HEADER HYDROLASE 10-JUN-08 3DEM TITLE CUB1-EGF-CUB2 DOMAIN OF HUMAN MASP-1/3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT FACTOR MASP-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CUB1-EGF-CUB2 DOMAIN; COMPND 5 SYNONYM: MASP-1/3, MANNAN-BINDING LECTIN SERINE PEPTIDASE 1 (C4/C2 COMPND 6 ACTIVATING COMPONENT OF RA-REACTIVE FACTOR), ISOFORM CRA_D, MANNAN- COMPND 7 BINDING LECTIN SERINE PEPTIDASE 1, C4/C2 ACTIVATING COMPONENT OF RA- COMPND 8 REACTIVE FACTOR; COMPND 9 EC: 3.4.21.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MASP1; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE CELLS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 8 OTHER_DETAILS: BACULOVIRUS/INSECT CELL SYSTEM KEYWDS COMPLEMENT SYSTEM, INNATE IMMUNITY, CALCIUM BINDING SITES, COMPLEMENT KEYWDS 2 PATHWAY, EGF-LIKE DOMAIN, GLYCOPROTEIN, HYDROLASE, HYDROXYLATION, KEYWDS 3 IMMUNE RESPONSE, PROTEASE, SERINE PROTEASE, SUSHI, LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR C.GABORIAUD REVDAT 6 01-NOV-23 3DEM 1 HETSYN REVDAT 5 29-JUL-20 3DEM 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 20-MAY-15 3DEM 1 JRNL REVDAT 3 13-JUL-11 3DEM 1 VERSN REVDAT 2 24-FEB-09 3DEM 1 VERSN REVDAT 1 01-JUL-08 3DEM 0 JRNL AUTH F.TEILLET,C.GABORIAUD,M.LACROIX,L.MARTIN,G.J.ARLAUD, JRNL AUTH 2 N.M.THIELENS JRNL TITL CRYSTAL STRUCTURE OF THE CUB1-EGF-CUB2 DOMAIN OF HUMAN JRNL TITL 2 MASP-1/3 AND IDENTIFICATION OF ITS INTERACTION SITES WITH JRNL TITL 3 MANNAN-BINDING LECTIN AND FICOLINS JRNL REF J.BIOL.CHEM. V. 283 25715 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18596036 JRNL DOI 10.1074/JBC.M803551200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2055 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4289 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 341 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : 1.23000 REMARK 3 B13 (A**2) : -1.61000 REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.005 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 0.870 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USE TLS REFINEMENT REMARK 4 REMARK 4 3DEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 14.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : 0.38800 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1NT0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% PEG 8000, 3% GLYCEROL, 0.1M REMARK 280 HEPES, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.29350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.29350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.34600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.11600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.34600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.11600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.29350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.34600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.11600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.29350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.34600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.11600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 