HEADER TRANSFERASE 05-JUN-08 3DDI TITLE CRYSTAL STRUCTURE OF THE MIMIVIRUS NDK +KPN-N62L-R107G TRIPLE MUTANT TITLE 2 COMPLEXED WITH TDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSIDE DIPHOSPHATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDK, NDP KINASE; COMPND 5 EC: 2.7.4.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_COMMON: APMV; SOURCE 4 ORGANISM_TAXID: 212035; SOURCE 5 GENE: NDK, MIMI_R418; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDIGS02 KEYWDS TDP PHOSPHOTRANSFERASE, ATP-BINDING, KINASE, MAGNESIUM, METAL- KEYWDS 2 BINDING, NUCLEOTIDE METABOLISM, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JEUDY,A.LARTIGUE,J.M.CLAVERIE,A.ABERGEL REVDAT 4 21-FEB-24 3DDI 1 REMARK REVDAT 3 20-OCT-21 3DDI 1 REMARK SEQADV LINK REVDAT 2 25-AUG-09 3DDI 1 JRNL REVDAT 1 16-JUN-09 3DDI 0 JRNL AUTH S.JEUDY,A.LARTIGUE,J.M.CLAVERIE,C.ABERGEL JRNL TITL DISSECTING THE UNIQUE NUCLEOTIDE SPECIFICITY OF MIMIVIRUS JRNL TITL 2 NUCLEOSIDE DIPHOSPHATE KINASE. JRNL REF J.VIROL. V. 83 7142 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19439473 JRNL DOI 10.1128/JVI.00511-09 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 21222 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3460 - 3.7990 0.94 2555 135 0.1510 0.1560 REMARK 3 2 3.7990 - 3.0160 0.95 2597 131 0.1630 0.1900 REMARK 3 3 3.0160 - 2.6350 0.96 2544 161 0.1860 0.2330 REMARK 3 4 2.6350 - 2.3940 0.96 2560 143 0.1840 0.2080 REMARK 3 5 2.3940 - 2.2220 0.95 2559 132 0.1790 0.2550 REMARK 3 6 2.2220 - 2.0910 0.93 2494 122 0.1750 0.2490 REMARK 3 7 2.0910 - 1.9870 0.93 2503 112 0.1870 0.2810 REMARK 3 8 1.9870 - 1.9000 0.88 2331 143 0.1890 0.2350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 43.29 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.96200 REMARK 3 B22 (A**2) : -2.96200 REMARK 3 B33 (A**2) : 5.92400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2206 REMARK 3 ANGLE : 1.121 2990 REMARK 3 CHIRALITY : 0.067 328 REMARK 3 PLANARITY : 0.004 380 REMARK 3 DIHEDRAL : 18.700 826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21870 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38500 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 TO 45% MPD, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.65650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.65650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.65650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 70.08400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 35.04200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 60.69452 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 35.04200 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 60.69452 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 258 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 260 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A -4 REMARK 465 LYS A -3 REMARK 465 LYS A -2 REMARK 465 ALA A -1 REMARK 465 GLY A 0 REMARK 465 GLU A 134 REMARK 465 THR A 135 REMARK 465 LYS A 136 REMARK 465 MET A 137 REMARK 465 GLU A 138 REMARK 465 THR A 139 REMARK 465 ASP A 140 REMARK 465 ASN A 141 REMARK 465 TYR B -4 REMARK 465 LYS B -3 REMARK 465 LYS B -2 REMARK 465 ALA B -1 REMARK 465 GLY B 0 REMARK 465 GLU B 134 REMARK 465 THR B 135 REMARK 465 LYS B 136 REMARK 465 MET B 137 REMARK 465 GLU B 138 REMARK 465 THR B 139 REMARK 465 ASP B 140 REMARK 465 ASN B 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 24.46 84.69 REMARK 500 LEU A 114 -38.58 71.80 REMARK 500 ASN B 29 23.15 81.56 REMARK 500 LEU B 114 -39.88 73.