data_3DFV # _entry.id 3DFV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DFV NDB PD1149 RCSB RCSB047986 WWPDB D_1000047986 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3DFX _pdbx_database_related.details 'Opposite GATA DNA binding' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3DFV _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-12 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bates, D.L.' 1 'Kim, G.K.' 2 'Guo, L.' 3 'Chen, L.' 4 # _citation.id primary _citation.title ;Crystal structures of multiple GATA zinc fingers bound to DNA reveal new insights into DNA recognition and self-association by GATA. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 381 _citation.page_first 1292 _citation.page_last 1306 _citation.year 2008 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18621058 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2008.06.072 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bates, D.L.' 1 primary 'Chen, Y.' 2 primary 'Kim, G.' 3 primary 'Guo, L.' 4 primary 'Chen, L.' 5 # _cell.length_a 137.977 _cell.length_b 35.756 _cell.length_c 54.487 _cell.angle_alpha 90.000 _cell.angle_beta 113.250 _cell.angle_gamma 90.000 _cell.entry_id 3DFV _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.entry_id 3DFV _symmetry.Int_Tables_number 5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DTP*DTP*DCP*DTP*DGP*DAP*DTP*DAP*DAP*DGP*DAP*DCP*DTP*DTP*DAP*DTP*DCP*DTP*DGP*DC)-3') ; 6098.963 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*DAP*DAP*DGP*DCP*DAP*DGP*DAP*DTP*DAP*DAP*DGP*DTP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DG)-3') ; 6166.030 1 ? ? ? ? 3 polymer man 'Trans-acting T-cell-specific transcription factor GATA-3' 7044.058 2 ? ? 'UNP residues 308-370' ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'GATA-binding factor 3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DT)(DG)(DA)(DT)(DA)(DA)(DG)(DA)(DC)(DT)(DT)(DA)(DT)(DC)(DT)(DG)(DC)' TTCTGATAAGACTTATCTGC Y ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DG)(DC)(DA)(DG)(DA)(DT)(DA)(DA)(DG)(DT)(DC)(DT)(DT)(DA)(DT)(DC)(DA)(DG)' AAGCAGATAAGTCTTATCAG Z ? 3 'polypeptide(L)' no no SAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMSS SAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMSS D,C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DG n 1 6 DA n 1 7 DT n 1 8 DA n 1 9 DA n 1 10 DG n 1 11 DA n 1 12 DC n 1 13 DT n 1 14 DT n 1 15 DA n 1 16 DT n 1 17 DC n 1 18 DT n 1 19 DG n 1 20 DC n 2 1 DA n 2 2 DA n 2 3 DG n 2 4 DC n 2 5 DA n 2 6 DG n 2 7 DA n 2 8 DT n 2 9 DA n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DC n 2 14 DT n 2 15 DT n 2 16 DA n 2 17 DT n 2 18 DC n 2 19 DA n 2 20 DG n 3 1 SER n 3 2 ALA n 3 3 ALA n 3 4 ARG n 3 5 ARG n 3 6 ALA n 3 7 GLY n 3 8 THR n 3 9 SER n 3 10 CYS n 3 11 ALA n 3 12 ASN n 3 13 CYS n 3 14 GLN n 3 15 THR n 3 16 THR n 3 17 THR n 3 18 THR n 3 19 THR n 3 20 LEU n 3 21 TRP n 3 22 ARG n 3 23 ARG n 3 24 ASN n 3 25 ALA n 3 26 ASN n 3 27 GLY n 3 28 ASP n 3 29 PRO n 3 30 VAL n 3 31 CYS n 3 32 ASN n 3 33 ALA n 3 34 CYS n 3 35 GLY n 3 36 LEU n 3 37 TYR n 3 38 TYR n 3 39 LYS n 3 40 LEU n 3 41 HIS n 3 42 ASN n 3 43 ILE n 3 44 ASN n 3 45 ARG n 3 46 PRO n 3 47 LEU n 3 48 THR n 3 49 MET n 3 50 LYS n 3 51 LYS n 3 52 GLU n 3 53 GLY n 3 54 ILE n 3 55 GLN n 3 56 THR n 3 57 ARG n 3 58 ASN n 3 59 ARG n 3 60 LYS n 3 61 MET n 3 62 SER n 3 63 SER n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Gata3, Gata-3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta plyS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pEt28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP GATA3_MOUSE P23772 3 SAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMSS 308 ? 