HEADER TRANSCRIPTION REGULATOR 06-JUN-08 3DDV TITLE THE CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR (GNTR FAMILY) TITLE 2 FROM ENTEROCOCCUS FAECALIS V583 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR (GNTR FAMILY); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 STRAIN: V583; SOURCE 4 GENE: GI:29343357; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS TRANSCRIPTIONAL REGULATOR (GNTR FAMILY, STRUCTURE GENOMICS, PSI2, KEYWDS 2 MCSG, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,M.ZHOU,M.BARGASSA,Z.OTWINOWSKI,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 21-FEB-24 3DDV 1 REMARK REVDAT 4 25-OCT-17 3DDV 1 REMARK REVDAT 3 13-JUL-11 3DDV 1 VERSN REVDAT 2 24-FEB-09 3DDV 1 VERSN REVDAT 1 07-OCT-08 3DDV 0 JRNL AUTH R.ZHANG,M.ZHOU,M.BARGASSA,Z.OTWINOWSKI,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE TRANSCRIPTIONAL REGULATOR (GNTR JRNL TITL 2 FAMILY) FROM ENTEROCOCCUS FAECALIS V583 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 28847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1622 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4273 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3013 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5759 ; 2.008 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7280 ; 1.021 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 8.379 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;37.183 ;23.239 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 756 ;19.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;20.320 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 619 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4730 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 928 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 841 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3221 ; 0.212 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2112 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2563 ; 0.099 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 148 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.056 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.221 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.386 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3241 ; 1.165 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1034 ; 0.156 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4177 ; 1.429 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1968 ; 2.063 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1582 ; 3.064 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 145 REMARK 3 RESIDUE RANGE : B 7 B 145 REMARK 3 RESIDUE RANGE : C 5 C 145 REMARK 3 RESIDUE RANGE : D 7 D 144 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5490 28.1110 36.1450 REMARK 3 T TENSOR REMARK 3 T11: -0.2257 T22: 0.3714 REMARK 3 T33: -0.0185 T12: 0.0054 REMARK 3 T13: -0.0203 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 0.2291 L22: 0.7648 REMARK 3 L33: 2.1234 L12: -0.1819 REMARK 3 L13: 0.6752 L23: -0.2487 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: 0.0489 S13: -0.0817 REMARK 3 S21: -0.0133 S22: -0.0626 S23: 0.0509 REMARK 3 S31: 0.1112 S32: -0.0193 S33: -0.1218 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DDV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-08. REMARK 100 THE DEPOSITION ID IS D_1000047915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 80.