ARG A 127 REMARK 465 GLU A 128 REMARK 465 ASP A 129 REMARK 465 GLU A 130 REMARK 465 GLU A 131 REMARK 465 HIS B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 GLU B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 THR B 79 REMARK 465 GLU B 80 REMARK 465 ARG B 127 REMARK 465 GLU B 128 REMARK 465 ASP B 129 REMARK 465 GLU B 130 REMARK 465 GLU B 131 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 159 C2 NAG A 1001 1.96 REMARK 500 NH1 ARG A 38 OE1 GLU A 126 2.05 REMARK 500 O HOH B 7055 O HOH B 7147 2.14 REMARK 500 O HOH B 7062 O HOH B 7171 2.16 REMARK 500 O HOH B 7074 O HOH B 7159 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 56 -87.46 -83.33 REMARK 500 THR A 63 -164.68 -104.96 REMARK 500 ASP A 65 12.64 -148.89 REMARK 500 THR A 76 -71.39 -54.50 REMARK 500 THR A 79 47.55 73.54 REMARK 500 ASP A 102 -164.39 -77.32 REMARK 500 ASN A 105 54.50 -114.58 REMARK 500 HIS A 136 -84.34 -108.40 REMARK 500 ARG A 160 -52.18 -139.73 REMARK 500 LEU A 170 110.98 -166.36 REMARK 500 ASP A 211 -150.19 56.43 REMARK 500 CYS A 223 65.56 38.91 REMARK 500 TYR A 225 -72.20 -111.48 REMARK 500 PRO A 234 31.57 -87.37 REMARK 500 TYR B 56 -85.96 -85.78 REMARK 500 THR B 63 -165.10 -105.02 REMARK 500 ASP B 65 13.31 -148.54 REMARK 500 THR B 76 -82.29 -54.75 REMARK 500 THR B 77 61.91 -119.46 REMARK 500 ASP B 102 -154.78 -81.13 REMARK 500 ASN B 105 60.40 -112.12 REMARK 500 HIS B 136 -84.90 -109.01 REMARK 500 ARG B 160 -50.25 -137.30 REMARK 500 LEU B 170 112.88 -165.27 REMARK 500 ASP B 211 -159.51 68.34 REMARK 500 TYR B 225 -73.35 -110.07 REMARK 500 PRO B 234 34.17 -88.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 49 OE1 REMARK 620 2 ASP A 57 OD1 88.2 REMARK 620 3 ASP A 57 OD2 80.0 51.2 REMARK 620 4 ASP A 102 OD1 106.4 71.0 121.9 REMARK 620 5 SER A 104 O 94.1 163.8 144.9 93.0 REMARK 620 6 HOH A8009 O 172.3 86.9 92.3 77.4 92.3 REMARK 620 7 HOH A8097 O 81.3 129.2 78.0 159.3 67.0 97.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A3001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD1 REMARK 620 2 ASP A 120 OD2 46.2 REMARK 620 3 VAL A 121 O 80.6 73.6 REMARK 620 4 GLU A 123 OE1 140.5 144.1 74.3 REMARK 620 5 ASN A 140 OD1 131.8 85.7 89.7 78.6 REMARK 620 6 TYR A 141 O 74.3 72.4 145.9 138.8 90.2 REMARK 620 7 GLY A 144 O 126.5 136.7 147.8 73.5 83.4 65.8 REMARK 620 8 HOH A8005 O 67.4 112.1 84.5 80.0 158.6 106.1 90.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A8001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE1 REMARK 620 2 ASP A 226 OD1 103.9 REMARK 620 3 ASP A 226 OD2 93.6 50.0 REMARK 620 4 ASP A 263 OD1 98.6 72.5 122.5 REMARK 620 5 SER A 265 O 90.3 148.0 158.9 77.2 REMARK 620 6 HOH A8002 O 91.3 125.0 77.0 157.1 82.2 REMARK 620 7 HOH A8021 O 172.1 84.0 92.0 83.0 82.5 84.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B6001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 49 OE1 REMARK 620 2 ASP B 57 OD2 80.7 REMARK 620 3 ASP B 102 OD1 92.9 103.8 REMARK 620 4 SER B 104 O 115.4 160.7 86.