2 PDB 3DFV 3DFV 1 TTCTGATAAGACTTATCTGC ? ? 3 PDB 3DFV 3DFV 2 AAGCAGATAAGTCTTATCAG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DFV D 1 ? 63 ? P23772 308 ? 370 ? 308 370 2 1 3DFV C 1 ? 63 ? P23772 308 ? 370 ? 308 370 3 2 3DFV Y 1 ? 20 ? 3DFV 1 ? 20 ? 1 20 4 3 3DFV Z 1 ? 20 ? 3DFV 1 ? 20 ? 1 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.entry_id 3DFV _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.47 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.15 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 290 _exptl_crystal_grow.pdbx_details '20 mM Mg(OAc), Cacodylic acid, 30% PEG 4K, pH 6.5, hanging drop, temperature 290K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Cacodylic acid' ? ? ? 1 2 1 'Mg(OAc)' ? ? ? 1 3 2 'Cacodylic acid' ? ? ? 1 4 2 'Mg(OAc)' ? ? ? 1 5 2 'PEG 4K' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-03-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07810 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_wavelength_list 1.07810 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 # _reflns.entry_id 3DFV _reflns.d_resolution_high 3.100 _reflns.d_resolution_low 30.000 _reflns.number_obs 4593 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_netI_over_sigmaI 13.000 _reflns.pdbx_chi_squared 1.742 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 3.10 3.21 ? ? ? 0.164 ? ? 0.927 ? ? 437 100.00 ? 1 3.21 3.34 ? ? ? 0.078 ? ? 1.015 ? ? 450 100.00 ? 2 3.34 3.49 ? ? ? 0.094 ? ? 1.186 ? ? 464 100.00 ? 3 3.49 3.67 ? ? ? 0.104 ? ? 1.373 ? ? 437 100.00 ? 4 3.67 3.90 ? ? ? 0.107 ? ? 1.556 ? ? 477 100.00 ? 5 3.90 4.21 ? ? ? 0.098 ? ? 1.798 ? ? 445 99.60 ? 6 4.21 4.63 ? ? ? 0.098 ? ? 2.419 ? ? 460 100.00 ? 7 4.63 5.29 ? ? ? 0.088 ? ? 2.203 ? ? 464 100.00 ? 8 5.29 6.66 ? ? ? 0.071 ? ? 2.489 ? ? 466 100.00 ? 9 6.66 30.00 ? ? ? 0.044 ? ? 2.493 ? ? 493 99.20 ? 10 # _refine.entry_id 3DFV _refine.ls_d_res_high 3.100 _refine.ls_d_res_low 30.000 _refine.pdbx_ls_sigma_F 400.00 _refine.ls_percent_reflns_obs 87.400 _refine.ls_number_reflns_obs 4032 _refine.ls_R_factor_R_work 0.276 _refine.ls_R_factor_R_free 0.289 _refine.ls_percent_reflns_R_free 7.300 _refine.ls_number_reflns_R_free 336 _refine.B_iso_mean 48.076 _refine.solvent_model_param_bsol 19.348 _refine.aniso_B[1][1] -35.149 _refine.aniso_B[2][2] 14.628 _refine.aniso_B[3][3] 20.521 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] -19.087 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.B_iso_max 160.92 _refine.B_iso_min 1.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 984 _refine_hist.pdbx_number_atoms_nucleic_acid 814 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1800 _refine_hist.d_res_high 3.100 _refine_hist.d_res_low 30.000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_mcbond_it ? 2.726 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 3.069 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 4.679 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 5.352 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 3DFV _struct.title 'Adjacent GATA DNA binding' _struct.pdbx_descriptor 'Trans-acting T-cell-specific transcription factor GATA-3/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DFV _struct_keywords.text ;Transcription/DNA, Activator, DNA-binding, Metal-binding, Nucleus, Transcription, Transcription regulation, Zinc, Zinc-finger, Transcription-DNA complex ; _struct_keywords.pdbx_keywords Transcription/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN C 32 ? ASN C 42 ? ASN D 339 ASN D 349 1 ? 