data_3DDI # _entry.id 3DDI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DDI pdb_00003ddi 10.2210/pdb3ddi/pdb RCSB RCSB047902 ? ? WWPDB D_1000047902 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-06-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_struct_conn_angle 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.value' 6 3 'Structure model' '_struct_conn.pdbx_dist_value' 7 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 8 3 'Structure model' '_struct_ref_seq_dif.details' 9 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DDI _pdbx_database_status.recvd_initial_deposition_date 2008-06-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2b8p 'crystal structure of mimivirus NDK' unspecified PDB 2b8q 'crystal structure of mimivirus NDK complexed with TDP' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jeudy, S.' 1 'Lartigue, A.' 2 'Claverie, J.M.' 3 'Abergel, A.' 4 # _citation.id primary _citation.title 'Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.' _citation.journal_abbrev J.Virol. _citation.journal_volume 83 _citation.page_first 7142 _citation.page_last 7150 _citation.year 2009 _citation.journal_id_ASTM JOVIAM _citation.country US _citation.journal_id_ISSN 0022-538X _citation.journal_id_CSD 0825 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19439473 _citation.pdbx_database_id_DOI 10.1128/JVI.00511-09 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeudy, S.' 1 ? primary 'Lartigue, A.' 2 ? primary 'Claverie, J.M.' 3 ? primary 'Abergel, C.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Nucleoside diphosphate kinase' 16527.703 2 2.7.4.6 'N62L, R107G' ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn "THYMIDINE-5'-DIPHOSPHATE" 402.188 2 ? ? ? ? 4 water nat water 18.015 167 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'NDK, NDP kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIV YEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDSEDSAVDEISIWFPETKMETDN ; _entity_poly.pdbx_seq_one_letter_code_can ;YKKAGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDLCDFMVSGPIISIV YEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDSEDSAVDEISIWFPETKMETDN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "THYMIDINE-5'-DIPHOSPHATE" TYD 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 LYS n 1 3 LYS n 1 4 ALA n 1 5 GLY n 1 6 LEU n 1 7 GLN n 1 8 ARG n 1 9 THR n 1 10 LEU n 1 11 VAL n 1 12 LEU n 1 13 ILE n 1 14 LYS n 1 15 PRO n 1 16 ASP n 1 17 ALA n 1 18 PHE n 1 19 GLU n 1 20 ARG n 1 21 SER n 1 22 LEU n 1 23 VAL n 1 24 ALA n 1 25 GLU n 1 26 ILE n 1 27 MET n 1 28 GLY n 1 29 ARG n 1 30 ILE n 1 31 GLU n 1 32 LYS n 1 33 LYS n 1 34 ASN n 1 35 PHE n 1 36 LYS n 1 37 ILE n 1 38 VAL n 1 39 SER n 1 40 MET n 1 41 LYS n 1 42 PHE n 1 43 TRP n 1 44 SER n 1 45 LYS n 1 46 ALA n 1 47 PRO n 1 48 ARG n 1 49 ASN n 1 50 LEU n 1 51 ILE n 1 52 GLU n 1 53 GLN n 1 54 HIS n 1 55 TYR n 1 56 LYS n 1 57 GLU n 1 58 HIS n 1 59 SER n 1 60 GLU n 1 61 GLN n 1 62 SER n 1 63 TYR n 1 64 PHE n 1 65 ASN n 1 66 ASP n 1 67 LEU n 1 68 CYS n 1 69 ASP n 1 70 PHE n 1 71 MET n 1 72 VAL n 1 73 SER n 1 74 GLY n 1 75 PRO n 1 76 ILE n 1 77 ILE n 1 78 SER n 1 79 ILE n 1 80 VAL n 1 81 TYR n 1 82 GLU n 1 83 GLY n 1 84 THR n 1 85 ASP n 1 86 ALA n 1 87 ILE n 1 88 SER n 1 89 LYS n 1 90 ILE n 1 91 ARG n 1 92 ARG n 1 93 LEU n 1 94 GLN n 1 95 GLY n 1 96 ASN n 1 97 THR n 1 98 ASN n 1 99 PRO n 1 100 LEU n 1 101 ALA n 1 102 SER n 1 103 ALA n 1 104 PRO n 1 105 GLY n 1 106 THR n 1 107 ILE n 1 108 ARG n 1 109 GLY n 1 110 ASP n 1 111 LEU n 1 112 ALA n 1 113 ASN n 1 114 ASP n 1 115 ILE n 1 116 GLY n 1 117 GLU n 1 118 ASN n 1 119 LEU n 1 120 ILE n 1 121 HIS n 1 122 ALA n 1 123 SER n 1 124 ASP n 1 125 SER n 1 126 GLU n 1 127 ASP n 1 128 SER n 1 129 ALA n 1 130 VAL n 1 131 ASP n 1 132 GLU n 1 133 ILE n 1 134 SER n 1 135 ILE n 1 136 TRP n 1 137 PHE n 1 138 PRO n 1 139 GLU n 1 140 THR n 1 141 LYS n 1 142 MET n 1 143 GLU n 1 144 THR n 1 145 ASP n 1 146 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name APMV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NDK, MIMI_R418' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acanthamoeba polyphaga mimivirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 212035 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pDIGS02 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYD non-polymer . "THYMIDINE-5'-DIPHOSPHATE" ? 