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 2M AMMONIUM SULFATE, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 160.03933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.01967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.01967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 160.03933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTED AS DIMER. THE DEPOSITED MOLA/MOLB AND REMARK 300 MOLC/MOLD ARE TWO DIMERS IN THE ASYMMTRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -43.07650 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.61069 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 80.01967 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 GLN A 2 REMARK 465 SER A 61 REMARK 465 GLN A 62 REMARK 465 TYR A 63 REMARK 465 GLY A 64 REMARK 465 LYS A 65 REMARK 465 SER A 66 REMARK 465 GLU A 67 REMARK 465 ILE A 68 REMARK 465 THR A 69 REMARK 465 ASN A 70 REMARK 465 SER A 71 REMARK 465 PHE A 72 REMARK 465 TYR A 73 REMARK 465 LYS A 74 REMARK 465 THR A 75 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 ALA A 78 REMARK 465 LYS A 79 REMARK 465 SER A 80 REMARK 465 GLY A 81 REMARK 465 HIS A 82 REMARK 465 SER B 1 REMARK 465 GLN B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 6 REMARK 465 SER C 1 REMARK 465 SER C 61 REMARK 465 GLN C 62 REMARK 465 TYR C 63 REMARK 465 GLY C 64 REMARK 465 LYS C 65 REMARK 465 SER C 66 REMARK 465 GLU C 67 REMARK 465 ILE C 68 REMARK 465 THR C 69 REMARK 465 ASN C 70 REMARK 465 SER C 71 REMARK 465 PHE C 72 REMARK 465 TYR C 73 REMARK 465 LYS C 74 REMARK 465 THR C 75 REMARK 465 LEU C 76 REMARK 465 GLU C 77 REMARK 465 ALA C 78 REMARK 465 LYS C 79 REMARK 465 SER C 80 REMARK 465 GLY C 81 REMARK 465 HIS C 82 REMARK 465 LYS C 83 REMARK 465 ILE C 84 REMARK 465 SER D 1 REMARK 465 GLN D 2 REMARK 465 ASN D 3 REMARK 465 ARG D 4 REMARK 465 VAL D 5 REMARK 465 PRO D 6 REMARK 465 LYS D 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 90 OE1 GLU B 140 2.16 REMARK 500 O LEU B 76 OG SER B 80 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 108 CG ARG B 108 CD 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 131 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 84 -157.77 -107.63 REMARK 500 SER A 137 84.16 59.20 REMARK 500 ARG A 138 -42.12 130.13 REMARK 500 TYR B 13 109.25 -169.56 REMARK 500 GLN B 27 72.27 56.52 REMARK 500 GLU B 31 -17.29 81.21 REMARK 500 ASP B 45 11.77 56.88 REMARK 500 SER B 61 -39.80 -37.93 REMARK 500 ASP C 45 -4.00 69.16 REMARK 500 ILE C 106 -168.93 -123.43 REMARK 500 ASN C 123 -19.32 -44.51 REMARK 500 ALA C 135 62.78 -66.77 REMARK 500 SER C 137 63.61 65.20 REMARK 500 ARG C 138 -50.49 140.28 REMARK 500 TYR D 13 92.22 -170.74 REMARK 500 ASP D 45 9.77 59.73 REMARK 500 VAL D 60 -3.13 -141.15 REMARK 500 SER D 71 48.89 -149.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 146 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC85201 RELATED DB: TARGETDB DBREF 3DDV A 1 145 PDB 3DDV 3DDV 1 145 DBREF 3DDV B 1 145 PDB 3DDV 3DDV 1 145 DBREF 3DDV C 1 145 PDB 3DDV 3DDV 1 145 DBREF 3DDV D 1 145 PDB 3DDV 3DDV 1 145 SEQRES 1 A 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 A 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 A 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 A 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 A 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 A 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 A 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 A 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 A 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 A 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 A 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 A 145 GLU LYS SEQRES 1 B 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 B 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 B 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 B 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 B 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 B 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 B 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 B 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 B 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 B 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 B 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 B 145 GLU LYS SEQRES 1 C 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 C 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 