11 HELX_P HELX_P2 2 PRO C 46 ? LYS C 50 ? PRO D 353 LYS D 357 5 ? 5 HELX_P HELX_P3 3 ASN D 32 ? ASN D 42 ? ASN C 339 ASN C 349 1 ? 11 HELX_P HELX_P4 4 PRO D 46 ? LYS D 50 ? PRO C 353 LYS C 357 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? C CYS 13 SG ? ? ? 1_555 C CYS 31 SG ? ? D CYS 320 D CYS 338 1_555 ? ? ? ? ? ? ? 2.997 ? metalc1 metalc ? ? C CYS 10 SG ? ? ? 1_555 E ZN . ZN ? ? D CYS 317 D ZN 30 1_555 ? ? ? ? ? ? ? 2.365 ? metalc2 metalc ? ? C CYS 13 SG ? ? ? 1_555 E ZN . ZN ? ? D CYS 320 D ZN 30 1_555 ? ? ? ? ? ? ? 2.432 ? metalc3 metalc ? ? C CYS 31 SG ? ? ? 1_555 E ZN . ZN ? ? D CYS 338 D ZN 30 1_555 ? ? ? ? ? ? ? 2.491 ? metalc4 metalc ? ? C CYS 34 SG ? ? ? 1_555 E ZN . ZN ? ? D CYS 341 D ZN 30 1_555 ? ? ? ? ? ? ? 2.297 ? metalc5 metalc ? ? D CYS 10 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 317 C ZN 30 1_555 ? ? ? ? ? ? ? 2.342 ? metalc6 metalc ? ? D CYS 13 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 320 C ZN 30 1_555 ? ? ? ? ? ? ? 2.276 ? metalc7 metalc ? ? D CYS 31 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 338 C ZN 30 1_555 ? ? ? ? ? ? ? 2.430 ? metalc8 metalc ? ? D CYS 34 SG ? ? ? 1_555 F ZN . ZN ? ? C CYS 341 C ZN 30 1_555 ? ? ? ? ? ? ? 2.433 ? hydrog1 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 20 N1 ? ? Y DC 3 Z DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 20 O6 ? ? Y DC 3 Z DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 20 N2 ? ? Y DC 3 Z DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 19 N1 ? ? Y DT 4 Z DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 19 N6 ? ? Y DT 4 Z DA 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 18 N3 ? ? Y DG 5 Z DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 18 O2 ? ? Y DG 5 Z DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 18 N4 ? ? Y DG 5 Z DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 17 N3 ? ? Y DA 6 Z DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 17 O4 ? ? Y DA 6 Z DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 16 N1 ? ? Y DT 7 Z DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 16 N6 ? ? Y DT 7 Z DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 15 N3 ? ? Y DA 8 Z DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 15 O4 ? ? Y DA 8 Z DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 14 N3 ? ? Y DA 9 Z DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 14 O4 ? ? Y DA 9 Z DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 13 N3 ? ? Y DG 10 Z DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 13 O2 ? ? Y DG 10 Z DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 13 N4 ? ? Y DG 10 Z DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 12 N3 ? ? Y DA 11 Z DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 12 O4 ? ? Y DA 11 Z DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 11 N1 ? ? Y DC 12 Z DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 11 O6 ? ? Y DC 12 Z DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 11 N2 ? ? Y DC 12 Z DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DT 13 N3 ? ? ? 1_555 B DA 10 N1 ? ? Y DT 13 Z DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DT 13 O4 ? ? ? 