'C10 H16 N2 O11 P2' 402.188 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 -4 ? ? ? A . n A 1 2 LYS 2 -3 ? ? ? A . n A 1 3 LYS 3 -2 ? ? ? A . n A 1 4 ALA 4 -1 ? ? ? A . n A 1 5 GLY 5 0 ? ? ? A . n A 1 6 LEU 6 1 1 LEU LEU A . n A 1 7 GLN 7 2 2 GLN GLN A . n A 1 8 ARG 8 3 3 ARG ARG A . n A 1 9 THR 9 4 4 THR THR A . n A 1 10 LEU 10 5 5 LEU LEU A . n A 1 11 VAL 11 6 6 VAL VAL A . n A 1 12 LEU 12 7 7 LEU LEU A . n A 1 13 ILE 13 8 8 ILE ILE A . n A 1 14 LYS 14 9 9 LYS LYS A . n A 1 15 PRO 15 10 10 PRO PRO A . n A 1 16 ASP 16 11 11 ASP ASP A . n A 1 17 ALA 17 12 12 ALA ALA A . n A 1 18 PHE 18 13 13 PHE PHE A . n A 1 19 GLU 19 14 14 GLU GLU A . n A 1 20 ARG 20 15 15 ARG ARG A . n A 1 21 SER 21 16 16 SER SER A . n A 1 22 LEU 22 17 17 LEU LEU A . n A 1 23 VAL 23 18 18 VAL VAL A . n A 1 24 ALA 24 19 19 ALA ALA A . n A 1 25 GLU 25 20 20 GLU GLU A . n A 1 26 ILE 26 21 21 ILE ILE A . n A 1 27 MET 27 22 22 MET MET A . n A 1 28 GLY 28 23 23 GLY GLY A . n A 1 29 ARG 29 24 24 ARG ARG A . n A 1 30 ILE 30 25 25 ILE ILE A . n A 1 31 GLU 31 26 26 GLU GLU A . n A 1 32 LYS 32 27 27 LYS LYS A . n A 1 33 LYS 33 28 28 LYS LYS A . n A 1 34 ASN 34 29 29 ASN ASN A . n A 1 35 PHE 35 30 30 PHE PHE A . n A 1 36 LYS 36 31 31 LYS LYS A . n A 1 37 ILE 37 32 32 ILE ILE A . n A 1 38 VAL 38 33 33 VAL VAL A . n A 1 39 SER 39 34 34 SER SER A . n A 1 40 MET 40 35 35 MET MET A . n A 1 41 LYS 41 36 36 LYS LYS A . n A 1 42 PHE 42 37 37 PHE PHE A . n A 1 43 TRP 43 38 38 TRP TRP A . n A 1 44 SER 44 39 39 SER SER A . n A 1 45 LYS 45 40 40 LYS LYS A . n A 1 46 ALA 46 41 41 ALA ALA A . n A 1 47 PRO 47 42 42 PRO PRO A . n A 1 48 ARG 48 43 43 ARG ARG A . n A 1 49 ASN 49 44 44 ASN ASN A . n A 1 50 LEU 50 45 45 LEU LEU A . n A 1 51 ILE 51 46 46 ILE ILE A . n A 1 52 GLU 52 47 47 GLU GLU A . n A 1 53 GLN 53 48 48 GLN GLN A . n A 1 54 HIS 54 49 49 HIS HIS A . n A 1 55 TYR 55 50 50 TYR TYR A . n A 1 56 LYS 56 51 51 LYS LYS A . n A 1 57 GLU 57 52 52 GLU GLU A . n A 1 58 HIS 58 53 53 HIS HIS A . n A 1 59 SER 59 54 54 SER SER A . n A 1 60 GLU 60 55 55 GLU GLU A . n A 1 61 GLN 61 56 56 GLN GLN A . n A 1 62 SER 62 57 57 SER SER A . n A 1 63 TYR 63 58 58 TYR TYR A . n A 1 64 PHE 64 59 59 PHE PHE A . n A 1 65 ASN 65 60 60 ASN ASN A . n A 1 66 ASP 66 61 61 ASP ASP A . n A 1 67 LEU 67 62 62 LEU LEU A . n A 1 68 CYS 68 63 63 CYS CYS A . n A 1 69 ASP 69 64 64 ASP ASP A . n A 1 70 PHE 70 65 65 PHE PHE A . n A 1 71 MET 71 66 66 MET MET A . n A 1 72 VAL 72 67 67 VAL VAL A . n A 1 73 SER 73 68 68 SER SER A . n A 1 74 GLY 74 69 69 GLY GLY A . n A 1 75 PRO 75 70 70 PRO PRO A . n A 1 76 ILE 76 71 71 ILE ILE A . n A 1 77 ILE 77 72 72 ILE ILE A . n A 1 78 SER 78 73 73 SER SER A . n A 1 79 ILE 79 74 74 ILE ILE A . n A 1 80 VAL 80 75 75 VAL VAL A . n A 1 81 TYR 81 76 76 TYR TYR A . n A 1 82 GLU 82 77 77 GLU GLU A . n A 1 83 GLY 83 78 78 GLY GLY A . n A 1 84 THR 84 79 79 THR THR A . n A 1 85 ASP 85 80 80 ASP ASP A . n A 1 86 ALA 86 81 81 ALA ALA A . n A 1 87 ILE 87 82 82 ILE ILE A . n A 1 88 SER 88 83 83 SER SER A . n A 1 89 LYS 89 84 84 LYS LYS A . n A 1 90 ILE 90 85 85 ILE ILE A . n A 1 91 ARG 91 86 86 ARG ARG A . n A 1 92 ARG 92 87 87 ARG ARG A . n A 1 93 LEU 93 88 88 LEU LEU A . n A 1 94 GLN 94 89 89 GLN GLN A . n A 1 95 GLY 95 90 90 GLY GLY A . n A 1 96 ASN 96 91 91 ASN ASN A . n A 1 97 THR 97 92 92 THR THR A . n A 1 98 ASN 98 93 93 ASN ASN A . n A 1 99 PRO 99 94 94 PRO PRO A . n A 1 100 LEU 100 95 95 LEU LEU A . n A 1 101 ALA 101 96 96 ALA ALA A . n A 1 102 SER 102 97 97 SER SER A . n A 1 103 ALA 103 98 98 ALA ALA A . n A 1 104 PRO 104 99 99 PRO PRO A . n A 1 105 GLY 105 100 100 GLY GLY A . n A 1 106 THR 106 101 101 THR THR A . n A 1 107 ILE 107 102 102 ILE ILE A . n A 1 108 ARG 108 103 103 ARG ARG A . n A 1 109 GLY 109 104 104 GLY GLY A . n A 1 110 ASP 110 105 105 ASP ASP A . n A 1 111 LEU 111 106 106 LEU LEU A . n A 1 112 ALA 112 107 107 ALA ALA A . n A 1 113 ASN 113 108 108 ASN ASN A . n A 1 114 ASP 114 109 109 ASP ASP A . n A 1 115 ILE 115 110 110 ILE ILE A . n A 1 116 GLY 116 111 111 GLY GLY A . n A 1 117 GLU 117 112 112 GLU GLU A . n A 1 118 ASN 118 113 113 ASN ASN A . n A 1 119 LEU 119 114 114 LEU LEU A . n A 1 120 ILE 120 115 115 ILE ILE A . n A 1 121 HIS 121 116 116 HIS HIS A . n A 1 122 ALA 122 117 117 ALA ALA A . n A 1 123 SER 123 118 118 SER SER A . n A 1 124 ASP 124 119 119 ASP ASP A . n A 1 125 SER 125 120 120 SER SER A . n A 1 126 GLU 126 121 121 GLU GLU A . n A 1 127 ASP 127 122 122 ASP ASP A . n A 1 128 SER 128 123 123 SER SER A . n A 1 129 ALA 129 124 124 ALA ALA A . n A 1 130 VAL 130 125 125 VAL VAL A . n A 1 131 ASP 131 126 126 ASP ASP A . n A 1 132 GLU 132 127 127 GLU GLU A . n A 1 133 ILE 133 128 128 ILE ILE A . n A 1 134 SER 134 129 129 SER SER A . n A 1 135 ILE 135 130 130 ILE ILE A . n A 1 136 TRP 136 131 131 TRP TRP A . n A 1 137 PHE 137 132 132 PHE PHE A . n A 1 138 PRO 138 133 133 PRO PRO A . n A 1 139 GLU 139 134 ? ? ? A . n A 1 140 THR 140 135 ? ? ? A . n A 1 141 LYS 141 136 ? ? ? A . n A 1 142 MET 142 137 ? ? ? A . n A 1 143 GLU 143 138 ? ? ? A . n A 1 144 THR 144 139 ? ? ? A . n A 1 145 ASP 145 140 ? ? ? A . n A 1 146 ASN 146 141 ? ? ? A . n B 1 1 TYR 1 -4 ? ? ? B . n B 1 2 LYS 2 -3 ? ? ? B . n B 1 3 LYS 3 -2 ? ? ? B . n B 1 4 ALA 4 -1 ? ? ? B . n B 1 5 GLY 5 0 ? ? ? B . n B 1 6 LEU 6 1 1 LEU LEU B . n B 1 7 GLN 7 2 2 GLN GLN B . n B 1 8 ARG 8 3 3 ARG ARG B . n B 1 9 THR 9 4 4 THR THR B . n B 1 10 LEU 10 5 5 LEU LEU B . n B 1 11 VAL 11 6 6 VAL VAL B . n B 1 12 LEU 12 7 7 LEU LEU B . n B 1 13 ILE 13 8 8 ILE ILE B . n B 1 14 LYS 14 9 9 LYS LYS B . n B 1 15 PRO 15 10 10 PRO PRO B . n B 1 16 ASP 16 11 11 ASP ASP B . n B 1 17 ALA 17 12 12 ALA ALA B . n B 1 18 PHE 18 13 13 PHE PHE B . n B 1 19 GLU 19 14 14 GLU GLU B . n B 1 20 ARG 20 15 15 ARG ARG B . n B 1 21 SER 21 16 16 SER SER B . n B 1 22 LEU 22 17 17 LEU LEU B . n B 1 23 VAL 23 18 18 VAL VAL B . n B 1 24 ALA 24 19 19 ALA ALA B . n B 1 25 GLU 25 20 20 GLU GLU B . n B 1 26 ILE 26 21 21 ILE ILE B . n B 1 27 MET 27 22 22 MET MET B . n B 1 28 GLY 28 23 23 GLY GLY B . n B 1 29 ARG 29 24 24 ARG ARG B . n B 1 30 ILE 30 25 25 ILE ILE B . n B 1 31 GLU 31 26 26 GLU GLU B . n B 1 32 LYS 32 27 27 LYS LYS B . n B 1 33 LYS 33 28 28 LYS LYS B . n B 1 34 ASN 34 29 29 ASN ASN B . n B 1 35 PHE 35 30 30 PHE PHE B . n B 1 36 LYS 36 31 31 LYS LYS B . n B 1 37 ILE 37 32 32 ILE ILE B . n B 1 38 VAL 38 33 33 VAL VAL B . n B 1 39 SER 39 34 34 SER SER B . n B 1 40 MET 40 35 35 MET MET B . n B 1 41 LYS 41 36 36 LYS LYS B . n B 1 42 PHE 42 37 37 PHE PHE B . n B 1 43 TRP 43 38 38 TRP TRP B . n B 1 44 SER 44 39 39 SER SER B . n B 1 45 LYS 45 40 40 LYS LYS B . n B 1 46 ALA 46 41 41 ALA ALA B . n B 1 47 PRO 47 42 42 PRO PRO B . n B 1 48 ARG 48 43 43 ARG ARG B . n B 1 49 ASN 49 44 44 ASN ASN B . n B 1 50 LEU 50 45 45 LEU LEU B . n B 1 51 ILE 51 46 46 ILE ILE B . n B 1 52 GLU 52 47 47 GLU GLU B . n B 1 53 GLN 53 48 48 GLN GLN B . n B 1 54 HIS 54 49 49 HIS HIS B . n B 1 55 TYR 55 50 50 TYR TYR B . n B 1 56 LYS 56 51 51 LYS LYS B . n B 1 57 GLU 57 52 52 GLU GLU B . n B 1 58 HIS 58 53 53 HIS HIS B . n B 1 59 SER 59 54 54 SER SER B . n B 1 60 GLU 60 55 55 GLU GLU B . n B 1 61 GLN 61 56 56 GLN GLN B . n B 1 62 SER 62 57 57 SER SER B . n B 1 63 TYR 63 58 58 TYR TYR B . n B 1 64 PHE 64 59 59 PHE PHE B . n B 1 65 ASN 65 60 60 ASN ASN B . n B 1 66 ASP 66 61 61 ASP ASP B . n B 1 67 LEU 67 62 62 LEU LEU B . n B 1 68 CYS 68 63 63 CYS CYS B . n B 1 69 ASP 69 64 64 ASP ASP B . n B 1 70 PHE 70 65 65 PHE PHE B . n B 1 71 MET 71 66 66 MET MET B . n B 1 72 VAL 72 67 67 VAL VAL B . n B 1 73 SER 73 68 68 SER SER B . n B 1 74 GLY 74 69 69 GLY GLY B . n B 1 75 PRO 75 70 70 PRO PRO B . n B 1 76 ILE 76 71 71 ILE ILE B . n B 1 77 ILE 77 72 72 ILE ILE B . n B 1 78 SER 78 73 73 SER SER B . n B 1 79 ILE 79 74 74 ILE ILE B . n B 1 80 VAL 80 75 75 VAL VAL B . n B 1 81 TYR 81 76 76 TYR TYR B . n B 1 82 GLU 82 77 77 GLU GLU B . n B 1 83 GLY 83 78 78 GLY GLY B . n B 1 84 THR 84 79 79 THR THR B . n B 1 85 ASP 85 80 80 ASP ASP B . n B 1 86 ALA 86 81 81 ALA ALA B . n B 1 87 ILE 87 82 82 ILE ILE B . n B 1 88 SER 88 83 83 SER SER B . n B 1 89 LYS 89 84 84 LYS LYS B . n B 1 90 ILE 90 85 85 ILE ILE B . n B 1 91 ARG 91 86 86 ARG ARG B . n B 1 92 ARG 92 87 87 ARG ARG B . n B 1 93 LEU 93 88 88 LEU LEU B . n B 1 94 GLN 94 89 89 GLN GLN B . n B 1 95 GLY 