C 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 C 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 C 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 C 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 C 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 C 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 C 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 C 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 C 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 C 145 GLU LYS SEQRES 1 D 145 SER GLN ASN ARG VAL PRO SER SER ARG THR VAL SER TYR SEQRES 2 D 145 PHE VAL ALA LYS PRO SER SER SER GLU MET GLU LYS LEU SEQRES 3 D 145 GLN LEU GLY PRO GLU ASP SER ILE LEU ARG MET GLU ARG SEQRES 4 D 145 ILE ARG PHE ALA ASP ASP ILE PRO ILE CYS PHE GLU VAL SEQRES 5 D 145 ALA SER ILE PRO TYR SER LEU VAL SER GLN TYR GLY LYS SEQRES 6 D 145 SER GLU ILE THR ASN SER PHE TYR LYS THR LEU GLU ALA SEQRES 7 D 145 LYS SER GLY HIS LYS ILE GLY HIS SER ASN GLN THR ILE SEQRES 8 D 145 SER ALA VAL GLN ALA SER GLU GLN ILE ALA GLU TYR LEU SEQRES 9 D 145 GLU ILE LYS ARG GLY ASP ALA ILE LEU ARG VAL ARG GLN SEQRES 10 D 145 VAL SER TYR PHE GLU ASN GLY LEU PRO PHE GLU TYR VAL SEQRES 11 D 145 ARG THR GLN TYR ALA GLY SER ARG PHE GLU PHE TYR LEU SEQRES 12 D 145 GLU LYS HET MG A 146 1 HET MG B 146 1 HET MG D 146 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 3(MG 2+) FORMUL 8 HOH *64(H2 O) HELIX 1 1 SER A 19 GLN A 27 1 9 HELIX 2 2 SER A 58 VAL A 60 5 3 HELIX 3 3 SER A 97 LEU A 104 1 8 HELIX 4 4 SER B 19 GLN B 27 1 9 HELIX 5 5 SER B 58 VAL B 60 5 3 HELIX 6 6 GLY B 64 SER B 71 1 8 HELIX 7 7 SER B 71 GLY B 81 1 11 HELIX 8 8 SER B 97 GLU B 105 1 9 HELIX 9 9 SER B 137 PHE B 139 5 3 HELIX 10 10 SER C 19 GLN C 27 1 9 HELIX 11 11 SER C 58 VAL C 60 5 3 HELIX 12 12 SER C 97 GLU C 105 1 9 HELIX 13 13 SER D 19 GLN D 27 1 9 HELIX 14 14 SER D 58 VAL D 60 5 3 HELIX 15 15 GLY D 64 SER D 71 1 8 HELIX 16 16 SER D 71 GLY D 81 1 11 HELIX 17 17 SER D 97 GLU D 105 1 9 HELIX 18 18 SER D 137 PHE D 139 5 3 SHEET 1 A 7 PRO A 6 ALA A 16 0 SHEET 2 A 7 ILE A 34 ALA A 43 -1 O GLU A 38 N VAL A 11 SHEET 3 A 7 ILE A 46 PRO A 56 -1 O ILE A 55 N LEU A 35 SHEET 4 A 7 PRO A 126 TYR A 134 -1 O GLN A 133 N PHE A 50 SHEET 5 A 7 ALA A 111 TYR A 120 -1 N GLN A 117 O VAL A 130 SHEET 6 A 7 SER A 87 GLN A 95 -1 N VAL A 94 O ILE A 112 SHEET 7 A 7 PHE B 141 TYR B 142 -1 O PHE B 141 N ILE A 91 SHEET 1 B 7 PHE A 141 GLU A 144 0 SHEET 2 B 7 ILE B 84 GLN B 95 -1 O ILE B 91 N PHE A 141 SHEET 3 B 7 ALA B 111 PHE B 121 -1 O ARG B 114 N SER B 92 SHEET 4 B 7 PRO B 126 ALA B 135 -1 O THR B 132 N VAL B 115 SHEET 5 B 7 ILE B 46 PRO B 56 -1 N VAL B 52 O ARG B 131 SHEET 6 B 7 ILE B 34 ALA B 43 -1 N MET B 37 O ALA B 53 SHEET 7 B 7 SER B 8 ALA B 16 -1 N ARG B 9 O ILE B 40 SHEET 1 C 7 PRO C 6 ALA C 16 0 SHEET 2 C 7 ILE C 34 ALA C 43 -1 O PHE C 42 N SER C 7 SHEET 3 C 7 ILE C 46 PRO C 56 -1 O ILE C 55 N LEU C 35 SHEET 4 C 7 PRO C 126 TYR C 134 -1 O GLN C 133 N PHE C 50 SHEET 5 C 7 ALA C 111 TYR C 120 -1 N GLN C 117 O VAL C 130 SHEET 6 C 7 SER C 87 GLN C 95 -1 N SER C 92 O ARG C 114 SHEET 7 C 7 PHE D 141 TYR D 142 -1 O PHE D 141 N ILE C 91 SHEET 1 D 7 GLU C 140 LYS C 145 0 SHEET 2 D 7 ILE D 84 GLN D 95 -1 O GLN D 89 N LEU C 143 SHEET 3 D 7 ALA D 111 PHE D 121 -1 O ARG D 114 N SER D 92 SHEET 4 D 7 PRO D 126 ALA D 135 -1 O VAL D 130 N GLN D 117 SHEET 5 D 7 ILE D 46 PRO D 56 -1 N PHE D 50 O GLN D 133 SHEET 6 D 7 ILE D 34 ALA D 43 -1 N ARG D 41 O ILE D 48 SHEET 7 D 7 SER D 8 ALA D 16 -1 N ALA D 16 O ILE D 34 CISPEP 1 GLY A 85 HIS A 86 0 10.95 CISPEP 2 GLY A 136 SER A 137 0 21.64 CISPEP 3 GLY C 136 SER C 137 0 13.33 SITE 1 AC1 3 SER A 21 TYR A 129 ARG A 131 SITE 1 AC2 3 SER B 21 TYR B 129 ARG B 131 SITE 1 AC3 1 TYR D 129 CRYST1 86.153 86.153 240.059 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011607 0.006701 0.000000 0.00000 SCALE2 0.000000 0.013403 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004166 0.00000