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B4001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD1 REMARK 620 2 VAL B 121 O 77.9 REMARK 620 3 GLU B 123 OE1 142.6 73.4 REMARK 620 4 ASN B 140 OD1 122.7 83.7 77.6 REMARK 620 5 TYR B 141 O 74.2 138.7 142.3 86.3 REMARK 620 6 GLY B 144 O 131.5 149.9 77.3 83.5 67.1 REMARK 620 7 HOH B7008 O 74.5 87.1 80.5 157.9 113.4 94.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B7001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 216 OE1 REMARK 620 2 ASP B 226 OD1 102.0 REMARK 620 3 ASP B 226 OD2 92.2 48.7 REMARK 620 4 ASP B 263 OD1 98.2 73.7 122.4 REMARK 620 5 SER B 265 O 88.5 155.0 154.7 82.5 REMARK 620 6 HOH B7016 O 94.4 122.6 76.4 156.7 78.4 REMARK 620 7 HOH B7020 O 171.5 85.2 89.2 88.2 86.8 77.7 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NZI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CUB1-EGF INTERACTION DOMAIN OF COMPLEMENT REMARK 900 PROTEASE C1S REMARK 900 RELATED ID: 1NT0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CUB1-EGF-CUB2 REGION OF MASP2 DBREF 3DEM A 1 278 UNP Q96RS4 Q96RS4_HUMAN 20 297 DBREF 3DEM B 1 278 UNP Q96RS4 Q96RS4_HUMAN 20 297 SEQRES 1 A 278 HIS THR VAL GLU LEU ASN ASN MET PHE GLY GLN ILE GLN SEQRES 2 A 278 SER PRO GLY TYR PRO ASP SER TYR PRO SER ASP SER GLU SEQRES 3 A 278 VAL THR TRP ASN ILE THR VAL PRO ASP GLY PHE ARG ILE SEQRES 4 A 278 LYS LEU TYR PHE MET HIS PHE ASN LEU GLU SER SER TYR SEQRES 5 A 278 LEU CYS GLU TYR ASP TYR VAL LYS VAL GLU THR GLU ASP SEQRES 6 A 278 GLN VAL LEU ALA THR PHE CYS GLY ARG GLU THR THR ASP SEQRES 7 A 278 THR GLU GLN THR PRO GLY GLN GLU VAL VAL LEU SER PRO SEQRES 8 A 278 GLY SER PHE MET SER ILE THR PHE ARG SER ASP PHE SER SEQRES 9 A 278 ASN GLU GLU ARG PHE THR GLY PHE ASP ALA HIS TYR MET SEQRES 10 A 278 ALA VAL ASP VAL ASP GLU CYS LYS GLU ARG GLU ASP GLU SEQRES 11 A 278 GLU LEU SER CYS ASP HIS TYR CYS HIS ASN TYR ILE GLY SEQRES 12 A 278 GLY TYR TYR CYS SER CYS ARG PHE GLY TYR ILE LEU HIS SEQRES 13 A 278 THR ASP ASN ARG THR CYS ARG VAL GLU CYS SER ASP ASN SEQRES 14 A 278 LEU PHE THR GLN ARG THR GLY VAL ILE THR SER PRO ASP SEQRES 15 A 278 PHE PRO ASN PRO TYR PRO LYS SER SER GLU CYS LEU TYR SEQRES 16 A 278 THR ILE GLU LEU GLU GLU GLY PHE MET VAL ASN LEU GLN SEQRES 17 A 278 PHE GLU ASP ILE PHE ASP ILE GLU ASP HIS PRO GLU VAL SEQRES 18 A 278 PRO CYS PRO TYR ASP TYR ILE LYS ILE LYS VAL GLY PRO SEQRES 19 A 278 LYS VAL LEU GLY PRO PHE CYS GLY GLU LYS ALA PRO GLU SEQRES 20 A 278 PRO ILE SER THR GLN SER HIS SER VAL LEU ILE LEU PHE SEQRES 21 A 278 HIS SER ASP ASN SER GLY GLU ASN ARG GLY TRP ARG LEU SEQRES 22 A 278 SER TYR ARG ALA ALA SEQRES 1 B 278 HIS THR VAL GLU LEU ASN ASN MET PHE GLY GLN ILE GLN SEQRES 2 B 278 SER PRO GLY TYR PRO ASP SER TYR PRO SER ASP SER GLU SEQRES 3 B 278 VAL THR TRP ASN ILE THR VAL PRO ASP GLY PHE ARG ILE SEQRES 4 B 278 LYS LEU TYR PHE MET HIS PHE ASN LEU GLU SER SER TYR SEQRES 5 B 278 LEU CYS GLU TYR ASP TYR VAL LYS VAL GLU THR GLU ASP SEQRES 6 B 278 GLN VAL LEU ALA THR PHE CYS GLY ARG GLU THR THR ASP SEQRES 7 B 278 THR GLU GLN