95 90 90 GLY GLY B . n B 1 96 ASN 96 91 91 ASN ASN B . n B 1 97 THR 97 92 92 THR THR B . n B 1 98 ASN 98 93 93 ASN ASN B . n B 1 99 PRO 99 94 94 PRO PRO B . n B 1 100 LEU 100 95 95 LEU LEU B . n B 1 101 ALA 101 96 96 ALA ALA B . n B 1 102 SER 102 97 97 SER SER B . n B 1 103 ALA 103 98 98 ALA ALA B . n B 1 104 PRO 104 99 99 PRO PRO B . n B 1 105 GLY 105 100 100 GLY GLY B . n B 1 106 THR 106 101 101 THR THR B . n B 1 107 ILE 107 102 102 ILE ILE B . n B 1 108 ARG 108 103 103 ARG ARG B . n B 1 109 GLY 109 104 104 GLY GLY B . n B 1 110 ASP 110 105 105 ASP ASP B . n B 1 111 LEU 111 106 106 LEU LEU B . n B 1 112 ALA 112 107 107 ALA ALA B . n B 1 113 ASN 113 108 108 ASN ASN B . n B 1 114 ASP 114 109 109 ASP ASP B . n B 1 115 ILE 115 110 110 ILE ILE B . n B 1 116 GLY 116 111 111 GLY GLY B . n B 1 117 GLU 117 112 112 GLU GLU B . n B 1 118 ASN 118 113 113 ASN ASN B . n B 1 119 LEU 119 114 114 LEU LEU B . n B 1 120 ILE 120 115 115 ILE ILE B . n B 1 121 HIS 121 116 116 HIS HIS B . n B 1 122 ALA 122 117 117 ALA ALA B . n B 1 123 SER 123 118 118 SER SER B . n B 1 124 ASP 124 119 119 ASP ASP B . n B 1 125 SER 125 120 120 SER SER B . n B 1 126 GLU 126 121 121 GLU GLU B . n B 1 127 ASP 127 122 122 ASP ASP B . n B 1 128 SER 128 123 123 SER SER B . n B 1 129 ALA 129 124 124 ALA ALA B . n B 1 130 VAL 130 125 125 VAL VAL B . n B 1 131 ASP 131 126 126 ASP ASP B . n B 1 132 GLU 132 127 127 GLU GLU B . n B 1 133 ILE 133 128 128 ILE ILE B . n B 1 134 SER 134 129 129 SER SER B . n B 1 135 ILE 135 130 130 ILE ILE B . n B 1 136 TRP 136 131 131 TRP TRP B . n B 1 137 PHE 137 132 132 PHE PHE B . n B 1 138 PRO 138 133 133 PRO PRO B . n B 1 139 GLU 139 134 ? ? ? B . n B 1 140 THR 140 135 ? ? ? B . n B 1 141 LYS 141 136 ? ? ? B . n B 1 142 MET 142 137 ? ? ? B . n B 1 143 GLU 143 138 ? ? ? B . n B 1 144 THR 144 139 ? ? ? B . n B 1 145 ASP 145 140 ? ? ? B . n B 1 146 ASN 146 141 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 142 1 MG MG A . D 3 TYD 1 201 201 TYD TYD A . E 2 MG 1 142 1 MG MG B . F 3 TYD 1 201 201 TYD TYD B . G 4 HOH 1 202 2 HOH HOH A . G 4 HOH 2 203 3 HOH HOH A . G 4 HOH 3 204 4 HOH HOH A . G 4 HOH 4 205 6 HOH HOH A . G 4 HOH 5 206 7 HOH HOH A . G 4 HOH 6 207 8 HOH HOH A . G 4 HOH 7 208 10 HOH HOH A . G 4 HOH 8 209 12 HOH HOH A . G 4 HOH 9 210 13 HOH HOH A . G 4 HOH 10 211 15 HOH HOH A . G 4 HOH 11 212 16 HOH HOH A . G 4 HOH 12 213 19 HOH HOH A . G 4 HOH 13 214 20 HOH HOH A . G 4 HOH 14 215 21 HOH HOH A . G 4 HOH 15 216 22 HOH HOH A . G 4 HOH 16 217 23 HOH HOH A . G 4 HOH 17 218 24 HOH HOH A . G 4 HOH 18 219 27 HOH HOH A . G 4 HOH 19 220 28 HOH HOH A . G 4 HOH 20 221 33 HOH HOH A . G 4 HOH 21 222 34 HOH HOH A . G 4 HOH 22 223 39 HOH HOH A . G 4 HOH 23 224 44 HOH HOH A . G 4 HOH 24 225 45 HOH HOH A . G 4 HOH 25 226 50 HOH HOH A . G 4 HOH 26 227 51 HOH HOH A . G 4 HOH 27 228 53 HOH HOH A . G 4 HOH 28 229 54 HOH HOH A . G 4 HOH 29 230 57 HOH HOH A . G 4 HOH 30 231 58 HOH HOH A . G 4 HOH 31 232 61 HOH HOH A . G 4 HOH 32 233 65 HOH HOH A . G 4 HOH 33 234 66 HOH HOH A . G 4 HOH 34 235 68 HOH HOH A . G 4 HOH 35 236 69 HOH HOH A . G 4 HOH 36 237 70 HOH HOH A . G 4 HOH 37 238 73 HOH HOH A . G 4 HOH 38 239 74 HOH HOH A . G 4 HOH 39 240 76 HOH HOH A . G 4 HOH 40 241 77 HOH HOH A . G 4 HOH 41 242 78 HOH HOH A . G 4 HOH 42 243 80 HOH HOH A . G 4 HOH 43 244 81 HOH HOH A . G 4 HOH 44 245 84 HOH HOH A . G 4 HOH 45 246 87 HOH HOH A . G 4 HOH 46 247 91 HOH HOH A . G 4 HOH 47 248 94 HOH HOH A . G 4 HOH 48 249 95 HOH HOH A . G 4 HOH 49 250 97 HOH HOH A . G 4 HOH 50 251 99 HOH HOH A . G 4 HOH 51 252 100 HOH HOH A . G 4 HOH 52 253 101 HOH HOH A . G 4 HOH 53 254 102 HOH HOH A . G 4 HOH 54 255 108 HOH HOH A . G 4 HOH 55 256 111 HOH HOH A . G 4 HOH 56 257 112 HOH HOH A . G 4 HOH 57 258 113 HOH HOH A . G 4 HOH 58 259 117 HOH HOH A . G 4 HOH 59 260 119 HOH HOH A . G 4 HOH 60 261 120 HOH HOH A . G 4 HOH 61 262 121 HOH HOH A . G 4 HOH 62 263 122 HOH HOH A . G 4 HOH 63 264 124 HOH HOH A . G 4 HOH 64 265 129 HOH HOH A . G 4 HOH 65 266 130 HOH HOH A . G 4 HOH 66 267 131 HOH HOH A . G 4 HOH 67 268 132 HOH HOH A . G 4 HOH 68 269 137 HOH HOH A . G 4 HOH 69 270 139 HOH HOH A . G 4 HOH 70 271 140 HOH HOH A . G 4 HOH 71 272 142 HOH HOH A . G 4 HOH 72 273 144 HOH HOH A . G 4 