data_3DEE # _entry.id 3DEE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DEE pdb_00003dee 10.2210/pdb3dee/pdb RCSB RCSB047934 ? ? WWPDB D_1000047934 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 389948 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DEE _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 66 _citation.page_first 1174 _citation.page_last 1181 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20944208 _citation.pdbx_database_id_DOI 10.1107/S1744309109022672 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Das, D.' 1 ? primary 'Grishin, N.V.' 2 ? primary 'Kumar, A.' 3 ? primary 'Carlton, D.' 4 ? primary 'Bakolitsa, C.' 5 ? primary 'Miller, M.D.' 6 ? primary 'Abdubek, P.' 7 ? primary 'Astakhova, T.' 8 ? primary 'Axelrod, H.L.' 9 ? primary 'Burra, P.' 10 ? primary 'Chen, C.' 11 ? primary 'Chiu, H.J.' 12 ? primary 'Chiu, M.' 13 ? primary 'Clayton, T.' 14 ? primary 'Deller, M.C.' 15 ? primary 'Duan, L.' 16 ? primary 'Ellrott, K.' 17 ? primary 'Ernst, D.' 18 ? primary 'Farr, C.L.' 19 ? primary 'Feuerhelm, J.' 20 ? primary 'Grzechnik, A.' 21 ? primary 'Grzechnik, S.K.' 22 ? primary 'Grant, J.C.' 23 ? primary 'Han, G.W.' 24 ? primary 'Jaroszewski, L.' 25 ? primary 'Jin, K.K.' 26 ? primary 'Johnson, H.A.' 27 ? primary 'Klock, H.E.' 28 ? primary 'Knuth, M.W.' 29 ? primary 'Kozbial, P.' 30 ? primary 'Krishna, S.S.' 31 ? primary 'Marciano, D.' 32 ? primary 'McMullan, D.' 33 ? primary 'Morse, A.T.' 34 ? primary 'Nigoghossian, E.' 35 ? primary 'Nopakun, A.' 36 ? primary 'Okach, L.' 37 ? primary 'Oommachen, S.' 38 ? primary 'Paulsen, J.' 39 ? primary 'Puckett, C.' 40 ? primary 'Reyes, R.' 41 ? primary 'Rife, C.L.' 42 ? primary 'Sefcovic, N.' 43 ? primary 'Tien, H.J.' 44 ? primary 'Trame, C.B.' 45 ? primary 'van den Bedem, H.' 46 ? primary 'Weekes, D.' 47 ? primary 'Wooten, T.' 48 ? primary 'Xu, Q.' 49 ? primary 'Hodgson, K.O.' 50 ? primary 'Wooley, J.' 51 ? primary 'Elsliger, M.A.' 52 ? primary 'Deacon, A.M.' 53 ? primary 'Godzik, A.' 54 ? primary 'Lesley, S.A.' 55 ? primary 'Wilson, I.A.' 56 ? # _cell.entry_id 3DEE _cell.length_a 106.522 _cell.length_b 31.879 _cell.length_c 86.369 _cell.angle_alpha 90.000 _cell.angle_beta 115.800 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DEE _symmetry.Int_Tables_number 5 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative regulatory protein' 29005.348 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn IMIDAZOLE 69.085 1 ? ? ? ? 4 water nat water 18.015 95 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GMQPETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTPY FQEIPGEFLQYCQSLPLSDGILAL(MSE)DFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAE TALLIWRNAEDDV(MSE)YQTLDGFD(MSE)(MSE)LLEI(MSE)GSSALSFDTLAQTLVEF(MSE)PKADNWKNILLGK WSGWIEQRIIIPSLSAISEN(MSE)EGNSPSQNHLSA ; _entity_poly.pdbx_seq_one_letter_code_can ;GMQPETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTPY FQEIPGEFLQYCQSLPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAETALL IWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRIIIPSLSAISENMEGN SPSQNHLSA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 389948 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 GLN n 1 4 PRO n 1 5 GLU n 1 6 THR n 1 7 SER n 1 8 ALA n 1 9 GLN n 1 10 TYR n 1 11 GLN n 1 12 HIS n 1 13 ARG n 1 14 PHE n 1 15 SER n 1 16 GLN n 1 17 ALA n 1 18 ILE n 1 19 ARG n 1 20 GLY n 1 21 GLY n 1 22 GLU n 1 23 ALA n 1 24 ALA n 1 25 ASP n 1 26 GLY n 1 27 LEU n 1 28 PRO n 1 29 GLN n 1 30 ASP n 1 31 ARG n 1 32 LEU n 1 33 ASN n 1 34 VAL n 1 35 TYR n 1 36 ILE n 1 37 ARG n 1 38 LEU n 1 39 ILE n 1 40 ARG n 1 41 ASN n 1 42 ASN n 1 43 ILE n 1 44 HIS n 1 45 SER n 1 46 PHE n 1 47 ILE n 1 48 ASP n 1 49 ARG n 1 50 CYS n 1 51 TYR n 1 52 THR n 1 53 GLU n 1 54 THR n 1 55 ARG n 1 56 GLN n 1 57 TYR n 1 58 PHE n 1 59 ASP n 1 60 SER n 1 61 LYS n 1 62 GLU n 1 63 TRP n 1 64 SER n 1 65 ARG n 1 66 LEU n 1 67 LYS n 1 68 GLU n 1 69 GLY n 1 70 PHE n 1 71 VAL n 1 72 ARG n 1 73 ASP n 1 74 ALA n 1 75 ARG n 1 76 ALA n 1 77 GLN n 1 78 THR n 1 79 