HEADER HYDROLASE 06-JUN-08 3DDU TITLE PROLYL OLIGOPEPTIDASE WITH GSK552 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL ENDOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLYL OLIGOPEPTIDASE; POST-PROLINE CLEAVING ENZYME; PE; COMPND 5 EC: 3.4.21.26; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PREP, PEP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS POP, PROLYL OLIGOPEPTIDASE, ENDOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.P.MADAUSS,R.A.REID,C.D.HAFFNER,A.B.MILLER REVDAT 6 21-FEB-24 3DDU 1 REMARK REVDAT 5 20-OCT-21 3DDU 1 REMARK SEQADV REVDAT 4 25-OCT-17 3DDU 1 REMARK REVDAT 3 13-JUL-11 3DDU 1 VERSN REVDAT 2 24-FEB-09 3DDU 1 VERSN REVDAT 1 19-AUG-08 3DDU 0 JRNL AUTH C.D.HAFFNER,C.J.DIAZ,A.B.MILLER,R.A.REID,K.P.MADAUSS, JRNL AUTH 2 A.HASSELL,M.H.HANLON,D.J.PORTER,J.D.BECHERER,L.H.CARTER JRNL TITL PYRROLIDINYL PYRIDONE AND PYRAZINONE ANALOGUES AS POTENT JRNL TITL 2 INHIBITORS OF PROLYL OLIGOPEPTIDASE (POP) JRNL REF BIOORG.MED.CHEM.LETT. V. 18 4360 2008 JRNL REFN ISSN 0960-894X JRNL PMID 18606544 JRNL DOI 10.1016/J.BMCL.2008.06.067 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0006 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 113121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 8217 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7624 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1370 REMARK 3 BIN FREE R VALUE SET COUNT : 586 REMARK 3 BIN FREE R VALUE : 0.1810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 1234 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.952 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5866 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3946 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7958 ; 1.298 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9604 ; 0.879 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 710 ; 6.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;31.908 ;24.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 950 ;10.957 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;12.752 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 848 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6560 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1229 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1105 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4247 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2867 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2915 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 884 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 68 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3747 ; 0.827 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1444 ; 0.168 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5702 ; 1.153 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2615 ; 2.040 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2256 ; 2.822 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000047914. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.03200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.06400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0 .2M NAOAC 4.6, 9% PEG 4000, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.61050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.92650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.92650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.61050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 426 REMARK 465 GLY A 429 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 5 CG CD OE1 NE2 REMARK 470 GLN A 56 CD OE1 NE2 REMARK 470 GLU A 65 OE1 OE2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 GLU A 163 CD OE1 OE2 REMARK 470 GLN A 192 CD OE1 NE2 REMARK 470 ASP A 256 CG OD1 OD2 REMARK 470 LYS A 335 CD CE NZ REMARK 470 GLN A 388 CD OE1 NE2 REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 ASN A 483 CG OD1 ND2 REMARK 470 ILE A 498 CG1 CG2 CD1 REMARK 470 LYS A 546 CD CE NZ REMARK 470 GLU A 624 CD OE1 OE2 REMARK 470 ARG A 664 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN A 267 O HOH A 1464 4456 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 271 57.45 -152.04 REMARK 500 ASP A 284 51.21 -112.34 REMARK 500 TYR A 311 150.20 75.61 REMARK 500 ASP A 320 67.19 -152.16 REMARK 500 SER A 346 -55.66 69.56 REMARK 500 TYR A 473 -78.66 -127.24 REMARK 500 LEU A 520 -126.76 59.22 REMARK 500 SER A 554 -118.80 71.44 REMARK 500 VAL A 578 48.62 39.55 REMARK 500 THR A 590 -113.19 33.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GOL A 1000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 552 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1000 DBREF 3DDU A 2 710 UNP P48147 PPCE_HUMAN 2 710 SEQADV 3DDU HIS A 307 UNP P48147 GLN 307 ENGINEERED MUTATION SEQADV 3DDU THR A 319 UNP P48147 TRP 319 ENGINEERED MUTATION SEQADV 3DDU THR A 360 UNP P48147 ILE 360 ENGINEERED MUTATION SEQADV 3DDU ILE A 374 UNP P48147 THR 374 ENGINEERED MUTATION SEQADV 3DDU ASN A 667 UNP P48147 SER 667 ENGINEERED MUTATION SEQRES 1 A 709 LEU SER PHE GLN TYR PRO ASP VAL TYR ARG ASP GLU THR SEQRES 2 A 709 ALA VAL GLN ASP TYR HIS GLY HIS LYS ILE CYS ASP PRO SEQRES 3 A 709 TYR ALA TRP LEU GLU ASP PRO ASP SER GLU GLN THR LYS SEQRES 4 A 709 ALA PHE VAL GLU ALA GLN ASN LYS ILE THR VAL PRO PHE SEQRES 5 A 709 LEU GLU GLN CYS PRO ILE ARG GLY LEU TYR LYS GLU ARG SEQRES 6 A 709 MET THR GLU LEU TYR ASP TYR PRO LYS TYR SER CYS HIS SEQRES 7 A 709 PHE LYS LYS GLY LYS ARG TYR PHE TYR PHE TYR ASN THR SEQRES 8 A 709 GLY LEU GLN ASN GLN ARG VAL LEU TYR VAL GLN ASP SER SEQRES 9 A 709 LEU GLU GLY GLU ALA ARG VAL PHE LEU ASP PRO ASN ILE SEQRES 10 A 709 LEU SER ASP ASP GLY THR VAL ALA LEU ARG GLY TYR ALA SEQRES 11 A 709 PHE SER GLU ASP GLY GLU TYR PHE ALA TYR GLY LEU SER SEQRES 12 A 709 ALA SER GLY SER ASP TRP VAL THR ILE LYS PHE MET LYS SEQRES 13 A 709 VAL ASP GLY ALA LYS GLU LEU PRO ASP VAL LEU GLU ARG SEQRES 14 A 709 VAL LYS PHE SER CYS MET ALA TRP THR HIS ASP GLY LYS SEQRES 15 A 709 GLY MET PHE TYR ASN SER TYR PRO GLN GLN ASP GLY LYS SEQRES 16 A 709 SER ASP GLY THR GLU THR SER THR ASN LEU HIS GLN LYS SEQRES 17 A 709 LEU TYR TYR HIS VAL LEU GLY THR ASP GLN SER GLU ASP SEQRES 18 A 709 ILE LEU CYS ALA GLU PHE PRO ASP GLU PRO LYS TRP MET SEQRES 19 A 709 GLY GLY ALA GLU LEU SER ASP ASP GLY ARG TYR VAL LEU SEQRES 20 A 709 LEU SER ILE ARG GLU GLY CYS ASP PRO VAL ASN ARG LEU SEQRES 21 A 709 TRP TYR