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 142 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYD B 201 O1A REMARK 620 2 HOH B 226 O 84.8 REMARK 620 3 HOH B 240 O 160.9 107.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B8P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MIMIVIRUS NDK REMARK 900 RELATED ID: 2B8Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MIMIVIRUS NDK COMPLEXED WITH TDP REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 92-94 ILT WERE REPLACED BY RESIDUES 92-98 TNPLASA. DBREF 3DDI A 2 141 UNP Q5UQL3 NDK_MIMIV 2 137 DBREF 3DDI B 2 141 UNP Q5UQL3 NDK_MIMIV 2 137 SEQADV 3DDI TYR A -4 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LYS A -3 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LYS A -2 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI ALA A -1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI GLY A 0 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LEU A 1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LEU A 62 UNP Q5UQL3 ASN 62 ENGINEERED MUTATION SEQADV 3DDI THR A 92 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI ASN A 93 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI PRO A 94 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI LEU A 95 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI ALA A 96 UNP Q5UQL3 ILE 92 SEE REMARK 999 SEQADV 3DDI SER A 97 UNP Q5UQL3 LEU 93 SEE REMARK 999 SEQADV 3DDI ALA A 98 UNP Q5UQL3 THR 94 SEE REMARK 999 SEQADV 3DDI GLY A 111 UNP Q5UQL3 ARG 107 ENGINEERED MUTATION SEQADV 3DDI TYR B -4 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LYS B -3 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LYS B -2 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI ALA B -1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI GLY B 0 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LEU B 1 UNP Q5UQL3 EXPRESSION TAG SEQADV 3DDI LEU B 62 UNP Q5UQL3 ASN 62 ENGINEERED MUTATION SEQADV 3DDI THR B 92 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI ASN B 93 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI PRO B 94 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI LEU B 95 UNP Q5UQL3 SEE REMARK 999 SEQADV 3DDI ALA B 96 UNP Q5UQL3 ILE 92 SEE REMARK 999 SEQADV 3DDI SER B 97 UNP Q5UQL3 LEU 93 SEE REMARK 999 SEQADV 3DDI ALA B 98 UNP Q5UQL3 THR 94 SEE REMARK 999 SEQADV 3DDI GLY B 111 UNP Q5UQL3 ARG 107 ENGINEERED MUTATION SEQRES 1 A 146 TYR LYS LYS ALA GLY LEU GLN ARG THR LEU VAL LEU ILE SEQRES 2 A 146 LYS PRO ASP ALA PHE GLU ARG SER LEU VAL ALA GLU ILE SEQRES 3 A 146 MET GLY ARG ILE GLU LYS LYS ASN PHE LYS ILE VAL SER SEQRES 4 A 146 MET