PRO n 1 80 TYR n 1 81 PHE n 1 82 GLN n 1 83 GLU n 1 84 ILE n 1 85 PRO n 1 86 GLY n 1 87 GLU n 1 88 PHE n 1 89 LEU n 1 90 GLN n 1 91 TYR n 1 92 CYS n 1 93 GLN n 1 94 SER n 1 95 LEU n 1 96 PRO n 1 97 LEU n 1 98 SER n 1 99 ASP n 1 100 GLY n 1 101 ILE n 1 102 LEU n 1 103 ALA n 1 104 LEU n 1 105 MSE n 1 106 ASP n 1 107 PHE n 1 108 GLU n 1 109 TYR n 1 110 THR n 1 111 GLN n 1 112 LEU n 1 113 LEU n 1 114 ALA n 1 115 GLU n 1 116 VAL n 1 117 ALA n 1 118 GLN n 1 119 ILE n 1 120 PRO n 1 121 ASP n 1 122 ILE n 1 123 PRO n 1 124 ASP n 1 125 ILE n 1 126 HIS n 1 127 TYR n 1 128 SER n 1 129 ASN n 1 130 ASP n 1 131 SER n 1 132 LYS n 1 133 TYR n 1 134 THR n 1 135 PRO n 1 136 SER n 1 137 PRO n 1 138 ALA n 1 139 ALA n 1 140 PHE n 1 141 ILE n 1 142 ARG n 1 143 GLN n 1 144 TYR n 1 145 ARG n 1 146 TYR n 1 147 ASP n 1 148 VAL n 1 149 THR n 1 150 HIS n 1 151 ASP n 1 152 LEU n 1 153 GLN n 1 154 GLU n 1 155 ALA n 1 156 GLU n 1 157 THR n 1 158 ALA n 1 159 LEU n 1 160 LEU n 1 161 ILE n 1 162 TRP n 1 163 ARG n 1 164 ASN n 1 165 ALA n 1 166 GLU n 1 167 ASP n 1 168 ASP n 1 169 VAL n 1 170 MSE n 1 171 TYR n 1 172 GLN n 1 173 THR n 1 174 LEU n 1 175 ASP n 1 176 GLY n 1 177 PHE n 1 178 ASP n 1 179 MSE n 1 180 MSE n 1 181 LEU n 1 182 LEU n 1 183 GLU n 1 184 ILE n 1 185 MSE n 1 186 GLY n 1 187 SER n 1 188 SER n 1 189 ALA n 1 190 LEU n 1 191 SER n 1 192 PHE n 1 193 ASP n 1 194 THR n 1 195 LEU n 1 196 ALA n 1 197 GLN n 1 198 THR n 1 199 LEU n 1 200 VAL n 1 201 GLU n 1 202 PHE n 1 203 MSE n 1 204 PRO n 1 205 LYS n 1 206 ALA n 1 207 ASP n 1 208 ASN n 1 209 TRP n 1 210 LYS n 1 211 ASN n 1 212 ILE n 1 213 LEU n 1 214 LEU n 1 215 GLY n 1 216 LYS n 1 217 TRP n 1 218 SER n 1 219 GLY n 1 220 TRP n 1 221 ILE n 1 222 GLU n 1 223 GLN n 1 224 ARG n 1 225 ILE n 1 226 ILE n 1 227 ILE n 1 228 PRO n 1 229 SER n 1 230 LEU n 1 231 SER n 1 232 ALA n 1 233 ILE n 1 234 SER n 1 235 GLU n 1 236 ASN n 1 237 MSE n 1 238 GLU n 1 239 GLY n 1 240 ASN n 1 241 SER n 1 242 PRO n 1 243 SER n 1 244 GLN n 1 245 ASN n 1 246 HIS n 1 247 LEU n 1 248 SER n 1 249 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_208969.1, NGO1945' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Neisseria gonorrhoeae FA 1090' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 242231 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 700825 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5F5I0_NEIG1 _struct_ref.pdbx_db_accession Q5F5I0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQPETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTPYF QEIPGEFLQYCQSPPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAETALLI WRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRIIIPSLSAISENMEGNS PSQNHLSA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DEE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 249 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5F5I0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 248 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 248 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DEE GLY A 1 ? UNP Q5F5I0 ? ? 'expression tag' 0 1 1 3DEE LEU A 95 ? UNP Q5F5I0 PRO 94 'SEE REMARK 999' 94 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DEE # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 45.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.36 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M magnesium chloride, 8.2% Ethanol, 0.1M Imidazole pH 8.36, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2008-05-01 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97929 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DEE _reflns.d_resolution_high 2.10 _reflns.d_resolution_low 77.850 _reflns.number_obs 13583 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_netI_over_sigmaI 5.600 _reflns.pdbx_Rsym_value 0.088 _reflns.pdbx_redundancy 3.100 _reflns.percent_possible_obs 87.200 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 31.240 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.10 2.21 ? 6800 ? 0.475 1.5 0.475 ? 3.10 ? 2201 97.90 1 1 2.21 2.35 ? 