HOH 73 274 145 HOH HOH A . G 4 HOH 74 275 150 HOH HOH A . G 4 HOH 75 276 151 HOH HOH A . G 4 HOH 76 277 153 HOH HOH A . G 4 HOH 77 278 154 HOH HOH A . G 4 HOH 78 279 156 HOH HOH A . G 4 HOH 79 280 158 HOH HOH A . G 4 HOH 80 281 159 HOH HOH A . G 4 HOH 81 282 42 HOH HOH A . G 4 HOH 82 283 160 HOH HOH A . H 4 HOH 1 202 1 HOH HOH B . H 4 HOH 2 203 5 HOH HOH B . H 4 HOH 3 204 9 HOH HOH B . H 4 HOH 4 205 11 HOH HOH B . H 4 HOH 5 206 14 HOH HOH B . H 4 HOH 6 207 17 HOH HOH B . H 4 HOH 7 208 18 HOH HOH B . H 4 HOH 8 209 25 HOH HOH B . H 4 HOH 9 210 26 HOH HOH B . H 4 HOH 10 211 29 HOH HOH B . H 4 HOH 11 212 30 HOH HOH B . H 4 HOH 12 213 31 HOH HOH B . H 4 HOH 13 214 32 HOH HOH B . H 4 HOH 14 215 35 HOH HOH B . H 4 HOH 15 216 36 HOH HOH B . H 4 HOH 16 217 37 HOH HOH B . H 4 HOH 17 218 38 HOH HOH B . H 4 HOH 18 219 40 HOH HOH B . H 4 HOH 19 220 41 HOH HOH B . H 4 HOH 20 222 43 HOH HOH B . H 4 HOH 21 223 46 HOH HOH B . H 4 HOH 22 224 47 HOH HOH B . H 4 HOH 23 225 48 HOH HOH B . H 4 HOH 24 226 49 HOH HOH B . H 4 HOH 25 227 52 HOH HOH B . H 4 HOH 26 228 55 HOH HOH B . H 4 HOH 27 229 56 HOH HOH B . H 4 HOH 28 230 59 HOH HOH B . H 4 HOH 29 231 60 HOH HOH B . H 4 HOH 30 232 62 HOH HOH B . H 4 HOH 31 233 64 HOH HOH B . H 4 HOH 32 234 71 HOH HOH B . H 4 HOH 33 235 72 HOH HOH B . H 4 HOH 34 236 75 HOH HOH B . H 4 HOH 35 237 79 HOH HOH B . H 4 HOH 36 238 82 HOH HOH B . H 4 HOH 37 239 83 HOH HOH B . H 4 HOH 38 240 85 HOH HOH B . H 4 HOH 39 241 86 HOH HOH B . H 4 HOH 40 242 88 HOH HOH B . H 4 HOH 41 243 89 HOH HOH B . H 4 HOH 42 244 90 HOH HOH B . H 4 HOH 43 245 92 HOH HOH B . H 4 HOH 44 246 93 HOH HOH B . H 4 HOH 45 247 96 HOH HOH B . H 4 HOH 46 248 98 HOH HOH B . H 4 HOH 47 249 103 HOH HOH B . H 4 HOH 48 250 104 HOH HOH B . H 4 HOH 49 251 105 HOH HOH B . H 4 HOH 50 252 106 HOH HOH B . H 4 HOH 51 253 107 HOH HOH B . H 4 HOH 52 254 109 HOH HOH B . H 4 HOH 53 255 110 HOH HOH B . H 4 HOH 54 256 114 HOH HOH B . H 4 HOH 55 257 115 HOH HOH B . H 4 HOH 56 258 116 HOH HOH B . H 4 HOH 57 259 118 HOH HOH B . H 4 HOH 58 260 123 HOH HOH B . H 4 HOH 59 261 125 HOH HOH B . H 4 HOH 60 262 126 HOH HOH B . H 4 HOH 61 263 127 HOH HOH B . H 4 HOH 62 264 128 HOH HOH B . H 4 HOH 63 265 133 HOH HOH B . H 4 HOH 64 266 134 HOH HOH B . H 4 HOH 65 267 135 HOH HOH B . H 4 HOH 66 268 136 HOH HOH B . H 4 HOH 67 269 146 HOH HOH B . H 4 HOH 68 270 147 HOH HOH B . H 4 HOH 69 271 149 HOH HOH B . H 4 HOH 70 272 152 HOH HOH B . H 4 HOH 71 273 155 HOH HOH B . H 4 HOH 72 274 157 HOH HOH B . H 4 HOH 73 276 161 HOH HOH B . H 4 HOH 74 277 162 HOH HOH B . H 4 HOH 75 278 163 HOH HOH B . H 4 HOH 76 279 164 HOH HOH B . H 4 HOH 77 280 165 HOH HOH B . H 4 HOH 78 281 166 HOH HOH B . H 4 HOH 79 282 167 HOH HOH B . H 4 HOH 80 283 168 HOH HOH B . H 4 HOH 81 284 169 HOH HOH B . H 4 HOH 82 285 170 HOH HOH B . H 4 HOH 83 286 171 HOH HOH B . H 4 HOH 84 287 172 HOH HOH B . H 4 HOH 85 288 173 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(phenix.refine)' ? 1 ADSC 'data collection' Quantum ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 AMoRE phasing . ? 5 # _cell.entry_id 3DDI _cell.length_a 70.084 _cell.length_b 70.084 _cell.length_c 103.313 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DDI _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DDI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '40 to 45% MPD, 0.1M Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2008-03-08 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 # _reflns.entry_id 3DDI _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 40 _reflns.number_all 21870 _reflns.number_obs 21870 _reflns.percent_possible_obs 96.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.08 _reflns.pdbx_netI_over_sigmaI 7.0 _reflns.B_iso_Wilson_estimate 20.070 _reflns.pdbx_redundancy 5.