CYS ASP LEU GLN GLN GLU SER SER GLY ILE ALA SEQRES 22 A 709 GLY ILE LEU LYS TRP VAL LYS LEU ILE ASP ASN PHE GLU SEQRES 23 A 709 GLY GLU TYR ASP TYR VAL THR ASN GLU GLY THR VAL PHE SEQRES 24 A 709 THR PHE LYS THR ASN ARG HIS SER PRO ASN TYR ARG VAL SEQRES 25 A 709 ILE ASN ILE ASP PHE THR ASP PRO GLU GLU SER LYS TRP SEQRES 26 A 709 LYS VAL LEU VAL PRO GLU HIS GLU LYS ASP VAL LEU GLU SEQRES 27 A 709 TRP ILE ALA CYS VAL ARG SER ASN PHE LEU VAL LEU CYS SEQRES 28 A 709 TYR LEU HIS ASP VAL LYS ASN THR LEU GLN LEU HIS ASP SEQRES 29 A 709 LEU THR THR GLY ALA LEU LEU LYS ILE PHE PRO LEU ASP SEQRES 30 A 709 VAL GLY SER ILE VAL GLY TYR SER GLY GLN LYS LYS ASP SEQRES 31 A 709 THR GLU ILE PHE TYR GLN PHE THR SER PHE LEU SER PRO SEQRES 32 A 709 GLY ILE ILE TYR HIS CYS ASP LEU THR LYS GLU GLU LEU SEQRES 33 A 709 GLU PRO ARG VAL PHE ARG GLU VAL THR VAL LYS GLY ILE SEQRES 34 A 709 ASP ALA SER ASP TYR GLN THR VAL GLN ILE PHE TYR PRO SEQRES 35 A 709 SER LYS ASP GLY THR LYS ILE PRO MET PHE ILE VAL HIS SEQRES 36 A 709 LYS LYS GLY ILE LYS LEU ASP GLY SER HIS PRO ALA PHE SEQRES 37 A 709 LEU TYR GLY TYR GLY GLY PHE ASN ILE SER ILE THR PRO SEQRES 38 A 709 ASN TYR SER VAL SER ARG LEU ILE PHE VAL ARG HIS MET SEQRES 39 A 709 GLY GLY ILE LEU ALA VAL ALA ASN ILE ARG GLY GLY GLY SEQRES 40 A 709 GLU TYR GLY GLU THR TRP HIS LYS GLY GLY ILE LEU ALA SEQRES 41 A 709 ASN LYS GLN ASN CYS PHE ASP ASP PHE GLN CYS ALA ALA SEQRES 42 A 709 GLU TYR LEU ILE LYS GLU GLY TYR THR SER PRO LYS ARG SEQRES 43 A 709 LEU THR ILE ASN GLY GLY SER ASN GLY GLY LEU LEU VAL SEQRES 44 A 709 ALA ALA CYS ALA ASN GLN ARG PRO ASP LEU PHE GLY CYS SEQRES 45 A 709 VAL ILE ALA GLN VAL GLY VAL MET ASP MET LEU LYS PHE SEQRES 46 A 709 HIS LYS TYR THR ILE GLY HIS ALA TRP THR THR ASP TYR SEQRES 47 A 709 GLY CYS SER ASP SER LYS GLN HIS PHE GLU TRP LEU VAL SEQRES 48 A 709 LYS TYR SER PRO LEU HIS ASN VAL LYS LEU PRO GLU ALA SEQRES 49 A 709 ASP ASP ILE GLN TYR PRO SER MET LEU LEU LEU THR ALA SEQRES 50 A 709 ASP HIS ASP ASP ARG VAL VAL PRO LEU HIS SER LEU LYS SEQRES 51 A 709 PHE ILE ALA THR LEU GLN TYR ILE VAL GLY ARG SER ARG SEQRES 52 A 709 LYS GLN ASN ASN PRO LEU LEU ILE HIS VAL ASP THR LYS SEQRES 53 A 709 ALA GLY HIS GLY ALA GLY LYS PRO THR ALA LYS VAL ILE SEQRES 54 A 709 GLU GLU VAL SER ASP MET PHE ALA PHE ILE ALA ARG CYS SEQRES 55 A 709 LEU ASN VAL ASP TRP ILE PRO HET ACT A 801 4 HET ACT A 802 4 HET ACT A 803 4 HET ACT A 804 4 HET ACT A 805 4 HET 552 A 901 27 HET GOL A1000 5 HETNAM ACT ACETATE ION HETNAM 552 (6S)-1-CHLORO-3-[(4-FLUOROBENZYL)OXY]-6-(PYRROLIDIN-1- HETNAM 2 552 YLCARBONYL)PYRROLO[1,2-A]PYRAZIN-4(6H)-ONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACT 5(C2 H3 O2 1-) FORMUL 7 552 C19 H17 CL F N3 O3 FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *1234(H2 O) HELIX 1 1 TYR A 28 ASP A 33 5 6 HELIX 2 2 SER A 36 GLN A 56 1 21 HELIX 3 3 PRO A 58 TYR A 71 1 14 HELIX 4 4 ASP A 115 SER A 120 5 6 HELIX 5 5 ASP A 218 ASP A 222 5 5 HELIX 6 6 GLN A 267 GLU A 269 5 3 HELIX 7 7 GLU A 322 TRP A 326 5 5 HELIX 8 8 ASP A 431 SER A 433 5 3 HELIX 9 9 SER A 485 GLY A 496 1 12 HELIX 10 10 TYR A 510 GLY A 517 1 8 HELIX 11 11 GLY A 518 ASN A 522 5 5 HELIX 12 12 LYS A 523 GLU A 540 1 18 HELIX 13 13 SER A 544 LYS