1_555 B DA 10 N6 ? ? Y DT 13 Z DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 9 N1 ? ? Y DT 14 Z DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 9 N6 ? ? Y DT 14 Z DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DT 8 N3 ? ? Y DA 15 Z DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DT 8 O4 ? ? Y DA 15 Z DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 7 N1 ? ? Y DT 16 Z DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A DT 16 O4 ? ? ? 1_555 B DA 7 N6 ? ? Y DT 16 Z DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 6 N1 ? ? Y DC 17 Z DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 6 O6 ? ? Y DC 17 Z DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 6 N2 ? ? Y DC 17 Z DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A DT 18 N3 ? ? ? 1_555 B DA 5 N1 ? ? Y DT 18 Z DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A DT 18 O4 ? ? ? 1_555 B DA 5 N6 ? ? Y DT 18 Z DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 4 N3 ? ? Y DG 19 Z DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 4 O2 ? ? Y DG 19 Z DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 4 N4 ? ? Y DG 19 Z DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A DC 20 N3 ? ? ? 1_555 B DG 3 N1 ? ? Y DC 20 Z DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A DC 20 N4 ? ? ? 1_555 B DG 3 O6 ? ? Y DC 20 Z DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A DC 20 O2 ? ? ? 1_555 B DG 3 N2 ? ? Y DC 20 Z DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP C 21 ? ARG C 23 ? TRP D 328 ARG D 330 A 2 PRO C 29 ? CYS C 31 ? PRO D 336 CYS D 338 B 1 TRP D 21 ? ARG D 23 ? TRP C 328 ARG C 330 B 2 PRO D 29 ? CYS D 31 ? PRO C 336 CYS C 338 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG C 22 ? N ARG D 329 O VAL C 30 ? O VAL D 337 B 1 2 N ARG D 22 ? N ARG C 329 O VAL D 30 ? O VAL C 337 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN D 30' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN C 30' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS C 10 ? CYS D 317 . ? 1_555 ? 2 AC1 4 CYS C 13 ? CYS D 320 . ? 1_555 ? 3 AC1 4 CYS C 31 ? CYS D 338 . ? 1_555 ? 4 AC1 4 CYS C 34 ? CYS D 341 . ? 1_555 ? 5 AC2 4 CYS D 10 ? CYS C 317 . ? 1_555 ? 6 AC2 4 CYS D 13 ? CYS C 320 . ? 1_555 ? 7 AC2 4 CYS D 31 ? CYS C 338 . ? 1_555 ? 8 AC2 4 CYS D 34 ? CYS C 341 . ? 1_555 ? # _atom_sites.entry_id 3DFV _atom_sites.fract_transf_matrix[1][1] 0.007248 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003114 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027967 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019975 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T Y . n A 1 2 DT 2 2 2 DT T Y . n A 1 3 DC 3 3 3 DC C Y . n A 1 4 DT 4 4 4 DT T Y . n A 1 5 DG 5 5 5 DG G Y . n A 1 6 DA 6 6 6 DA A Y . n A 1 7 DT 7 7 7 DT T Y . n A 1 8 DA 8 8 8 DA A Y . n A 1 9 DA 9 9 9 DA A Y . n A 1 10 DG 10 10 10 DG G Y . n A 1 11 DA 11 11 11 DA A Y . n A 1 12 DC 12 12 12 DC C Y . n A 1 13 DT 13 13 13 DT T Y . n A 1 14 DT 14 14 14 DT T Y . n A 1 15 DA 15 15 15 DA A Y . n A 1 16 DT 16 16 16 DT T Y . n A 1 17 DC 17 17 17 DC C Y . n A 1 18 DT 18 18 18 DT T Y . n A 1 19 DG 19 19 19 DG G Y . n A 1 20 DC 20 20 20 DC C Y . n B 2 1 DA 1 1 1 DA A Z . n B 2 2 DA 2 2 2 DA A Z . n B 2 3 DG 3 3 3 DG G Z . n B 2 4 DC 4 4 4 DC C Z . n B 2 5 DA 5 5 5 DA A Z . n B 2 6 DG 6 6 6 DG G Z . n B 2 7 DA 7 7 7 DA A Z . n B 2 8 DT 8 8 8 DT T Z . n B 2 9 DA 9 9 9 DA A Z . n B 2 10 DA 10 10 10 DA A Z . n B 2 11 DG 11 11 11 DG G Z . n B 2 12 DT 12 12 12 DT T Z . n B 2 13 DC 13 13 13 DC C Z . n B 2 14 DT 14 14 14 DT T Z . n B 2 15 DT 15 15 15 DT T Z . n B 2 16 DA 16 16 16 DA A Z . n B 2 17 DT 17 17 17 DT T Z . n B 2 18 DC 18 18 18 DC C