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_all 97.0 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.385 _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3206 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DDI _refine.ls_d_res_high 1.900 _refine.ls_d_res_low 39.338 _refine.pdbx_ls_sigma_F 0.06 _refine.ls_percent_reflns_obs 93.570 _refine.ls_number_reflns_obs 21222 _refine.ls_R_factor_obs 0.175 _refine.ls_R_factor_R_work 0.174 _refine.ls_R_factor_R_free 0.208 _refine.ls_percent_reflns_R_free 5.080 _refine.ls_number_reflns_R_free 1079 _refine.ls_number_reflns_R_work 20143 _refine.B_iso_mean 21.690 _refine.solvent_model_param_bsol 43.286 _refine.solvent_model_param_ksol 0.373 _refine.aniso_B[1][1] -2.962 _refine.aniso_B[2][2] -2.962 _refine.aniso_B[3][3] 5.924 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.overall_FOM_work_R_set 0.869 _refine.B_iso_max 4.990 _refine.B_iso_min 64.450 _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.details ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_ion_probe_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2112 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 52 _refine_hist.number_atoms_solvent 167 _refine_hist.number_atoms_total 2331 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 39.338 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 2206 0.006 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 2990 1.121 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 328 0.067 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 380 0.004 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 826 18.700 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.900 1.987 8 88.000 2331 . 0.189 0.235 . 143 . 2474 . . 'X-RAY DIFFRACTION' 1.987 2.091 8 93.000 2503 . 0.187 0.281 . 112 . 2615 . . 'X-RAY DIFFRACTION' 2.091 2.222 8 93.000 2494 . 0.175 0.249 . 122 . 2616 . . 'X-RAY DIFFRACTION' 2.222 2.394 8 95.000 2559 . 0.179 0.255 . 132 . 2691 . . 'X-RAY DIFFRACTION' 2.394 2.635 8 96.000 2560 . 0.184 0.208 . 143 . 2703 . . 'X-RAY DIFFRACTION' 2.635 3.016 8 96.000 2544 . 0.186 0.233 . 161 . 2705 . . 'X-RAY DIFFRACTION' 3.016 3.799 8 95.000 2597 . 0.163 0.190 . 131 . 2728 . . 'X-RAY DIFFRACTION' 3.799 39.346 8 94.000 2555 . 0.151 0.156 . 135 . 2690 . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3DDI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3DDI _struct.title 'Crystal structure of the mimivirus NDK +Kpn-N62L-R107G triple mutant complexed with TDP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DDI _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;TDP phosphotransferase, ATP-binding, Kinase, Magnesium, Metal-binding, Nucleotide metabolism, Nucleotide-binding, Phosphoprotein, Transferase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NDK_MIMIV _struct_ref.pdbx_db_accession Q5UQL3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDA ISKIRRLQGNILTPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKMETDN ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DDI A 7 ? 146 ? Q5UQL3 2 ? 137 ? 2 141 2 1 3DDI B 7 ? 146 ? Q5UQL3 2 ? 137 ? 2 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DDI TYR A 1 ? UNP Q5UQL3 ? ? 'expression tag' -4 1 1 3DDI LYS A 2 ? UNP Q5UQL3 ? ? 'expression tag' -3 2 1 3DDI LYS A 3 ? UNP Q5UQL3 ? ? 'expression tag' -2 3 1 3DDI ALA A 4 ? UNP Q5UQL3 ? ? 'expression tag' -1 4 1 3DDI GLY A 5 ? UNP Q5UQL3 ? ? 'expression tag' 0 5 1 3DDI LEU A 6 ? UNP Q5UQL3 ? ? 'expression tag' 1 6 1 3DDI LEU A 67 ? UNP Q5UQL3 ASN 62 'engineered mutation' 62 7 1 3DDI THR A 97 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 92 8 1 3DDI ASN A 98 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 93 9 1 3DDI PRO A 99 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 94 10 1 3DDI LEU A 100 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 95 11 1 3DDI ALA A 101 ? UNP Q5UQL3 ILE 92 'SEE REMARK 999' 96 12 1 3DDI SER A 102 ? UNP Q5UQL3 LEU 93 'SEE REMARK 999' 97 13 1 3DDI ALA A 103 ? UNP Q5UQL3 THR 94 'SEE REMARK 999' 98 14 1 3DDI GLY A 116 ? UNP Q5UQL3 ARG 107 'engineered mutation' 111 15 2 3DDI TYR B 1 ? UNP Q5UQL3 ? ? 'expression tag' -4 16 2 3DDI LYS B 2 ? UNP Q5UQL3 ? ? 'expression tag' -3 17 2 3DDI LYS B 3 ? UNP Q5UQL3 ? ? 'expression tag' -2 18 2 3DDI ALA B 4 ? UNP Q5UQL3 ? ? 'expression tag' -1 19 2 3DDI GLY B 5 ? UNP Q5UQL3 ? ? 'expression tag' 0 20 2 3DDI LEU B 6 ? UNP Q5UQL3 ? ? 'expression tag' 1 21 2 3DDI LEU B 67 ? UNP Q5UQL3 ASN 62 'engineered mutation' 62 22 2 3DDI THR B 97 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 92 23 2 3DDI ASN B 98 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 93 24 2 3DDI PRO B 99 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 94 25 2 3DDI LEU B 100 ? UNP Q5UQL3 ? ? 'SEE REMARK 999' 95 26 2 3DDI ALA B 101 ? UNP Q5UQL3 ILE 92 'SEE REMARK 999' 96 27 2 3DDI SER B 102 ? UNP Q5UQL3 LEU 93 'SEE REMARK 999' 97 28 2 3DDI ALA B 103 ? UNP Q5UQL3 THR 94 'SEE REMARK 999' 98 29 2 3DDI GLY B 116 ? UNP Q5UQL3 ARG 107 'engineered mutation' 111 30 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? hexameric 6 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2920 ? 2 MORE -44 ? 2 'SSA (A^2)' 12510 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,B,C,D,E,F,G,H 2 1 A,C,D,G 2 3 B,E,F,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 70.0840000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 35.0420000000 -0.8660254038 -0.5000000000 0.0000000000 60.6945243988 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 14 ? ARG A 20 ? LYS A 9 ARG A 15 1 ? 7 HELX_P HELX_P2 2 LEU A 22 ? LYS A 33 ? LEU A 17 LYS A 28 1 ? 12 HELX_P HELX_P3 3 PRO A 47 ? TYR A 55 ? PRO A 42 TYR A 50 1 ? 9 HELX_P HELX_P4 4 LYS A 56 ? SER A 59 ? LYS A 51 SER A 54 5 ? 4 HELX_P HELX_P5 5 TYR A 63 ? VAL A 72 ? TYR A 58 VAL A 67 1 ? 10 HELX_P HELX_P6 6 ASP A 85 ? GLY A 95 ? ASP A 80 GLY A 90 1 ? 11 HELX_P HELX_P7 7 THR A 106 ? ALA A 112 ? THR A 101 ALA A 107 1 ? 7 HELX_P HELX_P8 8 SER A 125 ? PHE A 137 ? SER A 120 PHE A 132 1 ? 13 HELX_P HELX_P9 9 LYS B 14 ? ARG B 20 ? LYS B 9 ARG B 15 1 ? 7 HELX_P HELX_P10 10 LEU B 22 ? LYS B 33 ? LEU B 17 LYS B 28 1 ? 12 HELX_P HELX_P11 11 PRO B 47 ? TYR B 55 ? PRO B 42 TYR B 50 1 ? 9 HELX_P HELX_P12 12 LYS B 56 ? SER B 59 ? LYS B 51 SER B 54 5 ? 4 HELX_P HELX_P13 13 TYR B 63 ? VAL B 72 ? TYR B 58 VAL B 67 1 ? 10 HELX_P HELX_P14 14 ASP B 85 ? GLY B 95 ? ASP B 80 GLY B 90 1 ? 11 HELX_P HELX_P15 15 THR B 106 ? ALA B 112 ? THR B 101 ALA B 107 1 ? 7 HELX_P HELX_P16 16 SER B 125 ? PHE B 137 ? SER B 120 PHE B 132 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? E MG . MG ? ? ? 1_555 F TYD . O1A ? ? B MG 142 B TYD 201 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 142 B HOH 226 1_555 ? ? ? ? ? ? ? 2.489 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 142 B HOH 240 1_555 ? ? ? ? ? ? ? 2.407 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1A ? F TYD . ? B TYD 201 ? 1_555 MG ? E MG . ? B MG 142 ? 1_555 O ? H HOH . ? B HOH 226 ? 1_555 84.8 ? 2 O1A ? F TYD . ? B TYD 201 ? 1_555 MG ? E MG . ? B MG 142 ? 1_555 O ? H HOH . ? B HOH 240 ? 1_555 160.9 ? 3 O ? H HOH . ? B HOH 226 ? 1_555 MG ? E MG . ? B MG 142 ? 1_555 O ? H HOH . ? B HOH 240 ? 1_555 107.6 ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 36 ? TRP A 43 ? LYS A 31 TRP A 38 A 2 ILE A 76 ? GLY A 83 ? ILE A 71 GLY A 78 A 3 GLN A 7 ? ILE A 13 ? GLN A 2 ILE A 8 A 4 ILE A 120 ? ALA A 122 ? ILE A 115 ALA A 117 B 1 LYS B 36 ? TRP B 43 ? LYS B 31 TRP B 38 B 2 ILE B 76 ? GLY B 83 ? ILE B 71 GLY B 78 B 3 GLN B 7 ? ILE B 13 ? GLN B 2 ILE B 8 B 4 ILE B 120 ? ALA B 122 ? ILE B 115 ALA B 117 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 38 ? N VAL A 33 O VAL A 80 ? O VAL A 75 A 2 3 O ILE A 79 ? O ILE A 74 N VAL A 11 ? N VAL A 6 A 3 4 N LEU A 12 ? N LEU A 7 O HIS A 121 ? O HIS A 116 B 1 2 N TRP B 43 ? N TRP B 38 O ILE B 76 ? O ILE B 71 B 2 3 O ILE B 79 ? O ILE B 74 N VAL B 11 ? N VAL B 6 B 3 4 N LEU B 12 ? N LEU B 7 O HIS B 121 ? O HIS B 116 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC2 Software A MG 142 ? 1 'BINDING SITE FOR RESIDUE MG A 142' AC3 Software A TYD 201 ? 10 'BINDING SITE FOR RESIDUE TYD A 201' AC4 Software B TYD 201 ? 9 'BINDING SITE FOR RESIDUE TYD B 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC2 1 ASP A 124 ? ASP A 119 . ? 1_555 ? 2 AC3 10 LYS A 14 ? LYS A 9 . ? 1_555 ? 3 AC3 10 HIS A 58 ? HIS A 53 . ? 1_555 ? 4 AC3 10 TYR A 63 ? TYR A 58 . ? 1_555 ? 5 AC3 10 LEU A 67 ? LEU A 62 . ? 1_555 ? 6 AC3 10 ARG A 91 ? ARG A 86 . ? 1_555 ? 7 AC3 10 THR A 97 ? THR A 92 . ? 1_555 ? 8 AC3 10 ARG A 108 ? ARG A 103 . ? 1_555 ? 9 AC3 10 ILE A 115 ? ILE A 110 . ? 1_555 ? 10 AC3 10 GLY A 116 ? GLY A 111 . ? 1_555 ? 11 AC3 10 ASN A 118 ? ASN A 113 . ? 1_555 ? 12 AC4 9 LYS B 14 ? LYS B 9 . ? 1_555 ? 13 AC4 9 HIS B 58 ? HIS B 53 . ? 1_555 ? 14 AC4 9 TYR B 63 ? TYR B 58 . ? 1_555 ? 15 AC4 9 LEU B 67 ? LEU B 62 . ? 