A 546 5 3 HELIX 14 14 SER A 554 ARG A 567 1 14 HELIX 15 15 PRO A 568 PHE A 571 5 4 HELIX 16 16 LYS A 585 TYR A 589 5 5 HELIX 17 17 ILE A 591 ALA A 594 5 4 HELIX 18 18 TRP A 595 GLY A 600 1 6 HELIX 19 19 SER A 604 SER A 615 1 12 HELIX 20 20 PRO A 616 ASN A 619 5 4 HELIX 21 21 PRO A 646 VAL A 660 1 15 HELIX 22 22 PRO A 685 ASN A 705 1 21 SHEET 1 A 2 VAL A 16 TYR A 19 0 SHEET 2 A 2 HIS A 22 CYS A 25 -1 O HIS A 22 N TYR A 19 SHEET 1 B 3 LYS A 75 TYR A 76 0 SHEET 2 B 3 ARG A 85 ASN A 91 -1 O ASN A 91 N LYS A 75 SHEET 3 B 3 PHE A 80 LYS A 82 -1 N PHE A 80 O PHE A 87 SHEET 1 C 4 LYS A 75 TYR A 76 0 SHEET 2 C 4 ARG A 85 ASN A 91 -1 O ASN A 91 N LYS A 75 SHEET 3 C 4 VAL A 99 GLN A 103 -1 O TYR A 101 N TYR A 88 SHEET 4 C 4 ARG A 111 LEU A 114 -1 O PHE A 113 N LEU A 100 SHEET 1 D 4 VAL A 125 PHE A 132 0 SHEET 2 D 4 TYR A 138 ALA A 145 -1 O GLY A 142 N GLY A 129 SHEET 3 D 4 VAL A 151 LYS A 157 -1 O LYS A 154 N TYR A 141 SHEET 4 D 4 LYS A 162 VAL A 171 -1 O VAL A 171 N VAL A 151 SHEET 1 E 4 MET A 176 TRP A 178 0 SHEET 2 E 4 GLY A 184 SER A 189 -1 O PHE A 186 N ALA A 177 SHEET 3 E 4 LYS A 209 VAL A 214 -1 O HIS A 213 N MET A 185 SHEET 4 E 4 ILE A 223 ALA A 226 -1 O CYS A 225 N LEU A 210 SHEET 1 F 4 MET A 235 LEU A 240 0 SHEET 2 F 4 TYR A 246 ARG A 252 -1 O LEU A 248 N GLU A 239 SHEET 3 F 4 ARG A 260 ASP A 265 -1 O TRP A 262 N LEU A 249 SHEET 4 F 4 VAL A 280 ILE A 283 -1 O VAL A 280 N TYR A 263 SHEET 1 G 4 TYR A 290 GLU A 296 0 SHEET 2 G 4 VAL A 299 THR A 304 -1 O THR A 301 N THR A 294 SHEET 3 G 4 ARG A 312 ASP A 317 -1 O ILE A 316 N PHE A 300 SHEET 4 G 4 LYS A 327 VAL A 330 -1 O LYS A 327 N ASN A 315 SHEET 1 H 4 VAL A 337 VAL A 344 0 SHEET 2 H 4 PHE A 348 HIS A 355 -1 O VAL A 350 N ALA A 342 SHEET 3 H 4 LYS A 358 ASP A 365 -1 O LYS A 358 N HIS A 355 SHEET 4 H 4 LEU A 371 PHE A 375 -1 O LEU A 372 N LEU A 363 SHEET 1 I 4 SER A 381 SER A 386 0 SHEET 2 I 4 GLU A 393 THR A 399 -1 O GLN A 397 N VAL A 383 SHEET 3 I 4 ILE A 406 ASP A 411 -1 O TYR A 408 N TYR A 396 SHEET 4 I 4 ARG A 420 ARG A 423 -1 O PHE A 422 N ILE A 407 SHEET 1 J 8 TYR A 435 PRO A 443 0 SHEET 2 J 8 LYS A 449 LYS A 457 -1 O ILE A 450 N TYR A 442 SHEET 3 J 8 ILE A 498 ALA A 502 -1 O LEU A 499 N VAL A 455 SHEET 4 J 8 ALA A 468 TYR A 471 1 N TYR A 471 O ALA A 500 SHEET 5 J 8 LEU A 548 GLY A 553 1 O THR A 549 N LEU A 470 SHEET 6 J 8 CYS A 573 GLN A 577 1 O ILE A 575 N ILE A 550 SHEET 7 J 8 SER A 632 ALA A 638 1 O LEU A 634 N VAL A 574 SHEET 8 J 8 LEU A 670 ASP A 675 1 O LEU A 671 N MET A 633 SITE 1 AC1 4 TYR A 473 SER A 554 HIS A 680 HOH A1213 SITE 1 AC2 5 PHE A 401 ARG A 488 LEU A 499 HOH A1543 SITE 2 AC2 5 HOH A2062 SITE 1 AC3 6 PRO A 7 GLN A 657 ARG A 662 HOH A1153 SITE 2 AC3 6 HOH A1587 HOH A2116 SITE 1 AC4 5 SER A 485 SER A 487 HOH A1175 HOH A1695 SITE 2 AC4 5 HOH A1827 SITE 1 AC5 9 LEU A 70 ILE A 430 TYR A 435 LEU A 489 SITE 2 AC5 9 ILE A 490 ARG A 493 HIS A 494 HOH A1456 SITE 3 AC5 9 HOH A2236 SITE 1 AC6 8 PHE A 173 MET A 235 ARG A 252 GLY A 254 SITE 2 AC6 8 PHE A 476 SER A 554 TRP A 595 ARG A 643 SITE 1 AC7 7 ALA A 226 GLU A 227 PHE A 228 ILE A 276 SITE 2 AC7 7 HOH A1001 HOH A1244 HOH A1581 CRYST1 71.221 99.883 111.853 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008940 0.00000