Z . n B 2 19 DA 19 19 19 DA A Z . n B 2 20 DG 20 20 20 DG G Z . n C 3 1 SER 1 308 ? ? ? D . n C 3 2 ALA 2 309 ? ? ? D . n C 3 3 ALA 3 310 ? ? ? D . n C 3 4 ARG 4 311 311 ARG ARG D . n C 3 5 ARG 5 312 312 ARG ARG D . n C 3 6 ALA 6 313 313 ALA ALA D . n C 3 7 GLY 7 314 314 GLY GLY D . n C 3 8 THR 8 315 315 THR THR D . n C 3 9 SER 9 316 316 SER SER D . n C 3 10 CYS 10 317 317 CYS CYS D . n C 3 11 ALA 11 318 318 ALA ALA D . n C 3 12 ASN 12 319 319 ASN ASN D . n C 3 13 CYS 13 320 320 CYS CYS D . n C 3 14 GLN 14 321 321 GLN GLN D . n C 3 15 THR 15 322 322 THR THR D . n C 3 16 THR 16 323 323 THR THR D . n C 3 17 THR 17 324 324 THR THR D . n C 3 18 THR 18 325 325 THR THR D . n C 3 19 THR 19 326 326 THR THR D . n C 3 20 LEU 20 327 327 LEU LEU D . n C 3 21 TRP 21 328 328 TRP TRP D . n C 3 22 ARG 22 329 329 ARG ARG D . n C 3 23 ARG 23 330 330 ARG ARG D . n C 3 24 ASN 24 331 331 ASN ASN D . n C 3 25 ALA 25 332 332 ALA ALA D . n C 3 26 ASN 26 333 333 ASN ASN D . n C 3 27 GLY 27 334 334 GLY GLY D . n C 3 28 ASP 28 335 335 ASP ASP D . n C 3 29 PRO 29 336 336 PRO PRO D . n C 3 30 VAL 30 337 337 VAL VAL D . n C 3 31 CYS 31 338 338 CYS CYS D . n C 3 32 ASN 32 339 339 ASN ASN D . n C 3 33 ALA 33 340 340 ALA ALA D . n C 3 34 CYS 34 341 341 CYS CYS D . n C 3 35 GLY 35 342 342 GLY GLY D . n C 3 36 LEU 36 343 343 LEU LEU D . n C 3 37 TYR 37 344 344 TYR TYR D . n C 3 38 TYR 38 345 345 TYR TYR D . n C 3 39 LYS 39 346 346 LYS LYS D . n C 3 40 LEU 40 347 347 LEU LEU D . n C 3 41 HIS 41 348 348 HIS HIS D . n C 3 42 ASN 42 349 349 ASN ASN D . n C 3 43 ILE 43 350 350 ILE ILE D . n C 3 44 ASN 44 351 351 ASN ASN D . n C 3 45 ARG 45 352 352 ARG ARG D . n C 3 46 PRO 46 353 353 PRO PRO D . n C 3 47 LEU 47 354 354 LEU LEU D . n C 3 48 THR 48 355 355 THR THR D . n C 3 49 MET 49 356 356 MET MET D . n C 3 50 LYS 50 357 357 LYS LYS D . n C 3 51 LYS 51 358 358 LYS LYS D . n C 3 52 GLU 52 359 359 GLU GLU D . n C 3 53 GLY 53 360 360 GLY GLY D . n C 3 54 ILE 54 361 361 ILE ILE D . n C 3 55 GLN 55 362 362 GLN GLN D . n C 3 56 THR 56 363 363 THR THR D . n C 3 57 ARG 57 364 364 ARG ARG D . n C 3 58 ASN 58 365 365 ASN ASN D . n C 3 59 ARG 59 366 366 ARG ARG D . n C 3 60 LYS 60 367 ? ? ? D . n C 3 61 MET 61 368 ? ? ? D . n C 3 62 SER 62 369 ? ? ? D . n C 3 63 SER 63 370 ? ? ? D . n D 3 1 SER 1 308 ? ? ? C . n D 3 2 ALA 2 309 ? ? ? C . n D 3 3 ALA 3 310 ? ? ? C . n D 3 4 ARG 4 311 311 ARG ARG C . n D 3 5 ARG 5 312 312 ARG ARG C . n D 3 6 ALA 6 313 313 ALA ALA C . n D 3 7 GLY 7 314 314 GLY GLY C . n D 3 8 THR 8 315 315 THR THR C . n D 3 9 SER 9 316 316 SER SER C . n D 3 10 CYS 10 317 317 CYS CYS C . n D 3 11 ALA 11 318 318 ALA ALA C . n D 3 12 ASN 12 319 319 ASN ASN C . n D 3 13 CYS 13 320 320 CYS CYS C . n D 3 14 GLN 14 321 321 GLN GLN C . n D 3 15 THR 15 322 322 THR THR C . n D 3 16 THR 16 323 323 THR THR C . n D 3 17 THR 17 324 324 THR THR C . n D 3 18 THR 18 325 325 THR THR C . n D 3 19 THR 19 326 326 THR THR C . n D 3 20 LEU 20 327 327 LEU LEU C . n D 3 21 TRP 21 328 328 TRP TRP C . n D 3 22 ARG 22 329 329 ARG ARG C . n D 3 23 ARG 23 330 330 ARG ARG C . n D 3 24 ASN 24 331 331 ASN ASN C . n D 3 25 ALA 25 332 332 ALA ALA C . n D 3 26 ASN 26 333 333 ASN ASN C . n D 3 27 GLY 27 334 334 GLY GLY C . n D 3 28 ASP 28 335 335 ASP ASP C . n D 3 29 PRO 29 336 336 PRO PRO C . n D 3 30 VAL 30 337 337 VAL VAL C . n D 3 31 CYS 31 338 338 CYS CYS C . n D 3 32 ASN 32 339 339 ASN ASN C . n D 3 33 ALA 33 340 340 ALA ALA C . n D 3 34 CYS 34 341 341 CYS CYS C . n D 3 35 GLY 35 342 342 GLY GLY C . n D 3 36 LEU 36 343 