1_555 ? 16 AC4 9 ARG B 91 ? ARG B 86 . ? 1_555 ? 17 AC4 9 THR B 97 ? THR B 92 . ? 1_555 ? 18 AC4 9 ARG B 108 ? ARG B 103 . ? 1_555 ? 19 AC4 9 ILE B 115 ? ILE B 110 . ? 1_555 ? 20 AC4 9 ASN B 118 ? ASN B 113 . ? 1_555 ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 29 ? ? 84.69 24.46 2 1 LEU A 114 ? ? 71.80 -38.58 3 1 ASN B 29 ? ? 81.56 23.15 4 1 LEU B 114 ? ? 73.91 -39.88 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 258 ? G HOH . 2 1 A HOH 260 ? G HOH . # _pdbx_entry_details.entry_id 3DDI _pdbx_entry_details.sequence_details 'RESIDUES 92-94 ILT WERE REPLACED BY RESIDUES 92-98 TNPLASA.' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR -4 ? A TYR 1 2 1 Y 1 A LYS -3 ? A LYS 2 3 1 Y 1 A LYS -2 ? A LYS 3 4 1 Y 1 A ALA -1 ? A ALA 4 5 1 Y 1 A GLY 0 ? A GLY 5 6 1 Y 1 A GLU 134 ? A GLU 139 7 1 Y 1 A THR 135 ? A THR 140 8 1 Y 1 A LYS 136 ? A LYS 141 9 1 Y 1 A MET 137 ? A MET 142 10 1 Y 1 A GLU 138 ? A GLU 143 11 1 Y 1 A THR 139 ? A THR 144 12 1 Y 1 A ASP 140 ? A ASP 145 13 1 Y 1 A ASN 141 ? A ASN 146 14 1 Y 1 B TYR -4 ? B TYR 1 15 1 Y 1 B LYS -3 ? B LYS 2 16 1 Y 1 B LYS -2 ? B LYS 3 17 1 Y 1 B ALA -1 ? B ALA 4 18 1 Y 1 B GLY 0 ? B GLY 5 19 1 Y 1 B GLU 134 ? B GLU 139 20 1 Y 1 B THR 135 ? B THR 140 21 1 Y 1 B LYS 136 ? B LYS 141 22 1 Y 1 B MET 137 ? B MET 142 23 1 Y 1 B GLU 138 ? B GLU 143 24 1 Y 1 B THR 139 ? B THR 144 25 1 Y 1 B ASP 140 ? B ASP 145 26 1 Y 1 B ASN 141 ? B ASN 146 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYD PA P N S 349 TYD O1A O N N 350 TYD O2A O N N 351 TYD O3A O N N 352 TYD PB P N N 353 TYD O1B O N N 354 TYD O2B O N N 355 TYD O3B O N N 356 TYD "O5'" O N N 357 TYD "C5'" C N N 358 TYD "C4'" C N R 359 TYD "O4'" O N N 360 TYD "C3'" C N S 361 TYD "O3'" O N N 362 TYD "C2'" C N N 363 TYD "C1'" C N R 364 TYD N1 N Y N 365 TYD C2 C Y N 366 TYD O2 O N N 367 TYD N3 N Y N 368 TYD C4 C Y N 369 TYD O4 O N N 370 TYD C5 C Y N 371 TYD C5M C N N 372 TYD C6 C Y N 373 TYD HOA2 H N N 374 TYD HOB2 H N N 375 TYD HOB3 H N N 376 TYD "H5'1" H N N 377 TYD "H5'2" H N N 378 TYD "H4'" H N N 379 TYD "H3'" H N N 380 TYD "HO3'" H N N 381 TYD "H2'1" H N N 382 TYD "H2'2" H N N 383 TYD "H1'" H N N 384 TYD HN3 H N N 385 TYD H51 H N N 386 TYD H52 H N N 387 TYD H53 H N N 388 TYD H6 H N N 389 TYR N N N N 390 TYR CA C N S 391 TYR C C N N 392 TYR O O N N 393 TYR CB C N N 394 TYR CG C Y N 395 TYR CD1 C Y N 396 TYR CD2 C Y N 397 TYR CE1 C Y N 398 TYR CE2 C Y N 399 TYR CZ C Y N 400 TYR OH O N N 401 TYR OXT O N N 402 TYR H H N N 403 TYR H2 H N N 404 TYR HA H N N 405 TYR HB2 H N N 406 TYR HB3 H N N 407 TYR HD1 H N N 408 TYR HD2 H N N 409 TYR HE1 H N N 410 TYR HE2 H N N 411 TYR HH H N N 412 TYR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYD PA O1A doub N N 334 TYD PA O2A sing N N 335 TYD PA O3A sing N N 336 TYD PA "O5'" sing N N 337 TYD O2A HOA2 sing N N 338 TYD O3A PB sing N N 339 TYD PB O1B doub N N 340 TYD PB O2B sing N N 341 TYD PB O3B sing N N 342 TYD O2B HOB2 sing N N 343 TYD O3B HOB3 sing N N 344 TYD "O5'" "C5'" sing N N 345 TYD "C5'" "C4'" sing N N 346 TYD "C5'" "H5'1" sing N N 347 TYD "C5'" "H5'2" sing N N 348 TYD "C4'" "O4'" sing N N 349 TYD "C4'" "C3'" sing N N 350 TYD "C4'" "H4'" sing N N 351 TYD "O4'" "C1'" sing N N 352 TYD "C3'" "O3'" sing N N 353 TYD "C3'" "C2'" sing N N 354 TYD "C3'" "H3'" sing N N 355 TYD "O3'" "HO3'" sing N N 356 TYD "C2'" "C1'" sing N N 357 TYD "C2'" "H2'1" sing N N 358 TYD "C2'" "H2'2" sing N N 359 TYD "C1'" N1 sing N N 360 TYD "C1'" "H1'" sing N N 361 TYD N1 C2 sing Y N 362 TYD N1 C6 sing Y N 363 TYD C2 O2 doub N N 364 TYD C2 N3 sing Y N 365 TYD N3 C4 sing Y N 366 TYD N3 HN3 sing N N 367 TYD C4 O4 doub N N 368 TYD C4 C5 sing Y N 369 TYD C5 C5M sing N N 370 TYD C5 C6 doub Y N 371 TYD C5M H51 sing N N 372 TYD C5M H52 sing N N 373 TYD C5M H53 sing N N 374 TYD C6 H6 sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # _atom_sites.entry_id 3DDI _atom_sites.fract_transf_matrix[1][1] 0.014269 _atom_sites.fract_transf_matrix[1][2] 0.008238 _atom_sites.fract_transf_matrix[1][3] -0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016476 _atom_sites.fract_transf_matrix[2][3] -0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009679 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_