data_3DDE # _entry.id 3DDE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DDE pdb_00003dde 10.2210/pdb3dde/pdb RCSB RCSB047898 ? ? WWPDB D_1000047898 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 370140 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DDE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Domain of Unknown Function with a Heme Oxygenase-like Fold (YP_564736.1) from SHEWANELLA DENITRIFICANS OS-217 at 2.30 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3DDE _cell.length_a 92.810 _cell.length_b 66.000 _cell.length_c 84.380 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DDE _symmetry.Int_Tables_number 18 _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TENA/THI-4 protein, Domain of Unknown Function with a Heme Oxygenase-like Fold' 27380.824 2 ? ? ? ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 3 ? ? ? ? 3 non-polymer syn 'NITRATE ION' 62.005 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 6 water nat water 18.015 74 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SIIDLTKLEQKVAT(MSE)WDSILTNSPFIHEVLDGKATKALYAIY(MSE)TETYHYTKHNAKNQALVGI (MSE)GKDLPGKYLSFCFHHAHEEAGHEL(MSE)ALSDIASIGFDREDVLSSKPLPATETLIAYLYWISATGNPVQRLGY SYWAENVYGYIDPVLKAIQSTLDLTPQS(MSE)KFFIAHSKIDAKHAEEVNE(MSE)LHEVCKTQEDVDSVVAV(MSE)E NSLVLTARILDDVWKEYQLFQSGASDRYAFLRDNA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSIIDLTKLEQKVATMWDSILTNSPFIHEVLDGKATKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYLSFCFHH AHEEAGHELMALSDIASIGFDREDVLSSKPLPATETLIAYLYWISATGNPVQRLGYSYWAENVYGYIDPVLKAIQSTLDL TPQSMKFFIAHSKIDAKHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFLRDNA ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 370140 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 ILE n 1 5 ILE n 1 6 ASP n 1 7 LEU n 1 8 THR n 1 9 LYS n 1 10 LEU n 1 11 GLU n 1 12 GLN n 1 13 LYS n 1 14 VAL n 1 15 ALA n 1 16 THR n 1 17 MSE n 1 18 TRP n 1 19 ASP n 1 20 SER n 1 21 ILE n 1 22 LEU n 1 23 THR n 1 24 ASN n 1 25 SER n 1 26 PRO n 1 27 PHE n 1 28 ILE n 1 29 HIS n 1 30 GLU n 1 31 VAL n 1 32 LEU n 1 33 ASP n 1 34 GLY n 1 35 LYS n 1 36 ALA n 1 37 THR n 1 38 LYS n 1 39 ALA n 1 40 LEU n 1 41 TYR n 1 42 ALA n 1 43 ILE n 1 44 TYR n 1 45 MSE n 1 46 THR n 1 47 GLU n 1 48 THR n 1 49 TYR n 1 50 HIS n 1 51 TYR n 1 52 THR n 1 53 LYS n 1 54 HIS n 1 55 ASN n 1 56 ALA n 1 57 LYS n 1 58 ASN n 1 59 GLN n 1 60 ALA n 1 61 LEU n 1 62 VAL n 1 63 GLY n 1 64 ILE n 1 65 MSE n 1 66 GLY n 1 67 LYS n 1 68 ASP n 1 69 LEU n 1 70 PRO n 1 71 GLY n 1 72 LYS n 1 73 TYR n 1 74 LEU n 1 75 SER n 1 76 PHE n 1 77 CYS n 1 78 PHE n 1 79 HIS n 1 80 HIS n 1 81 ALA n 1 82 HIS n 1 83 GLU n 1 84 GLU n 1 85 ALA n 1 86 GLY n 1 87 HIS n 1 88 GLU n 1 89 LEU n 1 90 MSE n 1 91 ALA n 1 92 LEU n 1 93 SER n 1 94 ASP n 1 95 ILE n 1 96 ALA n 1 97 SER n 1 98 ILE n 1 99 GLY n 1 100 PHE n 1 101 ASP n 1 102 ARG n 1 103 GLU n 1 104 ASP n 1 105 VAL n 1 106 LEU n 1 107 SER n 1 108 SER n 1 109 LYS n 1 110 PRO n 1 111 LEU n 1 112 PRO n 1 113 ALA n 1 114 THR n 1 115 GLU n 1 116 THR n 1 117 LEU n 1 118 ILE n 1 119 ALA n 1 120 TYR n 1 121 LEU n 1 122 TYR n 1 123 TRP n 1 124 ILE n 1 125 SER n 1 126 ALA n 1 127 THR n 1 128 GLY n 1 129 ASN n 1 130 PRO n 1 131 VAL n 1 132 GLN n 1 133 ARG n 1 134 LEU n 1 135 GLY n 1 136 TYR n 1 137 SER n 1 138 TYR n 1 139 TRP n 1 140 ALA n 1 141 GLU n 1 142 ASN n 1 143 VAL n 1 144 TYR n 1 145 GLY n 1 146 TYR n 1 147 ILE n 1 148 ASP n 1 149 PRO n 1 150 VAL n 1 151 LEU n 1 152 LYS n 1 153 ALA n 1 154 ILE n 1 155 GLN n 1 156 SER n 1 157 THR n 1 158 LEU n 1 159 ASP n 1 160 LEU n 1 161 THR n 1 162 PRO n 1 163 GLN n 1 164 SER n 1 165 MSE n 1 166 LYS n 1 167 PHE n 1 168 PHE n 1 169 ILE n 1 170 ALA n 1 171 HIS n 1 172 SER n 1 173 LYS n 1 174 ILE n 1 175 ASP n 1 176 ALA n 1 177 LYS n 1 178 HIS n 1 179 ALA n 1 180 GLU n 1 181 GLU n 1 182 VAL n 1 183 ASN n 1 184 GLU n 1 185 MSE n 1 186 LEU n 1 187 HIS n 1 188 GLU n 1 189 VAL n 1 190 CYS n 1 191 LYS n 1 192 THR n 1 193 GLN n 1 194 GLU n 1 195 ASP n 1 196 VAL n 1 197 ASP n 1 198 SER n 1 199 VAL n 1 200 VAL n 1 201 ALA n 1 202 VAL n 1 203 MSE n 1 204 GLU n 1 205 ASN n 1 206 SER n 1 207 LEU n 1 208 VAL n 1 209 LEU n 1 210 THR n 1 211 ALA n 1 212 ARG n 1 213 ILE n 1 214 LEU n 1 215 ASP n 1 216 ASP n 1 217 VAL n 1 218 TRP n 1 219 LYS n 1 220 GLU n 1 221 TYR n 1 222 GLN n 1 223 LEU n 1 224 PHE n 1 225 GLN n 1 226 SER n 1 227 GLY n 1 228 ALA n 1 229 SER n 1 230 ASP n 1 231 ARG n 1 232 TYR n 1 233 ALA n 1 234 PHE n 1 235 LEU n 1 236 ARG n 1 237 ASP n 1 238 ASN n 1 239 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_564736.1, Sden_3740' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella denitrificans OS217' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 318161 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q12HR3_SHEDO _struct_ref.pdbx_db_accession Q12HR3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSIIDLTKLEQKVATMWDSILTNSPFIHEVLDGKATKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYLSFCFHHA HEEAGHELMALSDIASIGFDREDVLSSKPLPATETLIAYLYWISATGNPVQRLGYSYWAENVYGYIDPVLKAIQSTLDLT PQSMKFFIAHSKIDAKHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFLRDNA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DDE A 2 ? 239 ? Q12HR3 1 ? 238 ? 1 238 2 1 3DDE B 2 ? 239 ? Q12HR3 1 ? 238 ? 1 238 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DDE GLY A 1 ? UNP Q12HR3 ? ? 'expression tag' 0 1 2 3DDE GLY B 1 ? UNP Q12HR3 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DDE # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 47.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20.0% polyethylene glycol 3350, 0.269M magnesium nitrate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-03-16 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97932 1.0 3 0.97918 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97932,0.97918 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DDE _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 29.173 _reflns.number_obs 23523 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_netI_over_sigmaI 12.600 _reflns.percent_possible_obs 97.600 _reflns.B_iso_Wilson_estimate 47.797 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.30 2.38 7442 ? 3887 0.433 1.9 ? ? ? ? ? 88.80 1 1 2.38 2.48 8959 ? 4644 0.332 2.5 ? ? ? ? ? 99.00 2 1 2.48 2.59 8340 ? 4319 0.242 3.4 ? ? ? ? ? 99.00 3 1 2.59 2.73 8826 ? 4552 0.190 4.3 ? ? ? ? ? 98.90 4 1 2.73 2.90 8550 ? 4419 0.116 6.6 ? ? ? ? ? 99.20 5 1 2.90 3.12 8396 ? 4334 0.083 9.2 ? ? ? ? ? 99.20 6 1 3.12 3.43 8479 ? 4372 0.050 14.1 ? ? ? ? ? 98.80 7 1 3.43 3.93 8732 ? 4496 0.030 22.0 ? ? ? ? ? 98.70 8 1 3.93 4.93 8508 ? 4355 0.023 28.9 ? ? ? ? ? 98.30 9 1 4.93 ? 8693 ? 4407 0.020 32.4 ? ? ? ? ? 96.50 10 1 # _refine.entry_id 3DDE _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 29.173 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.360 _refine.ls_number_reflns_obs 23503 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. NITRATE, 1,2-ETHANEDIOL, PEG AND PGE WERE MODELED BASED ON CRYSTALLIZATION AND CRYOPROTECTION CONDITIONS. 5. AMINO ACID SER 225 IN CHAINS A AND B ARE RAMACHADRAN OUTLIERS IN A REGION OF ELECTRON DENSITY THAT IS DIFFICULT TO MODEL. 6. THERE IS UNMODELED ELECTRON DENSITY NEAR AMINO ACIDS GLU 83, HIS 86, GLU 140 AND HIS 170 IN BOTH PROTOMERS. ; _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_R_work 0.220 _refine.ls_R_factor_R_free 0.253 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1206 _refine.B_iso_mean 42.692 _refine.aniso_B[1][1] 3.080 _refine.aniso_B[2][2] -1.740 _refine.aniso_B[3][3] -1.340 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.924 _refine.pdbx_overall_ESU_R 0.370 _refine.pdbx_overall_ESU_R_Free 0.243 _refine.overall_SU_ML 0.212 _refine.overall_SU_B 17.745 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3555 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 3668 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 29.173 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3770 0.012 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 2381 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 5142 1.340 1.944 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 5838 1.001 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 483 2.884 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 159 33.655 24.465 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 574 11.435 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 10 19.040 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 588 0.090 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 4243 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 759 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 921 0.210 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 2275 0.169 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1861 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1572 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 82 0.150 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 6 0.151 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 17 0.264 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 4 0.169 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2587 0.679 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 953 0.260 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3802 1.001 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1566 0.700 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1335 1.028 3.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'TIGHT POSITIONAL' A 1166 0.030 0.050 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'MEDIUM POSITIONAL' A 1316 0.140 0.500 1 'X-RAY DIFFRACTION' 2 ? ? ? 1 'LOOSE POSITIONAL' A 445 0.720 5.000 1 'X-RAY DIFFRACTION' 3 ? ? ? 1 'TIGHT THERMAL' A 1166 0.100 0.500 1 'X-RAY DIFFRACTION' 4 ? ? ? 1 'MEDIUM THERMAL' A 1316 0.410 2.000 1 'X-RAY DIFFRACTION' 5 ? ? ? 1 'LOOSE THERMAL' A 445 1.520 10.000 1 'X-RAY DIFFRACTION' 6 ? ? ? # _refine_ls_shell.d_res_high 2.301 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.870 _refine_ls_shell.number_reflns_R_work 1583 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.R_factor_R_free 0.349 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 86 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1669 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 A 1 4 B 1 5 A 1 6 B 1 7 A 1 8 B 1 9 A 1 10 B 1 11 A 1 12 B 1 13 A 1 14 B 1 15 A 1 16 B 1 17 A 1 18 B 1 19 A 1 20 B 1 21 A 1 22 B 1 23 A 1 24 B 1 25 A 1 26 B 1 27 A 1 28 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 3 A 31 2 . . SER VAL A 2 A 30 1 ? 2 1 B 3 B 31 2 . . SER VAL B 2 B 30 1 ? 3 2 A 32 A 35 6 . . LEU LYS A 31 A 34 1 ? 4 2 B 32 B 35 6 . . LEU LYS B 31 B 34 1 ? 5 3 A 36 A 85 2 . . ALA ALA A 35 A 84 1 ? 6 3 B 36 B 85 2 . . ALA ALA B 35 B 84 1 ? 7 4 A 86 A 86 6 . . GLY GLY A 85 A 85 1 ? 8 4 B 86 B 86 6 . . GLY GLY B 85 B 85 1 ? 9 5 A 87 A 101 2 . . HIS ASP A 86 A 100 1 ? 10 5 B 87 B 101 2 . . HIS ASP B 86 B 100 1 ? 11 6 A 102 A 102 6 . . ARG ARG A 101 A 101 1 ? 12 6 B 102 B 102 6 . . ARG ARG B 101 B 101 1 ? 13 7 A 103 A 140 2 . . GLU ALA A 102 A 139 1 ? 14 7 B 103 B 140 2 . . GLU ALA B 102 B 139 1 ? 15 8 A 141 A 146 6 . . GLU TYR A 140 A 145 1 ? 16 8 B 141 B 146 6 . . GLU TYR B 140 B 145 1 ? 17 9 A 147 A 168 2 . . ILE PHE A 146 A 167 1 ? 18 9 B 147 B 168 2 . . ILE PHE B 146 B 167 1 ? 19 10 A 169 A 177 6 . . ILE LYS A 168 A 176 1 ? 20 10 B 169 B 177 6 . . ILE LYS B 168 B 176 1 ? 21 11 A 178 A 187 2 . . HIS HIS A 177 A 186 1 ? 22 11 B 178 B 187 2 . . HIS HIS B 177 B 186 1 ? 23 12 A 188 A 188 6 . . GLU GLU A 187 A 187 1 ? 24 12 B 188 B 188 6 . . GLU GLU B 187 B 187 1 ? 25 13 A 189 A 221 2 . . VAL TYR A 188 A 220 1 ? 26 13 B 189 B 221 2 . . VAL TYR B 188 B 220 1 ? 27 14 A 222 A 233 6 . . GLN ALA A 221 A 232 1 ? 28 14 B 222 B 233 6 . . GLN ALA B 221 B 232 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3DDE _struct.title ;Crystal structure of a domain of unknown function with a heme oxygenase-like fold (sden_3740) from shewanella denitrificans os217 at 2.30 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3DDE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 5 ? H N N 2 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ;AUTHORS STATE THAT THE PROTOMER MAY FORM A TETRAMER BASED ON CRYSTAL PACKING ANALYSIS. SIZE-EXCLUSION CHROMATOGRAPHY COUPLED WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A TETRAMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? SER A 25 ? ASP A 5 SER A 24 1 ? 20 HELX_P HELX_P2 2 SER A 25 ? ASP A 33 ? SER A 24 ASP A 32 1 ? 9 HELX_P HELX_P3 3 THR A 37 ? LYS A 53 ? THR A 36 LYS A 52 1 ? 17 HELX_P HELX_P4 4 HIS A 54 ? GLY A 66 ? HIS A 53 GLY A 65 1 ? 13 HELX_P HELX_P5 5 PRO A 70 ? ALA A 85 ? PRO A 69 ALA A 84 1 ? 16 HELX_P HELX_P6 6 HIS A 87 ? ILE A 98 ? HIS A 86 ILE A 97 1 ? 12 HELX_P HELX_P7 7 ASP A 101 ? SER A 107 ? ASP A 100 SER A 106 1 ? 7 HELX_P HELX_P8 8 LEU A 111 ? THR A 127 ? LEU A 110 THR A 126 1 ? 17 HELX_P HELX_P9 9 ASN A 129 ? GLN A 132 ? ASN A 128 GLN A 131 5 ? 4 HELX_P HELX_P10 10 ARG A 133 ? ASN A 142 ? ARG A 132 ASN A 141 1 ? 10 HELX_P HELX_P11 11 VAL A 143 ? LEU A 158 ? VAL A 142 LEU A 157 1 ? 16 HELX_P HELX_P12 12 THR A 161 ? SER A 164 ? THR A 160 SER A 163 5 ? 4 HELX_P HELX_P13 13 MSE A 165 ? CYS A 190 ? MSE A 164 CYS A 189 1 ? 26 HELX_P HELX_P14 14 THR A 192 ? PHE A 224 ? THR A 191 PHE A 223 1 ? 33 HELX_P HELX_P15 15 ASP B 6 ? SER B 25 ? ASP B 5 SER B 24 1 ? 20 HELX_P HELX_P16 16 SER B 25 ? ASP B 33 ? SER B 24 ASP B 32 1 ? 9 HELX_P HELX_P17 17 THR B 37 ? LYS B 53 ? THR B 36 LYS B 52 1 ? 17 HELX_P HELX_P18 18 HIS B 54 ? GLY B 66 ? HIS B 53 GLY B 65 1 ? 13 HELX_P HELX_P19 19 PRO B 70 ? ALA B 85 ? PRO B 69 ALA B 84 1 ? 16 HELX_P HELX_P20 20 HIS B 87 ? ILE B 98 ? HIS B 86 ILE B 97 1 ? 12 HELX_P HELX_P21 21 ASP B 101 ? SER B 107 ? ASP B 100 SER B 106 1 ? 7 HELX_P HELX_P22 22 LEU B 111 ? THR B 127 ? LEU B 110 THR B 126 1 ? 17 HELX_P HELX_P23 23 ASN B 129 ? VAL B 131 ? ASN B 128 VAL B 130 5 ? 3 HELX_P HELX_P24 24 GLN B 132 ? GLU B 141 ? GLN B 131 GLU B 140 1 ? 10 HELX_P HELX_P25 25 VAL B 143 ? LEU B 158 ? VAL B 142 LEU B 157 1 ? 16 HELX_P HELX_P26 26 THR B 161 ? SER B 164 ? THR B 160 SER B 163 5 ? 4 HELX_P HELX_P27 27 MSE B 165 ? ALA B 170 ? MSE B 164 ALA B 169 1 ? 6 HELX_P HELX_P28 28 HIS B 171 ? CYS B 190 ? HIS B 170 CYS B 189 1 ? 20 HELX_P HELX_P29 29 THR B 192 ? GLN B 225 ? THR B 191 GLN B 224 1 ? 34 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A THR 16 C ? ? ? 1_555 A MSE 17 N ? ? A THR 15 A MSE 16 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 17 C ? ? ? 1_555 A TRP 18 N ? ? A MSE 16 A TRP 17 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A TYR 44 C ? ? ? 1_555 A MSE 45 N ? ? A TYR 43 A MSE 44 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MSE 45 C ? ? ? 1_555 A THR 46 N ? ? A MSE 44 A THR 45 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale5 covale both ? A ILE 64 C ? ? ? 1_555 A MSE 65 N ? ? A ILE 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale6 covale both ? A MSE 65 C ? ? ? 1_555 A GLY 66 N ? ? A MSE 64 A GLY 65 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale7 covale both ? A LEU 89 C ? ? ? 1_555 A MSE 90 N ? ? A LEU 88 A MSE 89 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale8 covale both ? A MSE 90 C ? ? ? 1_555 A ALA 91 N ? ? A MSE 89 A ALA 90 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale9 covale both ? A SER 164 C ? ? ? 1_555 A MSE 165 N ? ? A SER 163 A MSE 164 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale10 covale both ? A MSE 165 C ? ? ? 1_555 A LYS 166 N ? ? A MSE 164 A LYS 165 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale11 covale both ? A GLU 184 C ? ? ? 1_555 A MSE 185 N ? ? A GLU 183 A MSE 184 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale12 covale both ? A MSE 185 C ? ? ? 1_555 A LEU 186 N ? ? A MSE 184 A LEU 185 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale13 covale both ? A VAL 202 C ? ? ? 1_555 A MSE 203 N ? ? A VAL 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale14 covale both ? A MSE 203 C ? ? ? 1_555 A GLU 204 N ? ? A MSE 202 A GLU 203 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? B THR 16 C ? ? ? 1_555 B MSE 17 N ? ? B THR 15 B MSE 16 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale16 covale both ? B MSE 17 C ? ? ? 1_555 B TRP 18 N ? ? B MSE 16 B TRP 17 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale17 covale both ? B TYR 44 C ? ? ? 1_555 B MSE 45 N ? ? B TYR 43 B MSE 44 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale18 covale both ? B MSE 45 C ? ? ? 1_555 B THR 46 N ? ? B MSE 44 B THR 45 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale19 covale both ? B ILE 64 C ? ? ? 1_555 B MSE 65 N ? ? B ILE 63 B MSE 64 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale20 covale both ? B MSE 65 C ? ? ? 1_555 B GLY 66 N ? ? B MSE 64 B GLY 65 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale21 covale both ? B LEU 89 C ? ? ? 1_555 B MSE 90 N A ? B LEU 88 B MSE 89 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale22 covale both ? B LEU 89 C ? ? ? 1_555 B MSE 90 N B ? B LEU 88 B MSE 89 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale23 covale both ? B MSE 90 C A ? ? 1_555 B ALA 91 N ? ? B MSE 89 B ALA 90 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale24 covale both ? B MSE 90 C B ? ? 1_555 B ALA 91 N ? ? B MSE 89 B ALA 90 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale25 covale both ? B SER 164 C ? ? ? 1_555 B MSE 165 N ? ? B SER 163 B MSE 164 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale26 covale both ? B MSE 165 C ? ? ? 1_555 B LYS 166 N ? ? B MSE 164 B LYS 165 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale27 covale both ? B GLU 184 C ? ? ? 1_555 B MSE 185 N ? ? B GLU 183 B MSE 184 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale28 covale both ? B MSE 185 C ? ? ? 1_555 B LEU 186 N ? ? B MSE 184 B LEU 185 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale29 covale both ? B VAL 202 C ? ? ? 1_555 B MSE 203 N ? ? B VAL 201 B MSE 202 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale30 covale both ? B MSE 203 C ? ? ? 1_555 B GLU 204 N ? ? B MSE 202 B GLU 203 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NO3 239 ? 6 'BINDING SITE FOR RESIDUE NO3 B 239' AC2 Software B EDO 240 ? 4 'BINDING SITE FOR RESIDUE EDO B 240' AC3 Software B PGE 241 ? 2 'BINDING SITE FOR RESIDUE PGE B 241' AC4 Software A PEG 239 ? 3 'BINDING SITE FOR RESIDUE PEG A 239' AC5 Software B PEG 242 ? 7 'BINDING SITE FOR RESIDUE PEG B 242' AC6 Software A PEG 240 ? 2 'BINDING SITE FOR RESIDUE PEG A 240' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN B 55 ? ASN B 54 . ? 1_555 ? 2 AC1 6 ARG B 133 ? ARG B 132 . ? 1_555 ? 3 AC1 6 TYR B 136 ? TYR B 135 . ? 1_555 ? 4 AC1 6 SER B 137 ? SER B 136 . ? 1_555 ? 5 AC1 6 GLU B 141 ? GLU B 140 . ? 1_555 ? 6 AC1 6 HOH J . ? HOH B 285 . ? 1_555 ? 7 AC2 4 ASP B 6 ? ASP B 5 . ? 1_555 ? 8 AC2 4 LYS B 9 ? LYS B 8 . ? 1_555 ? 9 AC2 4 LEU B 10 ? LEU B 9 . ? 1_555 ? 10 AC2 4 LYS B 13 ? LYS B 12 . ? 1_555 ? 11 AC3 2 TYR B 44 ? TYR B 43 . ? 1_555 ? 12 AC3 2 TYR B 51 ? TYR B 50 . ? 1_555 ? 13 AC4 3 TYR A 122 ? TYR A 121 . ? 2_565 ? 14 AC4 3 HOH I . ? HOH A 268 . ? 2_565 ? 15 AC4 3 ILE B 64 ? ILE B 63 . ? 2_565 ? 16 AC5 7 GLU B 115 ? GLU B 114 . ? 2_565 ? 17 AC5 7 TYR B 120 ? TYR B 119 . ? 1_555 ? 18 AC5 7 TRP B 123 ? TRP B 122 . ? 1_555 ? 19 AC5 7 ILE B 124 ? ILE B 123 . ? 1_555 ? 20 AC5 7 THR B 127 ? THR B 126 . ? 1_555 ? 21 AC5 7 GLY B 128 ? GLY B 127 . ? 1_555 ? 22 AC5 7 GLN B 132 ? GLN B 131 . ? 1_555 ? 23 AC6 2 ILE A 64 ? ILE A 63 . ? 1_555 ? 24 AC6 2 TYR B 122 ? TYR B 121 . ? 1_555 ? # _atom_sites.entry_id 3DDE _atom_sites.fract_transf_matrix[1][1] 0.010775 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015152 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011851 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 ASP 6 5 5 ASP ASP A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 LEU 10 9 9 LEU LEU A . n A 1 11 GLU 11 10 10 GLU GLU A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 THR 16 15 15 THR THR A . n A 1 17 MSE 17 16 16 MSE MSE A . n A 1 18 TRP 18 17 17 TRP TRP A . n A 1 19 ASP 19 18 18 ASP ASP A . n A 1 20 SER 20 19 19 SER SER A . n A 1 21 ILE 21 20 20 ILE ILE A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 SER 25 24 24 SER SER A . n A 1 26 PRO 26 25 25 PRO PRO A . n A 1 27 PHE 27 26 26 PHE PHE A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 HIS 29 28 28 HIS HIS A . n A 1 30 GLU 30 29 29 GLU GLU A . n A 1 31 VAL 31 30 30 VAL VAL A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 ASP 33 32 32 ASP ASP A . n A 1 34 GLY 34 33 33 GLY GLY A . n A 1 35 LYS 35 34 34 LYS LYS A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 THR 37 36 36 THR THR A . n A 1 38 LYS 38 37 37 LYS LYS A . n A 1 39 ALA 39 38 38 ALA ALA A . n A 1 40 LEU 40 39 39 LEU LEU A . n A 1 41 TYR 41 40 40 TYR TYR A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 TYR 44 43 43 TYR TYR A . n A 1 45 MSE 45 44 44 MSE MSE A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 THR 48 47 47 THR THR A . n A 1 49 TYR 49 48 48 TYR TYR A . n A 1 50 HIS 50 49 49 HIS HIS A . n A 1 51 TYR 51 50 50 TYR TYR A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 ASN 55 54 54 ASN ASN A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 LYS 57 56 56 LYS LYS A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 GLN 59 58 58 GLN GLN A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 ILE 64 63 63 ILE ILE A . n A 1 65 MSE 65 64 64 MSE MSE A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 LEU 69 68 68 LEU LEU A . n A 1 70 PRO 70 69 69 PRO PRO A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 LYS 72 71 71 LYS LYS A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 LEU 74 73 73 LEU LEU A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 PHE 76 75 75 PHE PHE A . n A 1 77 CYS 77 76 76 CYS CYS A . n A 1 78 PHE 78 77 77 PHE PHE A . n A 1 79 HIS 79 78 78 HIS HIS A . n A 1 80 HIS 80 79 79 HIS HIS A . n A 1 81 ALA 81 80 80 ALA ALA A . n A 1 82 HIS 82 81 81 HIS HIS A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 ALA 85 84 84 ALA ALA A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 HIS 87 86 86 HIS HIS A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 MSE 90 89 89 MSE MSE A . n A 1 91 ALA 91 90 90 ALA ALA A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 SER 93 92 92 SER SER A . n A 1 94 ASP 94 93 93 ASP ASP A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 ALA 96 95 95 ALA ALA A . n A 1 97 SER 97 96 96 SER SER A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 GLY 99 98 98 GLY GLY A . n A 1 100 PHE 100 99 99 PHE PHE A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 ARG 102 101 101 ARG ARG A . n A 1 103 GLU 103 102 102 GLU GLU A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 VAL 105 104 104 VAL VAL A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 PRO 110 109 109 PRO PRO A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 PRO 112 111 111 PRO PRO A . n A 1 113 ALA 113 112 112 ALA ALA A . n A 1 114 THR 114 113 113 THR THR A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 LEU 117 116 116 LEU LEU A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 TYR 120 119 119 TYR TYR A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 TYR 122 121 121 TYR TYR A . n A 1 123 TRP 123 122 122 TRP TRP A . n A 1 124 ILE 124 123 123 ILE ILE A . n A 1 125 SER 125 124 124 SER SER A . n A 1 126 ALA 126 125 125 ALA ALA A . n A 1 127 THR 127 126 126 THR THR A . n A 1 128 GLY 128 127 127 GLY GLY A . n A 1 129 ASN 129 128 128 ASN ASN A . n A 1 130 PRO 130 129 129 PRO PRO A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 GLN 132 131 131 GLN GLN A . n A 1 133 ARG 133 132 132 ARG ARG A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 GLY 135 134 134 GLY GLY A . n A 1 136 TYR 136 135 135 TYR TYR A . n A 1 137 SER 137 136 136 SER SER A . n A 1 138 TYR 138 137 137 TYR TYR A . n A 1 139 TRP 139 138 138 TRP TRP A . n A 1 140 ALA 140 139 139 ALA ALA A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 ASN 142 141 141 ASN ASN A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 TYR 144 143 143 TYR TYR A . n A 1 145 GLY 145 144 144 GLY GLY A . n A 1 146 TYR 146 145 145 TYR TYR A . n A 1 147 ILE 147 146 146 ILE ILE A . n A 1 148 ASP 148 147 147 ASP ASP A . n A 1 149 PRO 149 148 148 PRO PRO A . n A 1 150 VAL 150 149 149 VAL VAL A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 LYS 152 151 151 LYS LYS A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 ILE 154 153 153 ILE ILE A . n A 1 155 GLN 155 154 154 GLN GLN A . n A 1 156 SER 156 155 155 SER SER A . n A 1 157 THR 157 156 156 THR THR A . n A 1 158 LEU 158 157 157 LEU LEU A . n A 1 159 ASP 159 158 158 ASP ASP A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 THR 161 160 160 THR THR A . n A 1 162 PRO 162 161 161 PRO PRO A . n A 1 163 GLN 163 162 162 GLN GLN A . n A 1 164 SER 164 163 163 SER SER A . n A 1 165 MSE 165 164 164 MSE MSE A . n A 1 166 LYS 166 165 165 LYS LYS A . n A 1 167 PHE 167 166 166 PHE PHE A . n A 1 168 PHE 168 167 167 PHE PHE A . n A 1 169 ILE 169 168 168 ILE ILE A . n A 1 170 ALA 170 169 169 ALA ALA A . n A 1 171 HIS 171 170 170 HIS HIS A . n A 1 172 SER 172 171 171 SER SER A . n A 1 173 LYS 173 172 172 LYS LYS A . n A 1 174 ILE 174 173 173 ILE ILE A . n A 1 175 ASP 175 174 174 ASP ASP A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 LYS 177 176 176 LYS LYS A . n A 1 178 HIS 178 177 177 HIS HIS A . n A 1 179 ALA 179 178 178 ALA ALA A . n A 1 180 GLU 180 179 179 GLU GLU A . n A 1 181 GLU 181 180 180 GLU GLU A . n A 1 182 VAL 182 181 181 VAL VAL A . n A 1 183 ASN 183 182 182 ASN ASN A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 MSE 185 184 184 MSE MSE A . n A 1 186 LEU 186 185 185 LEU LEU A . n A 1 187 HIS 187 186 186 HIS HIS A . n A 1 188 GLU 188 187 187 GLU GLU A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 CYS 190 189 189 CYS CYS A . n A 1 191 LYS 191 190 190 LYS LYS A . n A 1 192 THR 192 191 191 THR THR A . n A 1 193 GLN 193 192 192 GLN GLN A . n A 1 194 GLU 194 193 193 GLU GLU A . n A 1 195 ASP 195 194 194 ASP ASP A . n A 1 196 VAL 196 195 195 VAL VAL A . n A 1 197 ASP 197 196 196 ASP ASP A . n A 1 198 SER 198 197 197 SER SER A . n A 1 199 VAL 199 198 198 VAL VAL A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 ALA 201 200 200 ALA ALA A . n A 1 202 VAL 202 201 201 VAL VAL A . n A 1 203 MSE 203 202 202 MSE MSE A . n A 1 204 GLU 204 203 203 GLU GLU A . n A 1 205 ASN 205 204 204 ASN ASN A . n A 1 206 SER 206 205 205 SER SER A . n A 1 207 LEU 207 206 206 LEU LEU A . n A 1 208 VAL 208 207 207 VAL VAL A . n A 1 209 LEU 209 208 208 LEU LEU A . n A 1 210 THR 210 209 209 THR THR A . n A 1 211 ALA 211 210 210 ALA ALA A . n A 1 212 ARG 212 211 211 ARG ARG A . n A 1 213 ILE 213 212 212 ILE ILE A . n A 1 214 LEU 214 213 213 LEU LEU A . n A 1 215 ASP 215 214 214 ASP ASP A . n A 1 216 ASP 216 215 215 ASP ASP A . n A 1 217 VAL 217 216 216 VAL VAL A . n A 1 218 TRP 218 217 217 TRP TRP A . n A 1 219 LYS 219 218 218 LYS LYS A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 TYR 221 220 220 TYR TYR A . n A 1 222 GLN 222 221 221 GLN GLN A . n A 1 223 LEU 223 222 222 LEU LEU A . n A 1 224 PHE 224 223 223 PHE PHE A . n A 1 225 GLN 225 224 224 GLN GLN A . n A 1 226 SER 226 225 225 SER SER A . n A 1 227 GLY 227 226 226 GLY GLY A . n A 1 228 ALA 228 227 227 ALA ALA A . n A 1 229 SER 229 228 228 SER SER A . n A 1 230 ASP 230 229 229 ASP ASP A . n A 1 231 ARG 231 230 230 ARG ARG A . n A 1 232 TYR 232 231 231 TYR TYR A . n A 1 233 ALA 233 232 232 ALA ALA A . n A 1 234 PHE 234 233 233 PHE PHE A . n A 1 235 LEU 235 234 ? ? ? A . n A 1 236 ARG 236 235 ? ? ? A . n A 1 237 ASP 237 236 ? ? ? A . n A 1 238 ASN 238 237 ? ? ? A . n A 1 239 ALA 239 238 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 SER 3 2 2 SER SER B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 ILE 5 4 4 ILE ILE B . n B 1 6 ASP 6 5 5 ASP ASP B . n B 1 7 LEU 7 6 6 LEU LEU B . n B 1 8 THR 8 7 7 THR THR B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 LEU 10 9 9 LEU LEU B . n B 1 11 GLU 11 10 10 GLU GLU B . n B 1 12 GLN 12 11 11 GLN GLN B . n B 1 13 LYS 13 12 12 LYS LYS B . n B 1 14 VAL 14 13 13 VAL VAL B . n B 1 15 ALA 15 14 14 ALA ALA B . n B 1 16 THR 16 15 15 THR THR B . n B 1 17 MSE 17 16 16 MSE MSE B . n B 1 18 TRP 18 17 17 TRP TRP B . n B 1 19 ASP 19 18 18 ASP ASP B . n B 1 20 SER 20 19 19 SER SER B . n B 1 21 ILE 21 20 20 ILE ILE B . n B 1 22 LEU 22 21 21 LEU LEU B . n B 1 23 THR 23 22 22 THR THR B . n B 1 24 ASN 24 23 23 ASN ASN B . n B 1 25 SER 25 24 24 SER SER B . n B 1 26 PRO 26 25 25 PRO PRO B . n B 1 27 PHE 27 26 26 PHE PHE B . n B 1 28 ILE 28 27 27 ILE ILE B . n B 1 29 HIS 29 28 28 HIS HIS B . n B 1 30 GLU 30 29 29 GLU GLU B . n B 1 31 VAL 31 30 30 VAL VAL B . n B 1 32 LEU 32 31 31 LEU LEU B . n B 1 33 ASP 33 32 32 ASP ASP B . n B 1 34 GLY 34 33 33 GLY GLY B . n B 1 35 LYS 35 34 34 LYS LYS B . n B 1 36 ALA 36 35 35 ALA ALA B . n B 1 37 THR 37 36 36 THR THR B . n B 1 38 LYS 38 37 37 LYS LYS B . n B 1 39 ALA 39 38 38 ALA ALA B . n B 1 40 LEU 40 39 39 LEU LEU B . n B 1 41 TYR 41 40 40 TYR TYR B . n B 1 42 ALA 42 41 41 ALA ALA B . n B 1 43 ILE 43 42 42 ILE ILE B . n B 1 44 TYR 44 43 43 TYR TYR B . n B 1 45 MSE 45 44 44 MSE MSE B . n B 1 46 THR 46 45 45 THR THR B . n B 1 47 GLU 47 46 46 GLU GLU B . n B 1 48 THR 48 47 47 THR THR B . n B 1 49 TYR 49 48 48 TYR TYR B . n B 1 50 HIS 50 49 49 HIS HIS B . n B 1 51 TYR 51 50 50 TYR TYR B . n B 1 52 THR 52 51 51 THR THR B . n B 1 53 LYS 53 52 52 LYS LYS B . n B 1 54 HIS 54 53 53 HIS HIS B . n B 1 55 ASN 55 54 54 ASN ASN B . n B 1 56 ALA 56 55 55 ALA ALA B . n B 1 57 LYS 57 56 56 LYS LYS B . n B 1 58 ASN 58 57 57 ASN ASN B . n B 1 59 GLN 59 58 58 GLN GLN B . n B 1 60 ALA 60 59 59 ALA ALA B . n B 1 61 LEU 61 60 60 LEU LEU B . n B 1 62 VAL 62 61 61 VAL VAL B . n B 1 63 GLY 63 62 62 GLY GLY B . n B 1 64 ILE 64 63 63 ILE ILE B . n B 1 65 MSE 65 64 64 MSE MSE B . n B 1 66 GLY 66 65 65 GLY GLY B . n B 1 67 LYS 67 66 66 LYS LYS B . n B 1 68 ASP 68 67 67 ASP ASP B . n B 1 69 LEU 69 68 68 LEU LEU B . n B 1 70 PRO 70 69 69 PRO PRO B . n B 1 71 GLY 71 70 70 GLY GLY B . n B 1 72 LYS 72 71 71 LYS LYS B . n B 1 73 TYR 73 72 72 TYR TYR B . n B 1 74 LEU 74 73 73 LEU LEU B . n B 1 75 SER 75 74 74 SER SER B . n B 1 76 PHE 76 75 75 PHE PHE B . n B 1 77 CYS 77 76 76 CYS CYS B . n B 1 78 PHE 78 77 77 PHE PHE B . n B 1 79 HIS 79 78 78 HIS HIS B . n B 1 80 HIS 80 79 79 HIS HIS B . n B 1 81 ALA 81 80 80 ALA ALA B . n B 1 82 HIS 82 81 81 HIS HIS B . n B 1 83 GLU 83 82 82 GLU GLU B . n B 1 84 GLU 84 83 83 GLU GLU B . n B 1 85 ALA 85 84 84 ALA ALA B . n B 1 86 GLY 86 85 85 GLY GLY B . n B 1 87 HIS 87 86 86 HIS HIS B . n B 1 88 GLU 88 87 87 GLU GLU B . n B 1 89 LEU 89 88 88 LEU LEU B . n B 1 90 MSE 90 89 89 MSE MSE B . n B 1 91 ALA 91 90 90 ALA ALA B . n B 1 92 LEU 92 91 91 LEU LEU B . n B 1 93 SER 93 92 92 SER SER B . n B 1 94 ASP 94 93 93 ASP ASP B . n B 1 95 ILE 95 94 94 ILE ILE B . n B 1 96 ALA 96 95 95 ALA ALA B . n B 1 97 SER 97 96 96 SER SER B . n B 1 98 ILE 98 97 97 ILE ILE B . n B 1 99 GLY 99 98 98 GLY GLY B . n B 1 100 PHE 100 99 99 PHE PHE B . n B 1 101 ASP 101 100 100 ASP ASP B . n B 1 102 ARG 102 101 101 ARG ARG B . n B 1 103 GLU 103 102 102 GLU GLU B . n B 1 104 ASP 104 103 103 ASP ASP B . n B 1 105 VAL 105 104 104 VAL VAL B . n B 1 106 LEU 106 105 105 LEU LEU B . n B 1 107 SER 107 106 106 SER SER B . n B 1 108 SER 108 107 107 SER SER B . n B 1 109 LYS 109 108 108 LYS LYS B . n B 1 110 PRO 110 109 109 PRO PRO B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 PRO 112 111 111 PRO PRO B . n B 1 113 ALA 113 112 112 ALA ALA B . n B 1 114 THR 114 113 113 THR THR B . n B 1 115 GLU 115 114 114 GLU GLU B . n B 1 116 THR 116 115 115 THR THR B . n B 1 117 LEU 117 116 116 LEU LEU B . n B 1 118 ILE 118 117 117 ILE ILE B . n B 1 119 ALA 119 118 118 ALA ALA B . n B 1 120 TYR 120 119 119 TYR TYR B . n B 1 121 LEU 121 120 120 LEU LEU B . n B 1 122 TYR 122 121 121 TYR TYR B . n B 1 123 TRP 123 122 122 TRP TRP B . n B 1 124 ILE 124 123 123 ILE ILE B . n B 1 125 SER 125 124 124 SER SER B . n B 1 126 ALA 126 125 125 ALA ALA B . n B 1 127 THR 127 126 126 THR THR B . n B 1 128 GLY 128 127 127 GLY GLY B . n B 1 129 ASN 129 128 128 ASN ASN B . n B 1 130 PRO 130 129 129 PRO PRO B . n B 1 131 VAL 131 130 130 VAL VAL B . n B 1 132 GLN 132 131 131 GLN GLN B . n B 1 133 ARG 133 132 132 ARG ARG B . n B 1 134 LEU 134 133 133 LEU LEU B . n B 1 135 GLY 135 134 134 GLY GLY B . n B 1 136 TYR 136 135 135 TYR TYR B . n B 1 137 SER 137 136 136 SER SER B . n B 1 138 TYR 138 137 137 TYR TYR B . n B 1 139 TRP 139 138 138 TRP TRP B . n B 1 140 ALA 140 139 139 ALA ALA B . n B 1 141 GLU 141 140 140 GLU GLU B . n B 1 142 ASN 142 141 141 ASN ASN B . n B 1 143 VAL 143 142 142 VAL VAL B . n B 1 144 TYR 144 143 143 TYR TYR B . n B 1 145 GLY 145 144 144 GLY GLY B . n B 1 146 TYR 146 145 145 TYR TYR B . n B 1 147 ILE 147 146 146 ILE ILE B . n B 1 148 ASP 148 147 147 ASP ASP B . n B 1 149 PRO 149 148 148 PRO PRO B . n B 1 150 VAL 150 149 149 VAL VAL B . n B 1 151 LEU 151 150 150 LEU LEU B . n B 1 152 LYS 152 151 151 LYS LYS B . n B 1 153 ALA 153 152 152 ALA ALA B . n B 1 154 ILE 154 153 153 ILE ILE B . n B 1 155 GLN 155 154 154 GLN GLN B . n B 1 156 SER 156 155 155 SER SER B . n B 1 157 THR 157 156 156 THR THR B . n B 1 158 LEU 158 157 157 LEU LEU B . n B 1 159 ASP 159 158 158 ASP ASP B . n B 1 160 LEU 160 159 159 LEU LEU B . n B 1 161 THR 161 160 160 THR THR B . n B 1 162 PRO 162 161 161 PRO PRO B . n B 1 163 GLN 163 162 162 GLN GLN B . n B 1 164 SER 164 163 163 SER SER B . n B 1 165 MSE 165 164 164 MSE MSE B . n B 1 166 LYS 166 165 165 LYS LYS B . n B 1 167 PHE 167 166 166 PHE PHE B . n B 1 168 PHE 168 167 167 PHE PHE B . n B 1 169 ILE 169 168 168 ILE ILE B . n B 1 170 ALA 170 169 169 ALA ALA B . n B 1 171 HIS 171 170 170 HIS HIS B . n B 1 172 SER 172 171 171 SER SER B . n B 1 173 LYS 173 172 172 LYS LYS B . n B 1 174 ILE 174 173 173 ILE ILE B . n B 1 175 ASP 175 174 174 ASP ASP B . n B 1 176 ALA 176 175 175 ALA ALA B . n B 1 177 LYS 177 176 176 LYS LYS B . n B 1 178 HIS 178 177 177 HIS HIS B . n B 1 179 ALA 179 178 178 ALA ALA B . n B 1 180 GLU 180 179 179 GLU GLU B . n B 1 181 GLU 181 180 180 GLU GLU B . n B 1 182 VAL 182 181 181 VAL VAL B . n B 1 183 ASN 183 182 182 ASN ASN B . n B 1 184 GLU 184 183 183 GLU GLU B . n B 1 185 MSE 185 184 184 MSE MSE B . n B 1 186 LEU 186 185 185 LEU LEU B . n B 1 187 HIS 187 186 186 HIS HIS B . n B 1 188 GLU 188 187 187 GLU GLU B . n B 1 189 VAL 189 188 188 VAL VAL B . n B 1 190 CYS 190 189 189 CYS CYS B . n B 1 191 LYS 191 190 190 LYS LYS B . n B 1 192 THR 192 191 191 THR THR B . n B 1 193 GLN 193 192 192 GLN GLN B . n B 1 194 GLU 194 193 193 GLU GLU B . n B 1 195 ASP 195 194 194 ASP ASP B . n B 1 196 VAL 196 195 195 VAL VAL B . n B 1 197 ASP 197 196 196 ASP ASP B . n B 1 198 SER 198 197 197 SER SER B . n B 1 199 VAL 199 198 198 VAL VAL B . n B 1 200 VAL 200 199 199 VAL VAL B . n B 1 201 ALA 201 200 200 ALA ALA B . n B 1 202 VAL 202 201 201 VAL VAL B . n B 1 203 MSE 203 202 202 MSE MSE B . n B 1 204 GLU 204 203 203 GLU GLU B . n B 1 205 ASN 205 204 204 ASN ASN B . n B 1 206 SER 206 205 205 SER SER B . n B 1 207 LEU 207 206 206 LEU LEU B . n B 1 208 VAL 208 207 207 VAL VAL B . n B 1 209 LEU 209 208 208 LEU LEU B . n B 1 210 THR 210 209 209 THR THR B . n B 1 211 ALA 211 210 210 ALA ALA B . n B 1 212 ARG 212 211 211 ARG ARG B . n B 1 213 ILE 213 212 212 ILE ILE B . n B 1 214 LEU 214 213 213 LEU LEU B . n B 1 215 ASP 215 214 214 ASP ASP B . n B 1 216 ASP 216 215 215 ASP ASP B . n B 1 217 VAL 217 216 216 VAL VAL B . n B 1 218 TRP 218 217 217 TRP TRP B . n B 1 219 LYS 219 218 218 LYS LYS B . n B 1 220 GLU 220 219 219 GLU GLU B . n B 1 221 TYR 221 220 220 TYR TYR B . n B 1 222 GLN 222 221 221 GLN GLN B . n B 1 223 LEU 223 222 222 LEU LEU B . n B 1 224 PHE 224 223 223 PHE PHE B . n B 1 225 GLN 225 224 224 GLN GLN B . n B 1 226 SER 226 225 225 SER SER B . n B 1 227 GLY 227 226 226 GLY GLY B . n B 1 228 ALA 228 227 227 ALA ALA B . n B 1 229 SER 229 228 228 SER SER B . n B 1 230 ASP 230 229 229 ASP ASP B . n B 1 231 ARG 231 230 230 ARG ARG B . n B 1 232 TYR 232 231 231 TYR TYR B . n B 1 233 ALA 233 232 232 ALA ALA B . n B 1 234 PHE 234 233 ? ? ? B . n B 1 235 LEU 235 234 ? ? ? B . n B 1 236 ARG 236 235 ? ? ? B . n B 1 237 ASP 237 236 ? ? ? B . n B 1 238 ASN 238 237 ? ? ? B . n B 1 239 ALA 239 238 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG 1 239 3 PEG PEG A . D 2 PEG 1 240 5 PEG PEG A . E 3 NO3 1 239 1 NO3 NO3 B . F 4 EDO 1 240 2 EDO EDO B . G 5 PGE 1 241 6 PGE PGE B . H 2 PEG 1 242 4 PEG PEG B . I 6 HOH 1 241 7 HOH HOH A . I 6 HOH 2 242 8 HOH HOH A . I 6 HOH 3 243 9 HOH HOH A . I 6 HOH 4 244 10 HOH HOH A . I 6 HOH 5 245 11 HOH HOH A . I 6 HOH 6 246 12 HOH HOH A . I 6 HOH 7 247 13 HOH HOH A . I 6 HOH 8 248 15 HOH HOH A . I 6 HOH 9 249 16 HOH HOH A . I 6 HOH 10 250 17 HOH HOH A . I 6 HOH 11 251 18 HOH HOH A . I 6 HOH 12 252 19 HOH HOH A . I 6 HOH 13 253 20 HOH HOH A . I 6 HOH 14 254 21 HOH HOH A . I 6 HOH 15 255 39 HOH HOH A . I 6 HOH 16 256 40 HOH HOH A . I 6 HOH 17 257 41 HOH HOH A . I 6 HOH 18 258 43 HOH HOH A . I 6 HOH 19 259 44 HOH HOH A . I 6 HOH 20 260 45 HOH HOH A . I 6 HOH 21 261 46 HOH HOH A . I 6 HOH 22 262 56 HOH HOH A . I 6 HOH 23 263 57 HOH HOH A . I 6 HOH 24 264 58 HOH HOH A . I 6 HOH 25 265 62 HOH HOH A . I 6 HOH 26 266 63 HOH HOH A . I 6 HOH 27 267 65 HOH HOH A . I 6 HOH 28 268 72 HOH HOH A . I 6 HOH 29 269 74 HOH HOH A . I 6 HOH 30 270 75 HOH HOH A . J 6 HOH 1 243 14 HOH HOH B . J 6 HOH 2 244 22 HOH HOH B . J 6 HOH 3 245 23 HOH HOH B . J 6 HOH 4 246 24 HOH HOH B . J 6 HOH 5 247 25 HOH HOH B . J 6 HOH 6 248 26 HOH HOH B . J 6 HOH 7 249 27 HOH HOH B . J 6 HOH 8 250 28 HOH HOH B . J 6 HOH 9 251 29 HOH HOH B . J 6 HOH 10 252 30 HOH HOH B . J 6 HOH 11 253 31 HOH HOH B . J 6 HOH 12 254 32 HOH HOH B . J 6 HOH 13 255 33 HOH HOH B . J 6 HOH 14 256 34 HOH HOH B . J 6 HOH 15 257 35 HOH HOH B . J 6 HOH 16 258 36 HOH HOH B . J 6 HOH 17 259 37 HOH HOH B . J 6 HOH 18 260 38 HOH HOH B . J 6 HOH 19 261 42 HOH HOH B . J 6 HOH 20 262 47 HOH HOH B . J 6 HOH 21 263 48 HOH HOH B . J 6 HOH 22 264 49 HOH HOH B . J 6 HOH 23 265 50 HOH HOH B . J 6 HOH 24 266 51 HOH HOH B . J 6 HOH 25 267 52 HOH HOH B . J 6 HOH 26 268 53 HOH HOH B . J 6 HOH 27 269 54 HOH HOH B . J 6 HOH 28 270 55 HOH HOH B . J 6 HOH 29 271 59 HOH HOH B . J 6 HOH 30 272 60 HOH HOH B . J 6 HOH 31 273 61 HOH HOH B . J 6 HOH 32 274 64 HOH HOH B . J 6 HOH 33 275 66 HOH HOH B . J 6 HOH 34 276 67 HOH HOH B . J 6 HOH 35 277 68 HOH HOH B . J 6 HOH 36 278 69 HOH HOH B . J 6 HOH 37 279 70 HOH HOH B . J 6 HOH 38 280 71 HOH HOH B . J 6 HOH 39 281 73 HOH HOH B . J 6 HOH 40 282 76 HOH HOH B . J 6 HOH 41 283 77 HOH HOH B . J 6 HOH 42 284 78 HOH HOH B . J 6 HOH 43 285 79 HOH HOH B . J 6 HOH 44 286 80 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 17 A MSE 16 ? MET SELENOMETHIONINE 2 A MSE 45 A MSE 44 ? MET SELENOMETHIONINE 3 A MSE 65 A MSE 64 ? MET SELENOMETHIONINE 4 A MSE 90 A MSE 89 ? MET SELENOMETHIONINE 5 A MSE 165 A MSE 164 ? MET SELENOMETHIONINE 6 A MSE 185 A MSE 184 ? MET SELENOMETHIONINE 7 A MSE 203 A MSE 202 ? MET SELENOMETHIONINE 8 B MSE 17 B MSE 16 ? MET SELENOMETHIONINE 9 B MSE 45 B MSE 44 ? MET SELENOMETHIONINE 10 B MSE 65 B MSE 64 ? MET SELENOMETHIONINE 11 B MSE 90 B MSE 89 ? MET SELENOMETHIONINE 12 B MSE 165 B MSE 164 ? MET SELENOMETHIONINE 13 B MSE 185 B MSE 184 ? MET SELENOMETHIONINE 14 B MSE 203 B MSE 202 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4630 ? 1 MORE -34.8 ? 1 'SSA (A^2)' 37820 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 66.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-06-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_struct_assembly_auth_evidence 2 3 'Structure model' software 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -11.4519 24.3746 -55.1856 -0.2774 0.3143 -0.1720 -0.1777 0.0076 0.1689 2.9290 2.6017 8.2529 0.2539 1.7380 0.8097 0.0797 0.0451 -0.1248 -1.0379 -0.3445 0.4534 0.1791 1.0321 -1.7508 'X-RAY DIFFRACTION' 2 ? refined -8.1745 21.0874 -93.4003 -0.0015 -0.3342 -0.2201 -0.1504 -0.1451 0.0369 2.0207 5.0676 2.2690 -0.5264 -0.4499 0.5920 0.0219 -0.0115 -0.0105 0.1188 -0.2459 0.4333 -1.0114 0.2203 -0.2351 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 3 A 234 ? A 2 A 233 'X-RAY DIFFRACTION' ? 2 2 B 3 B 233 ? B 2 B 232 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 3 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 4 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 XDS . ? ? ? ? 'data reduction' ? ? ? 6 SHELXD . ? ? ? ? phasing ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3DDE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A SER 96 ? ? OG A SER 96 ? ? 1.511 1.418 0.093 0.013 N 2 1 C A PHE 233 ? ? O A PHE 233 ? ? 1.368 1.229 0.139 0.019 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 211 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 211 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 211 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.87 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.43 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 32 ? B -121.74 -85.00 2 1 LYS A 34 ? B -178.36 114.01 3 1 ASN A 141 ? ? -104.55 41.69 4 1 ASP A 158 ? ? 38.38 60.01 5 1 MSE A 164 ? ? -144.68 32.71 6 1 SER A 225 ? ? 103.41 -69.96 7 1 ASP B 32 ? B -125.02 -122.87 8 1 LYS B 34 ? B -174.22 135.45 9 1 ASP B 158 ? ? 38.89 60.77 10 1 MSE B 164 ? ? -142.70 34.27 11 1 ILE B 168 ? ? -143.02 10.54 12 1 SER B 225 ? ? -170.33 -118.05 13 1 SER B 228 ? ? -84.60 36.72 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 8 ? CG ? A LYS 9 CG 2 1 Y 1 A LYS 8 ? CD ? A LYS 9 CD 3 1 Y 1 A LYS 8 ? CE ? A LYS 9 CE 4 1 Y 1 A LYS 8 ? NZ ? A LYS 9 NZ 5 1 Y 1 A GLU 10 ? CD ? A GLU 11 CD 6 1 Y 1 A GLU 10 ? OE1 ? A GLU 11 OE1 7 1 Y 1 A GLU 10 ? OE2 ? A GLU 11 OE2 8 1 Y 1 A GLN 11 ? CG ? A GLN 12 CG 9 1 Y 1 A GLN 11 ? CD ? A GLN 12 CD 10 1 Y 1 A GLN 11 ? OE1 ? A GLN 12 OE1 11 1 Y 1 A GLN 11 ? NE2 ? A GLN 12 NE2 12 1 Y 1 A LYS 34 ? CG ? A LYS 35 CG 13 1 Y 1 A LYS 34 ? CD ? A LYS 35 CD 14 1 Y 1 A LYS 34 ? CE ? A LYS 35 CE 15 1 Y 1 A LYS 34 ? NZ ? A LYS 35 NZ 16 1 Y 1 A LYS 37 ? CG ? A LYS 38 CG 17 1 Y 1 A LYS 37 ? CD ? A LYS 38 CD 18 1 Y 1 A LYS 37 ? CE ? A LYS 38 CE 19 1 Y 1 A LYS 37 ? NZ ? A LYS 38 NZ 20 1 Y 1 A LYS 66 ? CD ? A LYS 67 CD 21 1 Y 1 A LYS 66 ? CE ? A LYS 67 CE 22 1 Y 1 A LYS 66 ? NZ ? A LYS 67 NZ 23 1 Y 1 A LYS 71 ? CD ? A LYS 72 CD 24 1 Y 1 A LYS 71 ? CE ? A LYS 72 CE 25 1 Y 1 A LYS 71 ? NZ ? A LYS 72 NZ 26 1 Y 1 A LYS 108 ? CD ? A LYS 109 CD 27 1 Y 1 A LYS 108 ? CE ? A LYS 109 CE 28 1 Y 1 A LYS 108 ? NZ ? A LYS 109 NZ 29 1 Y 1 A ASN 141 ? CG ? A ASN 142 CG 30 1 Y 1 A ASN 141 ? OD1 ? A ASN 142 OD1 31 1 Y 1 A ASN 141 ? ND2 ? A ASN 142 ND2 32 1 Y 1 A TYR 143 ? CD1 ? A TYR 144 CD1 33 1 Y 1 A TYR 143 ? CD2 ? A TYR 144 CD2 34 1 Y 1 A TYR 143 ? CE1 ? A TYR 144 CE1 35 1 Y 1 A TYR 143 ? CE2 ? A TYR 144 CE2 36 1 Y 1 A TYR 143 ? CZ ? A TYR 144 CZ 37 1 Y 1 A TYR 143 ? OH ? A TYR 144 OH 38 1 Y 1 A LYS 151 ? CD ? A LYS 152 CD 39 1 Y 1 A LYS 151 ? CE ? A LYS 152 CE 40 1 Y 1 A LYS 151 ? NZ ? A LYS 152 NZ 41 1 Y 1 A LYS 165 ? CG ? A LYS 166 CG 42 1 Y 1 A LYS 165 ? CD ? A LYS 166 CD 43 1 Y 1 A LYS 165 ? CE ? A LYS 166 CE 44 1 Y 1 A LYS 165 ? NZ ? A LYS 166 NZ 45 1 Y 1 A LYS 172 ? CG ? A LYS 173 CG 46 1 Y 1 A LYS 172 ? CD ? A LYS 173 CD 47 1 Y 1 A LYS 172 ? CE ? A LYS 173 CE 48 1 Y 1 A LYS 172 ? NZ ? A LYS 173 NZ 49 1 Y 1 A ASP 174 ? CG ? A ASP 175 CG 50 1 Y 1 A ASP 174 ? OD1 ? A ASP 175 OD1 51 1 Y 1 A ASP 174 ? OD2 ? A ASP 175 OD2 52 1 Y 1 A LYS 176 ? CE ? A LYS 177 CE 53 1 Y 1 A LYS 176 ? NZ ? A LYS 177 NZ 54 1 Y 1 A GLU 179 ? CG ? A GLU 180 CG 55 1 Y 1 A GLU 179 ? CD ? A GLU 180 CD 56 1 Y 1 A GLU 179 ? OE1 ? A GLU 180 OE1 57 1 Y 1 A GLU 179 ? OE2 ? A GLU 180 OE2 58 1 Y 1 A GLU 183 ? CG ? A GLU 184 CG 59 1 Y 1 A GLU 183 ? CD ? A GLU 184 CD 60 1 Y 1 A GLU 183 ? OE1 ? A GLU 184 OE1 61 1 Y 1 A GLU 183 ? OE2 ? A GLU 184 OE2 62 1 Y 1 A GLU 193 ? CD ? A GLU 194 CD 63 1 Y 1 A GLU 193 ? OE1 ? A GLU 194 OE1 64 1 Y 1 A GLU 193 ? OE2 ? A GLU 194 OE2 65 1 Y 1 A LYS 218 ? CD ? A LYS 219 CD 66 1 Y 1 A LYS 218 ? CE ? A LYS 219 CE 67 1 Y 1 A LYS 218 ? NZ ? A LYS 219 NZ 68 1 Y 1 B LYS 8 ? CG ? B LYS 9 CG 69 1 Y 1 B LYS 8 ? CD ? B LYS 9 CD 70 1 Y 1 B LYS 8 ? CE ? B LYS 9 CE 71 1 Y 1 B LYS 8 ? NZ ? B LYS 9 NZ 72 1 Y 1 B GLN 11 ? CG ? B GLN 12 CG 73 1 Y 1 B GLN 11 ? CD ? B GLN 12 CD 74 1 Y 1 B GLN 11 ? OE1 ? B GLN 12 OE1 75 1 Y 1 B GLN 11 ? NE2 ? B GLN 12 NE2 76 1 Y 1 B LYS 34 ? CG ? B LYS 35 CG 77 1 Y 1 B LYS 34 ? CD ? B LYS 35 CD 78 1 Y 1 B LYS 34 ? CE ? B LYS 35 CE 79 1 Y 1 B LYS 34 ? NZ ? B LYS 35 NZ 80 1 Y 1 B LYS 37 ? CD ? B LYS 38 CD 81 1 Y 1 B LYS 37 ? CE ? B LYS 38 CE 82 1 Y 1 B LYS 37 ? NZ ? B LYS 38 NZ 83 1 Y 1 B LYS 66 ? CG ? B LYS 67 CG 84 1 Y 1 B LYS 66 ? CD ? B LYS 67 CD 85 1 Y 1 B LYS 66 ? CE ? B LYS 67 CE 86 1 Y 1 B LYS 66 ? NZ ? B LYS 67 NZ 87 1 Y 1 B LYS 71 ? CG ? B LYS 72 CG 88 1 Y 1 B LYS 71 ? CD ? B LYS 72 CD 89 1 Y 1 B LYS 71 ? CE ? B LYS 72 CE 90 1 Y 1 B LYS 71 ? NZ ? B LYS 72 NZ 91 1 Y 1 B LYS 108 ? CD ? B LYS 109 CD 92 1 Y 1 B LYS 108 ? CE ? B LYS 109 CE 93 1 Y 1 B LYS 108 ? NZ ? B LYS 109 NZ 94 1 Y 1 B ASN 141 ? OD1 ? B ASN 142 OD1 95 1 Y 1 B ASN 141 ? ND2 ? B ASN 142 ND2 96 1 Y 1 B LYS 151 ? CD ? B LYS 152 CD 97 1 Y 1 B LYS 151 ? CE ? B LYS 152 CE 98 1 Y 1 B LYS 151 ? NZ ? B LYS 152 NZ 99 1 Y 1 B LYS 165 ? CE ? B LYS 166 CE 100 1 Y 1 B LYS 165 ? NZ ? B LYS 166 NZ 101 1 Y 1 B HIS 170 ? ND1 ? B HIS 171 ND1 102 1 Y 1 B HIS 170 ? CD2 ? B HIS 171 CD2 103 1 Y 1 B HIS 170 ? CE1 ? B HIS 171 CE1 104 1 Y 1 B HIS 170 ? NE2 ? B HIS 171 NE2 105 1 Y 1 B LYS 172 ? CG ? B LYS 173 CG 106 1 Y 1 B LYS 172 ? CD ? B LYS 173 CD 107 1 Y 1 B LYS 172 ? CE ? B LYS 173 CE 108 1 Y 1 B LYS 172 ? NZ ? B LYS 173 NZ 109 1 Y 1 B ASP 174 ? CG ? B ASP 175 CG 110 1 Y 1 B ASP 174 ? OD1 ? B ASP 175 OD1 111 1 Y 1 B ASP 174 ? OD2 ? B ASP 175 OD2 112 1 Y 1 B LYS 176 ? CE ? B LYS 177 CE 113 1 Y 1 B LYS 176 ? NZ ? B LYS 177 NZ 114 1 Y 1 B GLU 179 ? CG ? B GLU 180 CG 115 1 Y 1 B GLU 179 ? CD ? B GLU 180 CD 116 1 Y 1 B GLU 179 ? OE1 ? B GLU 180 OE1 117 1 Y 1 B GLU 179 ? OE2 ? B GLU 180 OE2 118 1 Y 1 B GLU 183 ? CG ? B GLU 184 CG 119 1 Y 1 B GLU 183 ? CD ? B GLU 184 CD 120 1 Y 1 B GLU 183 ? OE1 ? B GLU 184 OE1 121 1 Y 1 B GLU 183 ? OE2 ? B GLU 184 OE2 122 1 Y 1 B GLU 193 ? CD ? B GLU 194 CD 123 1 Y 1 B GLU 193 ? OE1 ? B GLU 194 OE1 124 1 Y 1 B GLU 193 ? OE2 ? B GLU 194 OE2 125 1 Y 1 B LYS 218 ? CG ? B LYS 219 CG 126 1 Y 1 B LYS 218 ? CD ? B LYS 219 CD 127 1 Y 1 B LYS 218 ? CE ? B LYS 219 CE 128 1 Y 1 B LYS 218 ? NZ ? B LYS 219 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A LEU 234 ? A LEU 235 4 1 Y 1 A ARG 235 ? A ARG 236 5 1 Y 1 A ASP 236 ? A ASP 237 6 1 Y 1 A ASN 237 ? A ASN 238 7 1 Y 1 A ALA 238 ? A ALA 239 8 1 Y 1 B GLY 0 ? B GLY 1 9 1 Y 1 B MSE 1 ? B MSE 2 10 1 Y 1 B PHE 233 ? B PHE 234 11 1 Y 1 B LEU 234 ? B LEU 235 12 1 Y 1 B ARG 235 ? B ARG 236 13 1 Y 1 B ASP 236 ? B ASP 237 14 1 Y 1 B ASN 237 ? B ASN 238 15 1 Y 1 B ALA 238 ? B ALA 239 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 'NITRATE ION' NO3 4 1,2-ETHANEDIOL EDO 5 'TRIETHYLENE GLYCOL' PGE 6 water HOH # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? #