LYS PHE TRP SER LYS ALA PRO ARG ASN LEU ILE GLU SEQRES 5 A 146 GLN HIS TYR LYS GLU HIS SER GLU GLN SER TYR PHE ASN SEQRES 6 A 146 ASP LEU CYS ASP PHE MET VAL SER GLY PRO ILE ILE SER SEQRES 7 A 146 ILE VAL TYR GLU GLY THR ASP ALA ILE SER LYS ILE ARG SEQRES 8 A 146 ARG LEU GLN GLY ASN THR ASN PRO LEU ALA SER ALA PRO SEQRES 9 A 146 GLY THR ILE ARG GLY ASP LEU ALA ASN ASP ILE GLY GLU SEQRES 10 A 146 ASN LEU ILE HIS ALA SER ASP SER GLU ASP SER ALA VAL SEQRES 11 A 146 ASP GLU ILE SER ILE TRP PHE PRO GLU THR LYS MET GLU SEQRES 12 A 146 THR ASP ASN SEQRES 1 B 146 TYR LYS LYS ALA GLY LEU GLN ARG THR LEU VAL LEU ILE SEQRES 2 B 146 LYS PRO ASP ALA PHE GLU ARG SER LEU VAL ALA GLU ILE SEQRES 3 B 146 MET GLY ARG ILE GLU LYS LYS ASN PHE LYS ILE VAL SER SEQRES 4 B 146 MET LYS PHE TRP SER LYS ALA PRO ARG ASN LEU ILE GLU SEQRES 5 B 146 GLN HIS TYR LYS GLU HIS SER GLU GLN SER TYR PHE ASN SEQRES 6 B 146 ASP LEU CYS ASP PHE MET VAL SER GLY PRO ILE ILE SER SEQRES 7 B 146 ILE VAL TYR GLU GLY THR ASP ALA ILE SER LYS ILE ARG SEQRES 8 B 146 ARG LEU GLN GLY ASN THR ASN PRO LEU ALA SER ALA PRO SEQRES 9 B 146 GLY THR ILE ARG GLY ASP LEU ALA ASN ASP ILE GLY GLU SEQRES 10 B 146 ASN LEU ILE HIS ALA SER ASP SER GLU ASP SER ALA VAL SEQRES 11 B 146 ASP GLU ILE SER ILE TRP PHE PRO GLU THR LYS MET GLU SEQRES 12 B 146 THR ASP ASN HET MG A 142 1 HET TYD A 201 25 HET MG B 142 1 HET TYD B 201 25 HETNAM MG MAGNESIUM ION HETNAM TYD THYMIDINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 TYD 2(C10 H16 N2 O11 P2) FORMUL 7 HOH *167(H2 O) HELIX 1 1 LYS A 9 ARG A 15 1 7 HELIX 2 2 LEU A 17 LYS A 28 1 12 HELIX 3 3 PRO A 42 TYR A 50 1 9 HELIX 4 4 LYS A 51 SER A 54 5 4 HELIX 5 5 TYR A 58 VAL A 67 1 10 HELIX 6 6 ASP A 80 GLY A 90 1 11 HELIX 7 7 THR A 101 ALA A 107 1 7 HELIX 8 8 SER A 120 PHE A 132 1 13 HELIX 9 9 LYS B 9 ARG B 15 1 7 HELIX 10 10 LEU B 17 LYS B 28 1 12 HELIX 11 11 PRO B 42 TYR B 50 1 9 HELIX 12 12 LYS B 51 SER B 54 5 4 HELIX 13 13 TYR B 58 VAL B 67 1 10 HELIX 14 14 ASP B 80 GLY B 90 1 11 HELIX 15 15 THR B 101 ALA B 107 1 7 HELIX 16 16 SER B 120 PHE B 132 1 13 SHEET 1 A 4 LYS A 31 TRP A 38 0 SHEET 2 A 4 ILE A 71 GLY A 78 -1 O VAL A 75 N VAL A 33 SHEET 3 A 4 GLN A 2 ILE A 8 -1 N VAL A 6 O ILE A 74 SHEET 4 A 4 ILE A 115 ALA A 117 -1 O HIS A 116 N LEU A 7 SHEET 1 B 4 LYS B 31 TRP B 38 0 SHEET 2 B 4 ILE B 71 GLY B 78 -1 O ILE B 71 N TRP B 38 SHEET 3 B 4 GLN B 2 ILE B 8 -1 N VAL B 6 O ILE B 74 SHEET 4 B 4 ILE B 115 ALA B 117 -1 O HIS B 116 N LEU B 7 LINK MG MG B 142 O1A TYD B 201 1555 1555 2.32 LINK MG MG B 142 O HOH B 226 1555 1555 2.49 LINK MG MG B 142 O HOH B 240 1555 1555 2.41 SITE 1 AC2 1 ASP A 119 SITE 1 AC3 10 LYS A 9 HIS A 53 TYR A 58 LEU A 62 SITE 2 AC3 10 ARG A 86 THR A 92 ARG A 103 ILE A 110 SITE 3 AC3 10 GLY A 111 ASN A 113 SITE 1 AC4 9 LYS B 9 HIS B 53 TYR B 58 LEU B 62 SITE 2 AC4 9 ARG B 86 THR B 92 ARG B 103 ILE B 110 SITE 3 AC4 9 ASN B 113 CRYST1 70.084 70.084 103.313 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014269 0.008238 0.000000 0.00000 SCALE2 0.000000 0.016476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009679 0.00000