5024 ? 0.456 0.6 0.456 ? 3.10 ? 1645 77.70 2 1 2.35 2.51 ? 6084 ? 0.276 2.5 0.276 ? 3.10 ? 1964 98.30 3 1 2.51 2.71 ? 4487 ? 0.216 2.8 0.216 ? 3.10 ? 1465 78.40 4 1 2.71 2.97 ? 5218 ? 0.136 5.0 0.136 ? 3.10 ? 1709 98.40 5 1 2.97 3.32 ? 4705 ? 0.088 7.5 0.088 ? 3.10 ? 1536 98.80 6 1 3.32 3.83 ? 2170 ? 0.066 9.6 0.066 ? 3.00 ? 715 51.20 7 1 3.83 4.70 ? 2728 ? 0.039 15.7 0.039 ? 3.00 ? 900 76.00 8 1 4.70 6.64 ? 2756 ? 0.041 15.8 0.041 ? 3.00 ? 924 98.80 9 1 6.64 77.85 ? 1467 ? 0.042 12.7 0.042 ? 2.80 ? 524 97.40 10 1 # _refine.entry_id 3DEE _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 77.850 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 86.470 _refine.ls_number_reflns_obs 13555 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. CHLORIDE AND IMIDAZOLE WERE MODELED BASED ON CRYSTALLIZATION CONDITIONS. 5. THERE IS UNMODELED ELECTRON DENSITY NEAR RESIDUE A169, WHICH COULD BE PART OF THE MISSING N-TERMINUS. 6. REFLECTIONS IN THE FOLLOWING RESOLUTION RANGES CORRESPONDING TO ICE RINGS WERE OMITTED DURING INTEGRATION OF THE DIFFRACTION DATA: 3.97-3.82 A, 3.72-3.61 A, 3.50-3.39 A, 2.69-2.64 A AND 2.26-2.24 A. IN ADDITION, 14 UNUSUALLY STRONG REFLECTIONS WERE ALSO OMITTED FROM THE DATA USED FOR FINAL REFINEMENT. 7. THE NOMINAL RESOLUTION IS 2.25 A WITH 2563 OBSERVED REFLECTIONS BETWEEN 2.25-2.10 (88.8% COMPLETE FOR THIS SHELL) INCLUDED IN THE REFINEMENT. ; _refine.ls_R_factor_obs 0.225 _refine.ls_R_factor_R_work 0.223 _refine.ls_R_factor_R_free 0.267 _refine.ls_percent_reflns_R_free 4.900 _refine.ls_number_reflns_R_free 660 _refine.B_iso_mean 29.623 _refine.aniso_B[1][1] -1.440 _refine.aniso_B[2][2] 3.700 _refine.aniso_B[3][3] -2.720 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -0.520 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.pdbx_overall_ESU_R 0.269 _refine.pdbx_overall_ESU_R_Free 0.219 _refine.overall_SU_ML 0.168 _refine.overall_SU_B 12.389 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1623 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 95 _refine_hist.number_atoms_total 1725 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 77.850 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1683 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1116 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2294 1.535 1.954 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2718 0.956 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 205 3.139 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 83 32.706 24.578 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 277 11.499 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8 20.332 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 251 0.095 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1878 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 355 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 381 0.202 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1120 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 840 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 784 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 76 0.209 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 8 0.342 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 29 0.213 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1137 1.139 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 400 0.238 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1637 1.630 3.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 763 0.920 2.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 654 1.325 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.100 _refine_ls_shell.d_res_low 2.155 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.330 _refine_ls_shell.number_reflns_R_work 1059 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.R_factor_R_free 0.275 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 44 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1103 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DEE _struct.title ;CRYSTAL STRUCTURE OF A PUTATIVE REGULATORY PROTEIN INVOLVED IN TRANSCRIPTION (NGO1945) FROM NEISSERIA GONORRHOEAE FA 1090 AT 2.25 A RESOLUTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text ;PUTATIVE REGULATORY PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, TRANSCRIPTION ; _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.entry_id 3DEE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT THE PROTOMER MAY FORM A DIMER BASED ON CRYSTAL PACKING ANALYSIS.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 33 ? TYR A 51 ? ASN A 32 TYR A 50 1 ? 19 HELX_P HELX_P2 2 GLU A 53 ? PHE A 58 ? GLU A 52 PHE A 57 5 ? 6 HELX_P HELX_P3 3 ASP A 59 ? ASP A 73 ? ASP A 58 ASP A 72 1 ? 15 HELX_P HELX_P4 4 ALA A 74 ? THR A 78 ? ALA A 73 THR A 77 5 ? 5 HELX_P HELX_P5 5 TYR A 80 ? GLN A 82 ? TYR A 79 GLN A 81 5 ? 3 HELX_P HELX_P6 6 GLU A 83 ? LEU A 95 ? GLU A 82 LEU A 94 1 ? 13 HELX_P HELX_P7 7 SER A 98 ? ALA A 117 ? SER A 97 ALA A 116 1 ? 20 HELX_P HELX_P8 8 ASP A 175 ? SER A 188 ? ASP A 174 SER A 187 1 ? 14 HELX_P HELX_P9 9 SER A 191 ? VAL A 200 ? SER A 190 VAL A 199 1 ? 10 HELX_P HELX_P10 10 GLU A 201 ? MSE A 203 ? GLU A 200 MSE A 202 5 ? 3 HELX_P HELX_P11 11 ASP A 207 ? GLN A 223 ? ASP A 206 GLN A 222 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 104 C ? ? ? 1_555 A MSE 105 N ? ? A LEU 103 A MSE 104 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 105 C ? ? ? 1_555 A ASP 106 N ? ? A MSE 104 A ASP 105 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale both ? A VAL 169 C ? ? ? 1_555 A MSE 170 N ? ? A VAL 168 A MSE 169 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale4 covale both ? A MSE 170 C ? ? ? 1_555 A TYR 171 N ? ? A MSE 169 A TYR 170 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A ASP 178 C ? ? ? 1_555 A MSE 179 N ? ? A ASP 177 A MSE 178 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? A MSE 179 C ? ? ? 1_555 A MSE 180 N ? ? A MSE 178 A MSE 179 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale7 covale both ? A MSE 180 C ? ? ? 1_555 A LEU 181 N ? ? A MSE 179 A LEU 180 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale8 covale both ? A ILE 184 C ? ? ? 1_555 A MSE 185 N ? ? A ILE 183 A MSE 184 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale9 covale both ? A MSE 185 C ? ? ? 1_555 A GLY 186 N ? ? A MSE 184 A GLY 185 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale10 covale both ? A PHE 202 C ? ? ? 1_555 A MSE 203 N ? ? A PHE 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale11 covale both ? A MSE 203 C ? ? ? 1_555 A PRO 204 N ? ? A MSE 202 A PRO 203 1_555 ? ? ? ? ? ? ? 1.341 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 95 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 94 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 96 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 95 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 133 ? PRO A 135 ? TYR A 132 PRO A 134 A 2 ILE A 226 ? PRO A 228 ? ILE A 225 PRO A 227 B 1 PHE A 140 ? TYR A 146 ? PHE A 139 TYR A 145 B 2 GLU A 154 ? ARG A 163 ? GLU A 153 ARG A 162 B 3 VAL A 169 ? THR A 173 ? VAL A 168 THR A 172 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 134 ? N THR A 133 O ILE A 227 ? O ILE A 226 B 1 2 N TYR A 144 ? N TYR A 143 O THR A 157 ? O THR A 156 B 2 3 N TRP A 162 ? N TRP A 161 O MSE A 170 ? O MSE A 169 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id IMD _struct_site.pdbx_auth_seq_id 251 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE IMD A 251' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 33 ? ASN A 32 . ? 2_555 ? 2 AC1 5 GLU A 115 ? GLU A 114 . ? 1_555 ? 3 AC1 5 ARG A 163 ? ARG A 162 . ? 1_555 ? 4 AC1 5 ASP A 167 ? ASP A 166 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH A 324 . ? 1_555 ? # _atom_sites.entry_id 3DEE _atom_sites.fract_transf_matrix[1][1] 0.009388 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004539 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031368 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012860 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MET 2 1 ? ? ? A . n A 1 3 GLN 3 2 ? ? ? A . n A 1 4 PRO 4 3 ? ? ? A . n A 1 5 GLU 5 4 ? ? ? A . n A 1 6 THR 6 5 ? ? ? A . n A 1 7 SER 7 6 ? ? ? A . n A 1 8 ALA 8 7 ? ? ? A . n A 1 9 GLN 9 8 ? ? ? A . n A 1 10 TYR 10 9 ? ? ? A . n A 1 11 GLN 11 10 ? ? ? A . n A 1 12 HIS 12 11 ? ? ? A . n A 1 13 ARG 13 12 ? ? ? A . n A 1 14 PHE 14 13 ? ? ? A . n A 1 15 SER 15 14 ? ? ? A . n A 1 16 GLN 16 15 ? ? ? A . n A 1 17 ALA 17 16 ? ? ? A . n A 1 18 ILE 18 17 ? ? ? A . n A 1 19 ARG 19 18 ? ? ? A . n A 1 20 GLY 20 19 ? ? ? A . n A 1 21 GLY 21 20 ? ? ? A . n A 1 22 GLU 22 21 ? ? ? A . n A 1 23 ALA 23 22 ? ? ? A . n A 1 24 ALA 24 23 ? ? ? A . n A 1 25 ASP 25 24 ? ? ? A . n A 1 26 GLY 26 25 ? ? ? A . n A 1 27 LEU 27 26 ? ? ? A . n A 1 28 PRO 28 27 ? ? ? A . n A 1 29 GLN 29 28 ? ? ? A . n A 1 30 ASP 30 29 ? ? ? A . n A 1 31 ARG 31 30 ? ? ? A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 ASN 33 32 32 ASN ASN A . n A 1 34 VAL 34 33 33 VAL VAL A . n A 1 35 TYR 35 34 34 TYR TYR A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 ARG 37 36 36 ARG ARG A . n A 1 38 LEU 38 37 37 LEU LEU A . n A 1 39 ILE 39 38 38 ILE ILE A . n A 1 40 ARG 40 39 39 ARG ARG A . n A 1 41 ASN 41 40 40 ASN ASN A . n A 1 42 ASN 42 41 41 ASN ASN A . n A 1 43 ILE 43 42 42 ILE ILE A . n A 1 44 HIS 44 43 43 HIS HIS A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 PHE 46 45 45 PHE PHE A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 ARG 49 48 48 ARG ARG A . n A 1 50 CYS 50 49 49 CYS CYS A . n A 1 51 TYR 51 50 50 TYR TYR A . n A 1 52 THR 52 51 51 THR THR A . n A 1 53 GLU 53 52 52 GLU GLU A . n A 1 54 THR 54 53 53 THR THR A . n A 1 55 ARG 55 54 54 ARG ARG A . n A 1 56 GLN 56 55 55 GLN GLN A . n A 1 57 TYR 57 56 56 TYR TYR A . n A 1 58 PHE 58 57 57 PHE PHE A . n A 1 59 ASP 59 58 58 ASP ASP A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 TRP 63 62 62 TRP TRP A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 LYS 67 66 66 LYS LYS A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 GLY 69 68 68 GLY GLY A . n A 1 70 PHE 70 69 69 PHE PHE A . n A 1 71 VAL 71 70 70 VAL VAL A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 ALA 74 73 73 ALA ALA A . n A 1 75 ARG 75 74 74 ARG ARG A . n A 1 76 ALA 76 75 75 ALA ALA A . n A 1 77 GLN 77 76 76 GLN GLN A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 TYR 80 79 79 TYR TYR A . n A 1 81 PHE 81 80 80 PHE PHE A . n A 1 82 GLN 82 81 81 GLN GLN A . n A 1 83 GLU 83 82 82 GLU GLU A . n A 1 84 ILE 84 83 83 ILE ILE A . n A 1 85 PRO 85 84 84 PRO PRO A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 LEU 89 88 88 LEU LEU A . n A 1 90 GLN 90 89 89 GLN GLN A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 CYS 92 91 91 CYS CYS A . n A 1 93 GLN 93 92 92 GLN GLN A . n A 1 94 SER 94 93 93 SER SER A . n A 1 95 LEU 95 94 94 LEU LEU A . n A 1 96 PRO 96 95 95 PRO PRO A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 SER 98 97 97 SER SER A . n A 1 99 ASP 99 98 98 ASP ASP A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 ALA 103 102 102 ALA ALA A . n A 1 104 LEU 104 103 103 LEU LEU A . n A 1 105 MSE 105 104 104 MSE MSE A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 PHE 107 106 106 PHE PHE A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 TYR 109 108 108 TYR TYR A . n A 1 110 THR 110 109 109 THR THR A . n A 1 111 GLN 111 110 110 GLN GLN A . n A 1 112 LEU 112 111 111 LEU LEU A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 ALA 114 113 113 ALA ALA A . n A 1 115 GLU 115 114 114 GLU GLU A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 ALA 117 116 116 ALA ALA A . n A 1 118 GLN 118 117 117 GLN GLN A . n A 1 119 ILE 119 118 118 ILE ILE A . n A 1 120 PRO 120 119 119 PRO PRO A . n A 1 121 ASP 121 120 120 ASP ASP A . n A 1 122 ILE 122 121 121 ILE ILE A . n A 1 123 PRO 123 122 122 PRO PRO A . n A 1 124 ASP 124 123 123 ASP ASP A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 HIS 126 125 125 HIS HIS A . n A 1 127 TYR 127 126 126 TYR TYR A . n A 1 128 SER 128 127 127 SER SER A . n A 1 129 ASN 129 128 128 ASN ASN A . n A 1 130 ASP 130 129 129 ASP ASP A . n A 1 131 SER 131 130 130 SER SER A . n A 1 132 LYS 132 131 131 LYS LYS A . n A 1 133 TYR 133 132 132 TYR TYR A . n A 1 134 THR 134 133 133 THR THR A . n A 1 135 PRO 135 134 134 PRO PRO A . n A 1 136 SER 136 135 135 SER SER A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 ALA 138 137 137 ALA ALA A . n A 1 139 ALA 139 138 138 ALA ALA A . n A 1 140 PHE 140 139 139 PHE PHE A . n A 1 141 ILE 141 140 140 ILE ILE A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 GLN 143 142 142 GLN GLN A . n A 1 144 TYR 144 143 143 TYR TYR A . n A 1 145 ARG 145 144 144 ARG ARG A . n A 1 146 TYR 146 145 145 TYR TYR A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 VAL 148 147 147 VAL VAL A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 HIS 150 149 149 HIS HIS A . n A 1 151 ASP 151 150 150 ASP ASP A . n A 1 152 LEU 152 151 151 LEU LEU A . n A 1 153 GLN 153 152 152 GLN GLN A . n A 1 154 GLU 154 153 153 GLU GLU A . n A 1 155 ALA 155 154 154 ALA ALA A . n A 1 156 GLU 156 155 155 GLU GLU A . n A 1 157 THR 157 156 156 THR THR A . n A 1 158 ALA 158 157 157 ALA ALA A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 ILE 161 160 160 ILE ILE A . n A 1 162 TRP 162 161 161 TRP TRP A . n A 1 163 ARG 163 162 162 ARG ARG A . n A 1 164 ASN 164 163 163 ASN ASN A . n A 1 165 ALA 165 164 164 ALA ALA A . n A 1 166 GLU 166 165 165 GLU GLU A . n A 1 167 ASP 167 166 166 ASP ASP A . n A 1 168 ASP 168 167 167 ASP ASP A . n A 1 169 VAL 169 168 168 VAL VAL A . n A 1 170 MSE 170 169 169 MSE MSE A . n A 1 171 TYR 171 170 170 TYR TYR A . n A 1 172 GLN 172 171 171 GLN GLN A . n A 1 173 THR 173 172 172 THR THR A . n A 1 174 LEU 174 173 173 LEU LEU A . n A 1 175 ASP 175 174 174 ASP ASP A . n A 1 176 GLY 176 175 175 GLY GLY A . n A 1 177 PHE 177 176 176 PHE PHE A . n A 1 178 ASP 178 177 177 ASP ASP A . n A 1 179 MSE 179 178 178 MSE MSE A . n A 1 180 MSE 180 179 179 MSE MSE A . n A 1 181 LEU 181 180 180 LEU LEU A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 GLU 183 182 182 GLU GLU A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 MSE 185 184 184 MSE MSE A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 SER 187 186 186 SER SER A . n A 1 188 SER 188 187 187 SER SER A . n A 1 189 ALA 189 188 188 ALA ALA A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 SER 191 190 190 SER SER A . n A 1 192 PHE 192 191 191 PHE PHE A . n A 1 193 ASP 193 192 192 ASP ASP A . n A 1 194 THR 194 193 193 THR THR A . n A 1 195 LEU 195 194 194 LEU LEU A . n A 1 196 ALA 196 195 195 ALA ALA A . n A 1 197 GLN 197 196 196 GLN GLN A . n A 1 198 THR 198 197 197 THR THR A . n A 1 199 LEU 199 198 198 LEU LEU A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 GLU 201 200 200 GLU GLU A . n A 1 202 PHE 202 201 201 PHE PHE A . n A 1 203 MSE 203 202 202 MSE MSE A . n A 1 204 PRO 204 203 203 PRO PRO A . n A 1 205 LYS 205 204 204 LYS LYS A . n A 1 206 ALA 206 205 205 ALA ALA A . n A 1 207 ASP 207 206 206 ASP ASP A . n A 1 208 ASN 208 207 207 ASN ASN A . n A 1 209 TRP 209 208 208 TRP TRP A . n A 1 210 LYS 210 209 209 LYS LYS A . n A 1 211 ASN 211 210 210 ASN ASN A . n A 1 212 ILE 212 211 211 ILE ILE A . n A 1 213 LEU 213 212 212 LEU LEU A . n A 1 214 LEU 214 213 213 LEU LEU A . n A 1 215 GLY 215 214 214 GLY GLY A . n A 1 216 LYS 216 215 215 LYS LYS A . n A 1 217 TRP 217 216 216 TRP TRP A . n A 1 218 SER 218 217 217 SER SER A . n A 1 219 GLY 219 218 218 GLY GLY A . n A 1 220 TRP 220 219 219 TRP TRP A . n A 1 221 ILE 221 220 220 ILE ILE A . n A 1 222 GLU 222 221 221 GLU GLU A . n A 1 223 GLN 223 222 222 GLN GLN A . n A 1 224 ARG 224 223 223 ARG ARG A . n A 1 225 ILE 225 224 224 ILE ILE A . n A 1 226 ILE 226 225 225 ILE ILE A . n A 1 227 ILE 227 226 226 ILE ILE A . n A 1 228 PRO 228 227 227 PRO PRO A . n A 1 229 SER 229 228 228 SER SER A . n A 1 230 LEU 230 229 229 LEU LEU A . n A 1 231 SER 231 230 230 SER SER A . n A 1 232 ALA 232 231 ? ? ? A . n A 1 233 ILE 233 232 ? ? ? A . n A 1 234 SER 234 233 ? ? ? A . n A 1 235 GLU 235 234 ? ? ? A . n A 1 236 ASN 236 235 ? ? ? A . n A 1 237 MSE 237 236 ? ? ? A . n A 1 238 GLU 238 237 ? ? ? A . n A 1 239 GLY 239 238 ? ? ? A . n A 1 240 ASN 240 239 ? ? ? A . n A 1 241 SER 241 240 ? ? ? A . n A 1 242 PRO 242 241 ? ? ? A . n A 1 243 SER 243 242 ? ? ? A . n A 1 244 GLN 244 243 ? ? ? A . n A 1 245 ASN 245 244 ? ? ? A . n A 1 246 HIS 246 245 ? ? ? A . n A 1 247 LEU 247 246 ? ? ? A . n A 1 248 SER 248 247 ? ? ? A . n A 1 249 ALA 249 248 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 249 1 CL CL A . C 2 CL 1 250 2 CL CL A . D 3 IMD 1 251 3 IMD IMD A . E 4 HOH 1 252 4 HOH HOH A . E 4 HOH 2 253 5 HOH HOH A . E 4 HOH 3 254 6 HOH HOH A . E 4 HOH 4 255 7 HOH HOH A . E 4 HOH 5 256 8 HOH HOH A . E 4 HOH 6 257 9 HOH HOH A . E 4 HOH 7 258 10 HOH HOH A . E 4 HOH 8 259 11 HOH HOH A . E 4 HOH 9 260 12 HOH HOH A . E 4 HOH 10 261 13 HOH HOH A . E 4 HOH 11 262 14 HOH HOH A . E 4 HOH 12 263 15 HOH HOH A . E 4 HOH 13 264 16 HOH HOH A . E 4 HOH 14 265 17 HOH HOH A . E 4 HOH 15 266 18 HOH HOH A . E 4 HOH 16 267 19 HOH HOH A . E 4 HOH 17 268 20 HOH HOH A . E 4 HOH 18 269 21 HOH HOH A . E 4 HOH 19 270 22 HOH HOH A . E 4 HOH 20 271 23 HOH HOH A . E 4 HOH 21 272 24 HOH HOH A . E 4 HOH 22 273 25 HOH HOH A . E 4 HOH 23 274 26 HOH HOH A . E 4 HOH 24 275 27 HOH HOH A . E 4 HOH 25 276 28 HOH HOH A . E 4 HOH 26 277 29 HOH HOH A . E 4 HOH 27 278 30 HOH HOH A . E 4 HOH 28 279 31 HOH HOH A . E 4 HOH 29 280 32 HOH HOH A . E 4 HOH 30 281 33 HOH HOH A . E 4 HOH 31 282 34 HOH HOH A . E 4 HOH 32 283 35 HOH HOH A . E 4 HOH 33 284 36 HOH HOH A . E 4 HOH 34 285 37 HOH HOH A . E 4 HOH 35 286 38 HOH HOH A . E 4 HOH 36 287 39 HOH HOH A . E 4 HOH 37 288 40 HOH HOH A . E 4 HOH 38 289 41 HOH HOH A . E 4 HOH 39 290 42 HOH HOH A . E 4 HOH 40 291 43 HOH HOH A . E 4 HOH 41 292 44 HOH HOH A . E 4 HOH 42 293 45 HOH HOH A . E 4 HOH 43 294 46 HOH HOH A . E 4 HOH 44 295 47 HOH HOH A . E 4 HOH 45 296 48 HOH HOH A . E 4 HOH 46 297 49 HOH HOH A . E 4 HOH 47 298 50 HOH HOH A . E 4 HOH 48 299 51 HOH HOH A . E 4 HOH 49 300 52 HOH HOH A . E 4 HOH 50 301 53 HOH HOH A . E 4 HOH 51 302 54 HOH HOH A . E 4 HOH 52 303 55 HOH HOH A . E 4 HOH 53 304 56 HOH HOH A . E 4 HOH 54 305 57 HOH HOH A . E 4 HOH 55 306 58 HOH HOH A . E 4 HOH 56 307 59 HOH HOH A . E 4 HOH 57 308 60 HOH HOH A . E 4 HOH 58 309 61 HOH HOH A . E 4 HOH 59 310 62 HOH HOH A . E 4 HOH 60 311 63 HOH HOH A . E 4 HOH 61 312 64 HOH HOH A . E 4 HOH 62 313 65 HOH HOH A . E 4 HOH 63 314 66 HOH HOH A . E 4 HOH 64 315 67 HOH HOH A . E 4 HOH 65 316 68 HOH HOH A . E 4 HOH 66 317 69 HOH HOH A . E 4 HOH 67 318 70 HOH HOH A . E 4 HOH 68 319 71 HOH HOH A . E 4 HOH 69 320 72 HOH HOH A . E 4 HOH 70 321 73 HOH HOH A . E 4 HOH 71 322 74 HOH HOH A . E 4 HOH 72 323 75 HOH HOH A . E 4 HOH 73 324 76 HOH HOH A . E 4 HOH 74 325 77 HOH HOH A . E 4 HOH 75 326 78 HOH HOH A . E 4 HOH 76 327 79 HOH HOH A . E 4 HOH 77 328 80 HOH HOH A . E 4 HOH 78 329 81 HOH HOH A . E 4 HOH 79 330 82 HOH HOH A . E 4 HOH 80 331 83 HOH HOH A . E 4 HOH 81 332 84 HOH HOH A . E 4 HOH 82 333 85 HOH HOH A . E 4 HOH 83 334 86 HOH HOH A . E 4 HOH 84 335 87 HOH HOH A . E 4 HOH 85 336 88 HOH HOH A . E 4 HOH 86 337 89 HOH HOH A . E 4 HOH 87 338 90 HOH HOH A . E 4 HOH 88 339 91 HOH HOH A . E 4 HOH 89 340 92 HOH HOH A . E 4 HOH 90 341 93 HOH HOH A . E 4 HOH 91 342 94 HOH HOH A . E 4 HOH 92 343 95 HOH HOH A . E 4 HOH 93 344 96 HOH HOH A . E 4 HOH 94 345 97 HOH HOH A . E 4 HOH 95 346 98 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 105 A MSE 104 ? MET SELENOMETHIONINE 2 A MSE 170 A MSE 169 ? MET SELENOMETHIONINE 3 A MSE 179 A MSE 178 ? MET SELENOMETHIONINE 4 A MSE 180 A MSE 179 ? MET SELENOMETHIONINE 5 A MSE 185 A MSE 184 ? MET SELENOMETHIONINE 6 A MSE 203 A MSE 202 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2810 ? 1 MORE -62 ? 