HEADER HYDROLASE 12-JUN-08 3DFI TITLE THE CRYSTAL STRUCTURE OF ANTIMICROBIAL REAGENT A40926 PSEUDOAGLYCONE TITLE 2 DEACETYLASE DBV21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOAGLYCONE DEACETYLASE DBV21; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOPLANES TEICHOMYCETICUS; SOURCE 3 ORGANISM_TAXID: 1867; SOURCE 4 GENE: TCP14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS SINGLE ALPHA-BETA DOMAIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZOU,J.S.BRUNZELLE,S.K.NAIR REVDAT 6 21-FEB-24 3DFI 1 REMARK REVDAT 5 13-JUL-11 3DFI 1 VERSN REVDAT 4 24-FEB-09 3DFI 1 VERSN REVDAT 3 05-AUG-08 3DFI 1 SOURCE REVDAT 2 29-JUL-08 3DFI 1 TITLE REVDAT 1 22-JUL-08 3DFI 0 JRNL AUTH Y.ZOU,J.S.BRUNZELLE,S.K.NAIR JRNL TITL CRYSTAL STRUCTURES OF LIPOGLYCOPEPTIDE ANTIBIOTIC JRNL TITL 2 DEACETYLASES: IMPLICATIONS FOR THE BIOSYNTHESIS OF A40926 JRNL TITL 3 AND TEICOPLANIN. JRNL REF CHEM.BIOL. V. 15 533 2008 JRNL REFN ISSN 1074-5521 JRNL PMID 18559264 JRNL DOI 10.1016/J.CHEMBIOL.2008.05.009 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1313 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1864 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58000 REMARK 3 B22 (A**2) : -1.58000 REMARK 3 B33 (A**2) : 3.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1907 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2596 ; 1.384 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 6.068 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;35.485 ;22.826 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;16.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1493 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 807 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1275 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.273 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 0.699 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1924 ; 1.200 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 749 ; 1.662 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 672 ; 2.416 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0664 27.1941 -10.8718 REMARK 3 T TENSOR REMARK 3 T11: -0.2232 T22: -0.1121 REMARK 3 T33: -0.1860 T12: -0.0365 REMARK 3 T13: 0.0323 T23: -0.1775 REMARK 3 L TENSOR REMARK 3 L11: 5.2281 L22: 3.4539 REMARK 3 L33: 3.0514 L12: -1.0028 REMARK 3 L13: -2.2720 L23: 1.9657 REMARK 3 S TENSOR REMARK 3 S11: 0.1556 S12: -0.0678 S13: 0.1086 REMARK 3 S21: 0.2119 S22: 0.0855 S23: -0.1226 REMARK 3 S31: -0.1280 S32: 0.2704 S33: -0.2412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000047974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9704 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.94500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.47000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.97250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.47000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.91750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.47000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.47000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.97250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.47000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.47000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.91750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.94500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 369 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 ARG A 102 REMARK 465 SER A 103 REMARK 465 PRO A 104 REMARK 465 ASP A 105 REMARK 465 GLY A 106 REMARK 465 GLN A 107 REMARK 465 TRP A 108 REMARK 465 LEU A 109 REMARK 465 LEU A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 ASN A 113 REMARK 465 GLU A 114 REMARK 465 GLY A 115 REMARK 465 SER A 116 REMARK 465 MET A 117 REMARK 465 VAL A 118 REMARK 465 ARG A 119 REMARK 465 GLN A 120 REMARK 465 GLN A 121 REMARK 465 SER A 122 REMARK 465 PRO A 123 REMARK 465 ALA A 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 66 OG REMARK 470 ASN A 125 CG OD1 ND2 REMARK 470 ASP A 193 CG OD1 OD2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 ASN A 239 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 18 -30.42 149.31 REMARK 500 ALA A 154 34.36 73.37 REMARK 500 GLN A 192 -134.28 68.21 REMARK 500 ASP A 193 -54.42 133.07 REMARK 500 ASN A 237 -9.35 78.26 REMARK 500 ASN A 239 32.06 -96.59 REMARK 500 ALA A 252 83.10 -157.