343 LEU LEU C . n D 3 37 TYR 37 344 344 TYR TYR C . n D 3 38 TYR 38 345 345 TYR TYR C . n D 3 39 LYS 39 346 346 LYS LYS C . n D 3 40 LEU 40 347 347 LEU LEU C . n D 3 41 HIS 41 348 348 HIS HIS C . n D 3 42 ASN 42 349 349 ASN ASN C . n D 3 43 ILE 43 350 350 ILE ILE C . n D 3 44 ASN 44 351 351 ASN ASN C . n D 3 45 ARG 45 352 352 ARG ARG C . n D 3 46 PRO 46 353 353 PRO PRO C . n D 3 47 LEU 47 354 354 LEU LEU C . n D 3 48 THR 48 355 355 THR THR C . n D 3 49 MET 49 356 356 MET MET C . n D 3 50 LYS 50 357 357 LYS LYS C . n D 3 51 LYS 51 358 358 LYS LYS C . n D 3 52 GLU 52 359 359 GLU GLU C . n D 3 53 GLY 53 360 360 GLY GLY C . n D 3 54 ILE 54 361 361 ILE ILE C . n D 3 55 GLN 55 362 362 GLN GLN C . n D 3 56 THR 56 363 363 THR THR C . n D 3 57 ARG 57 364 364 ARG ARG C . n D 3 58 ASN 58 365 365 ASN ASN C . n D 3 59 ARG 59 366 366 ARG ARG C . n D 3 60 LYS 60 367 ? ? ? C . n D 3 61 MET 61 368 ? ? ? C . n D 3 62 SER 62 369 ? ? ? C . n D 3 63 SER 63 370 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN 1 30 30 ZN ZN D . F 4 ZN 1 30 30 ZN ZN C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6530 ? 1 MORE -40 ? 1 'SSA (A^2)' 11640 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? C CYS 10 ? D CYS 317 ? 1_555 ZN ? E ZN . ? D ZN 30 ? 1_555 SG ? C CYS 13 ? D CYS 320 ? 1_555 89.3 ? 2 SG ? C CYS 10 ? D CYS 317 ? 1_555 ZN ? E ZN . ? D ZN 30 ? 1_555 SG ? C CYS 31 ? D CYS 338 ? 1_555 87.5 ? 3 SG ? C CYS 13 ? D CYS 320 ? 1_555 ZN ? E ZN . ? D ZN 30 ? 1_555 SG ? C CYS 31 ? D CYS 338 ? 1_555 75.0 ? 4 SG ? C CYS 10 ? D CYS 317 ? 1_555 ZN ? E ZN . ? D ZN 30 ? 1_555 SG ? C CYS 34 ? D CYS 341 ? 1_555 107.9 ? 5 SG ? C CYS 13 ? D CYS 320 ? 1_555 ZN ? E ZN . ? D ZN 30 ? 1_555 SG ? C CYS 34 ? D CYS 341 ? 1_555 149.3 ? 6 SG ? C CYS 31 ? D CYS 338 ? 1_555 ZN ? E ZN . ? D ZN 30 ? 1_555 SG ? C CYS 34 ? D CYS 341 ? 1_555 129.5 ? 7 SG ? D CYS 10 ? C CYS 317 ? 1_555 ZN ? F ZN . ? C ZN 30 ? 1_555 SG ? D CYS 13 ? C CYS 320 ? 1_555 93.4 ? 8 SG ? D CYS 10 ? C CYS 317 ? 1_555 ZN ? F ZN . ? C ZN 30 ? 1_555 SG ? D CYS 31 ? C CYS 338 ? 1_555 87.1 ? 9 SG ? D CYS 13 ? C CYS 320 ? 1_555 ZN ? F ZN . ? C ZN 30 ? 1_555 SG ? D CYS 31 ? C CYS 338 ? 1_555 79.3 ? 10 SG ? D CYS 10 ? C CYS 317 ? 1_555 ZN ? F ZN . ? C ZN 30 ? 1_555 SG ? D CYS 34 ? C CYS 341 ? 1_555 104.2 ? 11 SG ? D CYS 13 ? C CYS 320 ? 1_555 ZN ? F ZN . ? C ZN 30 ? 1_555 SG ? D CYS 34 ? C CYS 341 ? 1_555 151.6 ? 12 SG ? D CYS 31 ? C CYS 338 ? 1_555 ZN ? F ZN . ? C ZN 30 ? 1_555 SG ? D CYS 34 ? C CYS 341 ? 1_555 123.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-07-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _phasing.method MR # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 3 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 7 CNS . ? ? ? ? phasing ? ? ? 8 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 C _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 319 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OE1 _pdbx_validate_close_contact.auth_asym_id_2 C _pdbx_validate_close_contact.auth_comp_id_2 GLN _pdbx_validate_close_contact.auth_seq_id_2 321 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 Z _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 4 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 Z _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 4 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 Z _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 4 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.17 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 1.87 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG D 312 ? ? 