1 'SSA (A^2)' 21630 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -37.5904748217 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 77.7596319672 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -9.3437 _pdbx_refine_tls.origin_y 7.9975 _pdbx_refine_tls.origin_z 20.7420 _pdbx_refine_tls.T[1][1] -0.0590 _pdbx_refine_tls.T[2][2] -0.1308 _pdbx_refine_tls.T[3][3] -0.0578 _pdbx_refine_tls.T[1][2] 0.0324 _pdbx_refine_tls.T[1][3] -0.0092 _pdbx_refine_tls.T[2][3] 0.0007 _pdbx_refine_tls.L[1][1] 3.4483 _pdbx_refine_tls.L[2][2] 0.4741 _pdbx_refine_tls.L[3][3] 2.1115 _pdbx_refine_tls.L[1][2] 1.1081 _pdbx_refine_tls.L[1][3] -1.7031 _pdbx_refine_tls.L[2][3] -0.6458 _pdbx_refine_tls.S[1][1] 0.1603 _pdbx_refine_tls.S[2][2] 0.0184 _pdbx_refine_tls.S[3][3] -0.1787 _pdbx_refine_tls.S[1][2] 0.1961 _pdbx_refine_tls.S[1][3] 0.0827 _pdbx_refine_tls.S[2][3] 0.0412 _pdbx_refine_tls.S[2][1] 0.0924 _pdbx_refine_tls.S[3][1] -0.0377 _pdbx_refine_tls.S[3][2] 0.1443 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 32 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 230 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 31 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 229 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3DEE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DNA SEQUENCING OF THE CLONED CONSTRUCT SHOWS A LEUCINE AT POSITION 94 INSTEAD OF A PROLINE. THE LEUCINE AT POSITION 94 IS SUPPORTED BY THE ELECTRON DENSITY. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 50 ? ? -113.73 52.29 2 1 HIS A 149 ? ? -123.80 -88.44 3 1 ASP A 150 ? ? -145.68 35.11 4 1 ALA A 154 ? ? -170.20 121.98 5 1 ALA A 188 ? ? -39.93 137.98 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 36 ? CZ ? A ARG 37 CZ 2 1 Y 1 A ARG 36 ? NH1 ? A ARG 37 NH1 3 1 Y 1 A ARG 36 ? NH2 ? A ARG 37 NH2 4 1 Y 1 A ARG 54 ? CB ? A ARG 55 CB 5 1 Y 1 A ARG 54 ? CG ? A ARG 55 CG 6 1 Y 1 A ARG 54 ? CD ? A ARG 55 CD 7 1 Y 1 A ARG 54 ? NE ? A ARG 55 NE 8 1 Y 1 A ARG 54 ? CZ ? A ARG 55 CZ 9 1 Y 1 A ARG 54 ? NH1 ? A ARG 55 NH1 10 1 Y 1 A ARG 54 ? NH2 ? A ARG 55 NH2 11 1 Y 1 A LYS 60 ? CD ? A LYS 61 CD 12 1 Y 1 A LYS 60 ? CE ? A LYS 61 CE 13 1 Y 1 A LYS 60 ? NZ ? A LYS 61 NZ 14 1 Y 1 A ARG 71 ? NE ? A ARG 72 NE 15 1 Y 1 A ARG 71 ? CZ ? A ARG 72 CZ 16 1 Y 1 A ARG 71 ? NH1 ? A ARG 72 NH1 17 1 Y 1 A ARG 71 ? NH2 ? A ARG 72 NH2 18 1 Y 1 A GLN 117 ? CD ? A GLN 118 CD 19 1 Y 1 A GLN 117 ? OE1 ? A GLN 118 OE1 20 1 Y 1 A GLN 117 ? NE2 ? A GLN 118 NE2 21 1 Y 1 A ASP 120 ? CG ? A ASP 121 CG 22 1 Y 1 A ASP 120 ? OD1 ? A ASP 121 OD1 23 1 Y 1 A ASP 120 ? OD2 ? A ASP 121 OD2 24 1 Y 1 A LYS 204 ? CG ? A LYS 205 CG 25 1 Y 1 A LYS 204 ? CD ? A LYS 205 CD 26 1 Y 1 A LYS 204 ? CE ? A LYS 205 CE 27 1 Y 1 A LYS 204 ? NZ ? A LYS 205 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MET 1 ? A MET 2 3 1 Y 1 A GLN 2 ? A GLN 3 4 1 Y 1 A PRO 3 ? A PRO 4 5 1 Y 1 A GLU 4 ? A GLU 5 6 1 Y 1 A THR 5 ? A THR 6 7 1 Y 1 A SER 6 ? A SER 7 8 1 Y 1 A ALA 7 ? A ALA 8 9 1 Y 1 A GLN 8 ? A GLN 9 10 1 Y 1 A TYR 9 ? A TYR 10 11 1 Y 1 A GLN 10 ? A GLN 11 12 1 Y 1 A HIS 11 ? A HIS 12 13 1 Y 1 A ARG 12 ? A ARG 13 14 1 Y 1 A PHE 13 ? A PHE 14 15 1 Y 1 A SER 14 ? A SER 15 16 1 Y 1 A GLN 15 ? A GLN 16 17 1 Y 1 A ALA 16 ? A ALA 17 18 1 Y 1 A ILE 17 ? A ILE 18 19 1 Y 1 A ARG 18 ? A ARG 19 20 1 Y 1 A GLY 19 ? A GLY 20 21 1 Y 1 A GLY 20 ? A GLY 21 22 1 Y 1 A GLU 21 ? A GLU 22 23 1 Y 1 A ALA 22 ? A ALA 23 24 1 Y 1 A ALA 23 ? A ALA 24 25 1 Y 1 A ASP 24 ? A ASP 25 26 1 Y 1 A GLY 25 ? A GLY 26 27 1 Y 1 A LEU 26 ? A LEU 27 28 1 Y 1 A PRO 27 ? A PRO 28 29 1 Y 1 A GLN 28 ? A GLN 29 30 1 Y 1 A ASP 29 ? A ASP 30 31 1 Y 1 A ARG 30 ? A ARG 31 32 1 Y 1 A ALA 231 ? A ALA 232 33 1 Y 1 A ILE 232 ? A ILE 233 34 1 Y 1 A SER 233 ? A SER 234 35 1 Y 1 A GLU 234 ? A GLU 235 36 1 Y 1 A ASN 235 ? A ASN 236 37 1 Y 1 A MSE 236 ? A MSE 237 38 1 Y 1 A GLU 237 ? A GLU 238 39 1 Y 1 A GLY 238 ? A GLY 239 40 1 Y 1 A ASN 239 ? A ASN 240 41 1 Y 1 A SER 240 ? A SER 241 42 1 Y 1 A PRO 241 ? A PRO 242 43 1 Y 1 A SER 242 ? A SER 243 44 1 Y 1 A GLN 243 ? A GLN 244 45 1 Y 1 A ASN 244 ? A ASN 245 46 1 Y 1 A HIS 245 ? A HIS 246 47 1 Y 1 A LEU 246 ? A LEU 247 48 1 Y 1 A SER 247 ? A SER 248 49 1 Y 1 A ALA 248 ? A ALA 249 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 IMIDAZOLE IMD 4 water HOH #