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 239 LEU A 240 -148.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 16 ND1 REMARK 620 2 HIS A 161 NE2 106.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DFF RELATED DB: PDB REMARK 900 RELATED ID: 3DFK RELATED DB: PDB REMARK 900 RELATED ID: 3DFM RELATED DB: PDB DBREF 3DFI A 1 270 UNP Q7WZ70 Q7WZ70_9ACTO 1 270 SEQRES 1 A 270 MET LEU GLN ASP ALA ASP ARG THR ARG ILE LEU ALA ILE SEQRES 2 A 270 SER PRO HIS LEU ASP ASP ALA VAL LEU SER VAL GLY ALA SEQRES 3 A 270 SER LEU ALA GLN ALA GLU GLN ASP GLY GLY LYS VAL THR SEQRES 4 A 270 VAL PHE THR VAL PHE ALA GLY SER ALA ALA PRO PRO TYR SEQRES 5 A 270 SER PRO ALA ALA GLU ARG PHE HIS ALA ARG TRP GLY LEU SEQRES 6 A 270 SER PRO THR GLU ASP ALA PRO LEU ARG ARG ARG ASN GLU SEQRES 7 A 270 ASP ILE ALA ALA LEU ASP GLN LEU GLY ALA GLY HIS ARG SEQRES 8 A 270 HIS GLY ARG PHE LEU ASP ALA ILE TYR ARG ARG SER PRO SEQRES 9 A 270 ASP GLY GLN TRP LEU LEU HIS HIS ASN GLU GLY SER MET SEQRES 10 A 270 VAL ARG GLN GLN SER PRO ALA ASN ASN HIS ASP LEU VAL SEQRES 11 A 270 ALA ALA ILE ARG GLU ASP ILE GLU SER MET ILE ALA GLU SEQRES 12 A 270 CYS ASP PRO THR LEU VAL LEU THR CYS VAL ALA ILE GLY SEQRES 13 A 270 LYS HIS PRO ASP HIS LYS ALA THR ARG ASP ALA THR LEU SEQRES 14 A 270 LEU ALA ALA ARG GLU ARG GLY ILE PRO LEU ARG LEU TRP SEQRES 15 A 270 GLN ASP LEU PRO TYR ALA ALA TYR SER GLN ASP LEU ALA SEQRES 16 A 270 GLU LEU PRO ASP GLY LEU ARG LEU GLY SER PRO GLU LEU SEQRES 17 A 270 SER PHE VAL ASP GLU GLU ALA ARG THR ARG LYS PHE GLN SEQRES 18 A 270 ALA MET LYS HIS TYR ALA THR GLN LEU SER VAL LEU ASP SEQRES 19 A 270 GLY PRO ASN LYS ASN LEU PHE ALA LYS LEU ASP GLU HIS SEQRES 20 A 270 ALA ARG ASN ALA ALA PRO ASP GLY GLY TYR ASN GLU THR SEQRES 21 A 270 THR TRP PRO VAL ILE ARG TYR ALA ALA GLU HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *94(H2 O) HELIX 1 1 ASP A 18 ASP A 34 1 17 HELIX 2 2 SER A 53 TRP A 63 1 11 HELIX 3 3 ASP A 70 LEU A 86 1 17 HELIX 4 4 ASP A 97 ARG A 101 5 5 HELIX 5 5 ASN A 125 ASP A 145 1 21 HELIX 6 6 HIS A 158 ARG A 175 1 18 HELIX 7 7 PRO A 186 SER A 191 1 6 HELIX 8 8 ASP A 212 LYS A 224 1 13 HELIX 9 9 TYR A 226 ASP A 234 1 9 HELIX 10 10 ASN A 239 ALA A 252 1 14 SHEET 1 A 7 GLY A 89 HIS A 92 0 SHEET 2 A 7 LYS A 37 THR A 42 1 N VAL A 38 O GLY A 89 SHEET 3 A 7 ARG A 9 SER A 14 1 N ILE A 10 O LYS A 37 SHEET 4 A 7 LEU A 148 CYS A 152 1 O LEU A 150 N ILE A 13 SHEET 5 A 7 LEU A 179 TRP A 182 1 O TRP A 182 N THR A 151 SHEET 6 A 7 ASN A 258 ARG A 266 -1 O TRP A 262 N LEU A 181 SHEET 7 A 7 LEU A 201 LEU A 203 -1 N ARG A 202 O ILE A 265 SHEET 1 B 7 GLY A 89 HIS A 92 0 SHEET 2 B 7 LYS A 37 THR A 42 1 N VAL A 38 O GLY A 89 SHEET 3 B 7 ARG A 9 SER A 14 1 N ILE A 10 O LYS A 37 SHEET 4 B 7 LEU A 148 CYS A 152 1 O LEU A 150 N ILE A 13 SHEET 5 B 7 LEU A 179 TRP A 182 1 O TRP A 182 N THR A 151 SHEET 6 B 7 ASN A 258 ARG A 266 -1 O TRP A 262 N LEU A 181 SHEET 7 B 7 GLU A 207 PHE A 210 -1 N SER A 209 O GLU A 259 LINK ND1 HIS A 16 ZN ZN A 300 1555 1555 2.17 LINK NE2 HIS A 161 ZN ZN A 300 1555 1555 2.18 CISPEP 1 PRO A 50 PRO A 51 0 7.74 CISPEP 2 LEU A 185 PRO A 186 0 3.03 SITE 1 AC1 4 HIS A 16 ASP A 19 HIS A 161 HOH A 356 CRYST1 62.940 62.940 159.890 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015888 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015888 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006254 0.00000