178.20 139.48 2 1 ALA D 318 ? ? -58.86 0.92 3 1 ASN D 319 ? ? -135.01 -52.26 4 1 GLN D 321 ? ? 57.15 -2.86 5 1 THR D 323 ? ? -143.36 51.85 6 1 THR D 324 ? ? -171.93 95.69 7 1 THR D 326 ? ? -4.69 -69.61 8 1 ALA D 332 ? ? -64.89 36.96 9 1 ASN D 333 ? ? -148.29 14.05 10 1 PRO D 336 ? ? -37.60 138.56 11 1 ASN D 339 ? ? -24.24 -55.37 12 1 ASN D 349 ? ? 43.18 26.65 13 1 ASN D 351 ? ? -48.64 171.95 14 1 PRO D 353 ? ? -43.32 103.85 15 1 THR D 355 ? B -43.42 -86.09 16 1 MET D 356 ? B 32.89 43.79 17 1 LYS D 358 ? B -38.73 147.71 18 1 GLU D 359 ? A -75.31 -79.78 19 1 GLU D 359 ? B -60.11 -98.76 20 1 ILE D 361 ? B 166.28 2.94 21 1 ARG D 364 ? B -68.86 -173.32 22 1 ARG C 312 ? ? 168.41 140.36 23 1 ALA C 318 ? ? -58.95 0.04 24 1 ASN C 319 ? ? -134.90 -51.79 25 1 THR C 323 ? ? -144.11 51.92 26 1 THR C 324 ? ? -171.01 95.84 27 1 THR C 326 ? ? -4.83 -69.55 28 1 ALA C 332 ? ? -65.16 36.86 29 1 ASN C 333 ? ? -148.28 14.31 30 1 PRO C 336 ? ? -37.79 138.55 31 1 ASN C 339 ? ? -23.42 -56.59 32 1 ASN C 349 ? ? 48.37 23.28 33 1 ASN C 351 ? ? -48.43 171.58 34 1 PRO C 353 ? ? -42.25 104.28 35 1 GLU C 359 ? ? -74.88 -79.89 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA Y 9 ? ? 0.076 'SIDE CHAIN' 2 1 DA Z 7 ? ? 0.053 'SIDE CHAIN' 3 1 DA Z 10 ? ? 0.059 'SIDE CHAIN' 4 1 DT Z 15 ? ? 0.069 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D SER 308 ? C SER 1 2 1 Y 1 D ALA 309 ? C ALA 2 3 1 Y 1 D ALA 310 ? C ALA 3 4 1 Y 1 D LYS 367 ? C LYS 60 5 1 Y 1 D MET 368 ? C MET 61 6 1 Y 1 D SER 369 ? C SER 62 7 1 Y 1 D SER 370 ? C SER 63 8 1 Y 1 C SER 308 ? D SER 1 9 1 Y 1 C ALA 309 ? D ALA 2 10 1 Y 1 C ALA 310 ? D ALA 3 11 1 Y 1 C LYS 367 ? D LYS 60 12 1 Y 1 C MET 368 ? D MET 61 13 1 Y 1 C SER 369 ? D SER 62 14 1 Y 1 C SER 370 ? D SER 63 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3DFV 'double helix' 3DFV 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 3 1_555 B DG 20 1_555 0.155 -0.095 -0.140 0.859 2.505 0.845 1 Y_DC3:DG20_Z Y 3 ? Z 20 ? 19 1 1 A DT 4 1_555 B DA 19 1_555 -0.078 -0.099 -0.017 1.411 0.857 -6.207 2 Y_DT4:DA19_Z Y 4 ? Z 19 ? 20 1 1 A DG 5 1_555 B DC 18 1_555 0.005 -0.216 -0.082 1.924 -8.668 1.198 3 Y_DG5:DC18_Z Y 5 ? Z 18 ? 19 1 1 A DA 6 1_555 B DT 17 1_555 -0.197 -0.253 0.239 3.219 -0.358 -5.780 4 Y_DA6:DT17_Z Y 6 ? Z 17 ? 20 1 1 A DT 7 1_555 B DA 16 1_555 -0.222 -0.002 -0.286 -0.531 -2.538 -6.341 5 Y_DT7:DA16_Z Y 7 ? Z 16 ? 20 1 1 A DA 8 1_555 B DT 15 1_555 0.288 -0.009 -0.439 -5.006 1.593 6.316 6 Y_DA8:DT15_Z Y 8 ? Z 15 ? 20 1 1 A DA 9 1_555 B DT 14 1_555 0.160 -0.122 0.205 -1.672 -8.050 4.383 7 Y_DA9:DT14_Z Y 9 ? Z 14 ? 20 1 1 A DG 10 1_555 B DC 13 1_555 0.216 -0.037 -0.014 5.075 -5.887 1.638 8 Y_DG10:DC13_Z Y 10 ? Z 13 ? 19 1 1 A DA 11 1_555 B DT 12 1_555 0.193 0.005 -0.343 -9.874 -28.813 -5.288 9 Y_DA11:DT12_Z Y 11 ? Z 12 ? 20 1 1 A DC 12 1_555 B DG 11 1_555 -0.247 -0.091 -0.372 -4.010 -11.950 1.348 10 Y_DC12:DG11_Z Y 12 ? Z 11 ? 19 1 1 A DT 13 1_555 B DA 10 1_555 -0.181 -0.257 -0.056 -0.864 -3.296 11.946 11 Y_DT13:DA10_Z Y 13 ? Z 10 ? 20 1 1 A DT 14 1_555 B DA 9 1_555 0.070 -0.131 -0.522 11.736 0.737 4.681 12 Y_DT14:DA9_Z Y 14 ? Z 9 ? 20 1 1 A DA 15 1_555 B DT 8 1_555 0.162 -0.057 -0.061 -0.598 -4.384 -5.401 13 Y_DA15:DT8_Z Y 15 ? Z 8 ? 20 1 1 A DT 16 1_555 B DA 7 1_555 0.199 -0.353 0.107 -1.779 6.927 -1.293 14 Y_DT16:DA7_Z Y 16 ? Z 7 ? 20 1 1 A DC 17 1_555 B DG 6 1_555 0.129 -0.247 -0.112 -2.462 -4.206 -1.563 15 Y_DC17:DG6_Z Y 17 ? Z 6 ? 