THR PRO GLY GLN GLU VAL VAL LEU SER PRO SEQRES 8 B 278 GLY SER PHE MET SER ILE THR PHE ARG SER ASP PHE SER SEQRES 9 B 278 ASN GLU GLU ARG PHE THR GLY PHE ASP ALA HIS TYR MET SEQRES 10 B 278 ALA VAL ASP VAL ASP GLU CYS LYS GLU ARG GLU ASP GLU SEQRES 11 B 278 GLU LEU SER CYS ASP HIS TYR CYS HIS ASN TYR ILE GLY SEQRES 12 B 278 GLY TYR TYR CYS SER CYS ARG PHE GLY TYR ILE LEU HIS SEQRES 13 B 278 THR ASP ASN ARG THR CYS ARG VAL GLU CYS SER ASP ASN SEQRES 14 B 278 LEU PHE THR GLN ARG THR GLY VAL ILE THR SER PRO ASP SEQRES 15 B 278 PHE PRO ASN PRO TYR PRO LYS SER SER GLU CYS LEU TYR SEQRES 16 B 278 THR ILE GLU LEU GLU GLU GLY PHE MET VAL ASN LEU GLN SEQRES 17 B 278 PHE GLU ASP ILE PHE ASP ILE GLU ASP HIS PRO GLU VAL SEQRES 18 B 278 PRO CYS PRO TYR ASP TYR ILE LYS ILE LYS VAL GLY PRO SEQRES 19 B 278 LYS VAL LEU GLY PRO PHE CYS GLY GLU LYS ALA PRO GLU SEQRES 20 B 278 PRO ILE SER THR GLN SER HIS SER VAL LEU ILE LEU PHE SEQRES 21 B 278 HIS SER ASP ASN SER GLY GLU ASN ARG GLY TRP ARG LEU SEQRES 22 B 278 SER TYR ARG ALA ALA MODRES 3DEM ASN A 159 ASN GLYCOSYLATION SITE HET NAG A1001 14 HET CA A3001 1 HET CA A5001 1 HET CA A8001 1 HET CA B4001 1 HET CA B6001 1 HET CA B7001 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 CA 6(CA 2+) FORMUL 10 HOH *341(H2 O) HELIX 1 1 SER A 51 GLU A 55 5 5 HELIX 2 2 SER B 51 GLU B 55 5 5 SHEET 1 A 4 PHE A 9 GLN A 13 0 SHEET 2 A 4 GLY A 111 ASP A 120 -1 O ALA A 114 N ILE A 12 SHEET 3 A 4 PHE A 37 ASN A 47 -1 N ASN A 47 O GLY A 111 SHEET 4 A 4 VAL A 88 LEU A 89 -1 O VAL A 88 N LEU A 41 SHEET 1 B 4 SER A 25 THR A 32 0 SHEET 2 B 4 PHE A 94 SER A 101 -1 O MET A 95 N ILE A 31 SHEET 3 B 4 TYR A 58 GLU A 62 -1 N GLU A 62 O SER A 96 SHEET 4 B 4 VAL A 67 PHE A 71 -1 O ALA A 69 N VAL A 61 SHEET 1 C 2 TYR A 137 TYR A 141 0 SHEET 2 C 2 GLY A 144 SER A 148 -1 O TYR A 146 N HIS A 139 SHEET 1 D 2 ILE A 154 LEU A 155 0 SHEET 2 D 2 CYS A 162 ARG A 163 -1 O ARG A 163 N ILE A 154 SHEET 1 E 4 THR A 175 THR A 179 0 SHEET 2 E 4 ARG A 272 ALA A 278 -1 O LEU A 273 N ILE A 178 SHEET 3 E 4 MET A 204 PHE A 209 -1 N MET A 204 O ALA A 278 SHEET 4 E 4 ILE A 249 SER A 250 -1 O ILE A 249 N LEU A 207 SHEET 1 F 4 GLU A 192 GLU A 198 0 SHEET 2 F 4 SER A 255 HIS A 261 -1 O ILE A 258 N TYR A 195 SHEET 3 F 4 TYR A 227 VAL A 232 -1 N LYS A 229 O LEU A 259 SHEET 4 F 4 LYS A 235 PHE A 240 -1 O LEU A 237 N ILE A 230 SHEET 1 G 4 PHE B 9 GLN B 13 0 SHEET 2 G 4 GLY B 111 ASP B 120 -1 O ALA B 114 N ILE B 12 SHEET 3 G 4 PHE B 37 ASN B 47 -1 N ASN B 47 O GLY B 111 SHEET 4 G 4 VAL B 88 LEU B 89 -1 O VAL B 88 N LEU B 41 SHEET 1 H 4 SER B 25 THR B 32 0 SHEET 2 H 4 PHE B 94 SER B 101 -1 O MET B 95 N ILE B 31 SHEET 3 H 4 TYR B 58 GLU B 62 -1 N GLU B 62 O SER B 96 SHEET 4 H 4 VAL B 67 PHE B 71 -1 O ALA B 69 N VAL B 61 SHEET 1 I 2 TYR B 137 TYR B 141 0 SHEET 2 I 2 GLY B 144 SER B 148 -1 O TYR B 146 N HIS B 139 SHEET 1 J 2 ILE B 154 LEU B 155 0 SHEET 2 J 2 CYS B 162 ARG B 163 -1 O ARG B 163 N ILE B 154 SHEET 1 K 4 THR B 175 THR B 179 0 SHEET 2 K 4 GLY B 270 ALA B 277 -1 O LEU B 273 N ILE B 178 SHEET 3 K 4 VAL B 205 ASP B 214 -1 N ASP B 214 O GLY B 270 SHEET 4 K 4 ILE B 249 SER B 250 -1 O ILE B 249 N LEU B 207 SHEET 1 L 4 GLU B 192 GLU B 198 0 SHEET 2 L 4 SER B 255 HIS B 261 -1 O ILE B 258 N TYR B 195 SHEET 3 L 4 TYR B 227 VAL B 232 -1 N LYS B 229 O LEU B 259 SHEET 4 L 4 LYS B 235 PHE B 240 -1 O LEU B 237 N ILE B 230 SSBOND 1 CYS A 54 CYS A 72 1555 1555 2.07 SSBOND 2 CYS A 124 CYS A 138 1555 1555 2.05 SSBOND 3 CYS A 134 CYS A 147 1555 1555 2.04 SSBOND 4 CYS A 149 CYS A 162 1555 1555 2.04 SSBOND 5 CYS A 166 CYS A 193 1555 1555 2.05 SSBOND 6 CYS A 223 CYS A 241 1555 1555 2.06 SSBOND 7 CYS B 54 CYS B 72 1555 1555 2.04 SSBOND 8 CYS B 124 CYS B 138 1555 1555 2.04 SSBOND 9 CYS B 134 CYS B 147 1555 1555 2.04 SSBOND 10 CYS B 149 CYS B 162 1555 1555 2.04 SSBOND 11 CYS B 166 CYS B 193 1555 1555 2.04 SSBOND 12 CYS B 223 CYS B 241 1555 1555 2.06 LINK ND2 ASN A 159 C1 NAG A1001 1555 1555 1.45 LINK OE1 GLU A 49 CA CA A5001 1555 1555 2.45 LINK OD1 ASP A 57 CA CA A5001 1555 1555 2.54 LINK OD2 ASP A 57 CA CA A5001 1555 1555 2.52 LINK OD1 ASP A 102 CA CA A5001 1555 1555 2.21 LINK O SER A 104 CA CA A5001 1555 1555 2.55 LINK OD1 ASP A 120 CA CA A3001 1555 1555 2.67 LINK OD2 ASP A 120 CA CA A3001 1555 1555 2.91 LINK O VAL A 121 CA CA A3001 1555 1555 2.27 LINK OE1 GLU A 123 CA CA A3001 1555 1555 2.62 LINK OD1 ASN A 140 CA CA A3001 1555 1555 2.24 LINK O TYR A 141 CA CA A3001 1555 1555 2.50 LINK O GLY A 144 CA CA A3001 1555 1555 2.61 LINK OE1 GLU A 216 CA CA A8001 1555 1555 2.25 LINK OD1 ASP A 226 CA CA A8001 1555 1555 2.77 LINK OD2 ASP A 226 CA CA A8001 1555 1555 2.33 LINK OD1 ASP A 263 CA CA A8001 1555 1555 2.42 LINK O SER A 265 CA CA A8001 1555 1555 2.28 LINK CA CA A3001 O HOH A8005 1555 1555 2.39 LINK CA CA A5001 O HOH A8009 1555 1555 2.59 LINK CA CA A5001 O HOH A8097 1555 1555 2.26 LINK CA CA A8001 O HOH A8002 1555 1555 2.40 LINK CA CA A8001 O HOH A8021 1555 1555 2.39 LINK OE1 GLU B 49 CA CA B6001 1555 1555 2.45 LINK OD2 ASP B 57 CA CA B6001 1555 1555 2.40 LINK OD1 ASP B 102 CA CA B6001 1555 1555 2.37 LINK O SER B 104 CA CA B6001 1555 1555 2.91 LINK OD1 ASP B 120 CA CA B4001 1555 1555 2.70 LINK O VAL B 121 CA CA B4001 1555 1555 2.41 LINK OE1 GLU B 123 CA CA B4001 1555 1555 2.53 LINK OD1 ASN B 140 CA CA B4001 1555 1555 2.37 LINK O TYR B 141 CA CA B4001 1555 1555 2.53 LINK O GLY B 144 CA CA B4001 1555 1555 2.45 LINK OE1 GLU B 216 CA CA B7001 1555 1555 2.38 LINK OD1 ASP B 226 CA CA B7001 1555 1555 2.78 LINK OD2 ASP B 226 CA CA B7001 1555 1555 2.45 LINK OD1 ASP B 263 CA CA B7001 1555 1555 2.27 LINK O SER B 265 CA CA B7001 1555 1555 2.23 LINK CA CA B4001 O HOH B7008 1555 1555 2.35 LINK CA CA B7001 O HOH B7016 1555 1555 2.57 LINK CA CA B7001 O HOH B7020 1555 1555 2.27 CISPEP 1 TYR A 17 PRO A 18 0 2.74 CISPEP 2 PHE A 183 PRO A 184 0 -0.35 CISPEP 3 GLY A 238 PRO A 239 0 2.19 CISPEP 4 TYR B 17 PRO B 18 0 2.70 CISPEP 5 PHE B 183 PRO B 184 0 0.07 CISPEP 6 GLY B 238 PRO B 239 0 2.63 CRYST1 88.692 110.232 190.587 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011275 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005247 0.00000