1_555 C CFL 25 1_555 C G 2 1_555 C CFL 24 1_555 0.291 -1.976 3.012 -0.753 2.471 28.896 -4.432 -0.730 2.828 4.940 1.506 29.009 1 BB_G1G2:CFL24CFL25_BB B 1 ? B 25 ? B 2 ? B 24 ? 1 C G 2 1_555 C CFL 24 1_555 C G 3 1_555 C CFL 23 1_555 0.200 -2.019 3.288 2.549 6.068 31.567 -4.664 0.072 2.867 11.004 -4.622 32.229 2 BB_G2G3:CFL23CFL24_BB B 2 ? B 24 ? B 3 ? B 23 ? 1 C G 3 1_555 C CFL 23 1_555 C A 5 1_555 C A 22 1_555 1.204 -0.909 6.630 27.270 20.280 76.192 -1.752 0.513 6.360 15.723 -21.143 82.364 3 BB_G3A5:A22CFL23_BB B 3 ? B 23 ? B 5 ? B 22 ? 1 C A 5 1_555 C A 22 1_555 C A 8 1_555 C UFT 21 1_555 -3.861 -1.276 2.264 20.865 9.808 1.354 -1.553 6.165 -3.896 36.877 -78.450 23.094 4 BB_A5A8:UFT21A22_BB B 5 ? B 22 ? B 8 ? B 21 ? 1 C A 8 1_555 C UFT 21 1_555 C A 9 1_555 C UFT 20 1_555 -0.360 -0.773 2.981 -2.434 0.966 39.022 -1.261 0.272 2.978 1.444 3.639 39.106 5 BB_A8A9:UFT20UFT21_BB B 8 ? B 21 ? B 9 ? B 20 ? 1 C A 9 1_555 C UFT 20 1_555 C G 10 1_555 C CFL 19 1_555 1.305 -2.182 3.528 5.164 6.789 27.862 -5.882 -1.424 3.107 13.699 -10.419 29.114 6 BB_A9G10:CFL19UFT20_BB B 9 ? B 20 ? B 10 ? B 19 ? 1 C G 10 1_555 C CFL 19 1_555 C CFL 11 1_555 C G 16 1_555 1.090 -1.279 3.104 -1.399 -2.427 41.444 -1.557 -1.679 3.134 -3.425 1.974 41.534 7 BB_G10CFL11:G16CFL19_BB B 10 ? B 19 ? B 11 ? B 16 ? 1 C CFL 11 1_555 C G 16 1_555 C UFT 12 1_555 C A 15 1_555 3.338 -1.081 3.049 -1.170 13.818 -1.797 -12.779 12.253 1.740 -82.360 -6.975 -13.983 8 BB_CFL11UFT12:A15G16_BB B 11 ? B 16 ? B 12 ? B 15 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'DI(HYDROXYETHYL)ETHER' PEG 5 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 6 'MAGNESIUM ION' MG 7 'HEXAETHYLENE GLYCOL' P6G 8 'ACETIC ACID' ACY 9 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1PPB _pdbx_initial_refinement_model.details 'PDB ENTRY 1PPB' #