19 1 1 A DT 18 1_555 B DA 5 1_555 0.160 -0.185 0.191 1.282 -3.219 0.333 16 Y_DT18:DA5_Z Y 18 ? Z 5 ? 20 1 1 A DG 19 1_555 B DC 4 1_555 -0.033 -0.004 0.098 1.931 0.676 1.608 17 Y_DG19:DC4_Z Y 19 ? Z 4 ? 19 1 1 A DC 20 1_555 B DG 3 1_555 0.246 -0.162 0.571 -2.186 3.130 3.918 18 Y_DC20:DG3_Z Y 20 ? Z 3 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 3 1_555 B DG 20 1_555 A DT 4 1_555 B DA 19 1_555 -0.565 -0.183 3.497 -1.121 1.394 37.836 -0.473 0.716 3.503 2.148 1.727 37.877 1 YY_DC3DT4:DA19DG20_ZZ Y 3 ? Z 20 ? Y 4 ? Z 19 ? 1 A DT 4 1_555 B DA 19 1_555 A DG 5 1_555 B DC 18 1_555 0.260 -0.714 3.247 0.474 7.033 33.575 -2.285 -0.368 3.043 12.011 -0.809 34.286 2 YY_DT4DG5:DC18DA19_ZZ Y 4 ? Z 19 ? Y 5 ? Z 18 ? 1 A DG 5 1_555 B DC 18 1_555 A DA 6 1_555 B DT 17 1_555 -0.302 -0.352 3.096 -3.044 -1.043 35.710 -0.429 0.075 3.119 -1.697 4.951 35.850 3 YY_DG5DA6:DT17DC18_ZZ Y 5 ? Z 18 ? Y 6 ? Z 17 ? 1 A DA 6 1_555 B DT 17 1_555 A DT 7 1_555 B DA 16 1_555 -0.075 -1.192 3.399 2.829 -3.951 35.263 -1.341 0.559 3.491 -6.484 -4.643 35.586 4 YY_DA6DT7:DA16DT17_ZZ Y 6 ? Z 17 ? Y 7 ? Z 16 ? 1 A DT 7 1_555 B DA 16 1_555 A DA 8 1_555 B DT 15 1_555 1.928 1.016 3.467 3.844 3.225 36.970 1.118 -2.453 3.714 5.056 -6.028 37.297 5 YY_DT7DA8:DT15DA16_ZZ Y 7 ? Z 16 ? Y 8 ? Z 15 ? 1 A DA 8 1_555 B DT 15 1_555 A DA 9 1_555 B DT 14 1_555 -1.995 0.773 3.294 -4.802 0.457 38.612 1.103 2.387 3.516 0.688 7.228 38.900 6 YY_DA8DA9:DT14DT15_ZZ Y 8 ? Z 15 ? Y 9 ? Z 14 ? 1 A DA 9 1_555 B DT 14 1_555 A DG 10 1_555 B DC 13 1_555 0.378 0.471 3.279 1.512 2.519 29.786 0.386 -0.416 3.321 4.885 -2.932 29.928 7 YY_DA9DG10:DC13DT14_ZZ Y 9 ? Z 14 ? Y 10 ? Z 13 ? 1 A DG 10 1_555 B DC 13 1_555 A DA 11 1_555 B DT 12 1_555 -1.440 1.002 3.561 -8.179 -3.403 41.988 1.750 1.059 3.677 -4.687 11.264 42.871 8 YY_DG10DA11:DT12DC13_ZZ Y 10 ? Z 13 ? Y 11 ? Z 12 ? 1 A DA 11 1_555 B DT 12 1_555 A DC 12 1_555 B DG 11 1_555 0.596 0.606 3.095 3.705 -10.723 39.888 1.927 -0.473 2.887 -15.345 -5.302 41.407 9 YY_DA11DC12:DG11DT12_ZZ Y 11 ? Z 12 ? Y 12 ? Z 11 ? 1 A DC 12 1_555 B DG 11 1_555 A DT 13 1_555 B DA 10 1_555 0.262 1.214 3.369 -1.087 -2.566 34.131 2.472 -0.619 3.262 -4.363 1.849 34.242 10 YY_DC12DT13:DA10DG11_ZZ Y 12 ? Z 11 ? Y 13 ? Z 10 ? 1 A DT 13 1_555 B DA 10 1_555 A DT 14 1_555 B DA 9 1_555 1.206 0.805 3.004 3.832 2.536 35.788 0.961 -1.434 3.160 4.106 -6.204 36.072 11 YY_DT13DT14:DA9DA10_ZZ Y 13 ? Z 10 ? Y 14 ? Z 9 ? 1 A DT 14 1_555 B DA 9 1_555 A DA 15 1_555 B DT 8 1_555 -1.256 0.668 3.691 -3.420 1.752 39.752 0.746 1.387 3.807 2.569 5.015 39.930 12 YY_DT14DA15:DT8DA9_ZZ Y 14 ? Z 9 ? Y 15 ? Z 8 ? 1 A DA 15 1_555 B DT 8 1_555 A DT 16 1_555 B DA 7 1_555 0.212 -0.795 3.408 -0.949 -4.256 33.463 -0.640 -0.528 3.473 -7.353 1.639 33.738 13 YY_DA15DT16:DA7DT8_ZZ Y 15 ? Z 8 ? Y 16 ? Z 7 ? 1 A DT 16 1_555 B DA 7 1_555 A DC 17 1_555 B DG 6 1_555 0.308 -0.388 3.195 4.666 0.307 36.265 -0.659 0.140 3.205 0.491 -7.458 36.555 14 YY_DT16DC17:DG6DA7_ZZ Y 16 ? Z 7 ? Y 17 ? Z 6 ? 1 A DC 17 1_555 B DG 6 1_555 A DT 18 1_555 B DA 5 1_555 0.448 -0.810 3.027 0.238 6.762 33.161 -2.377 -0.735 2.815 11.696 -0.411 33.825 15 YY_DC17DT18:DA5DG6_ZZ Y 17 ? Z 6 ? Y 18 ? Z 5 ? 1 A DT 18 1_555 B DA 5 1_555 A DG 19 1_555 B DC 4 1_555 0.234 0.161 3.397 -0.319 3.880 38.891 -0.245 -0.389 3.395 5.809 0.478 39.078 16 YY_DT18DG19:DC4DA5_ZZ Y 18 ? Z 5 ? Y 19 ? Z 4 ? 1 A DG 19 1_555 B DC 4 1_555 A DC 20 1_555 B DG 3 1_555 -0.097 -0.977 3.448 -3.520 -1.254 32.921 -1.489 -0.459 3.473 -2.204 6.186 33.127 17 YY_DG19DC20:DG3DC4_ZZ Y 19 ? Z 4 ? Y 20 ? Z 3 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #