HEADER OXIDOREDUCTASE 16-JUN-08 3DGZ TITLE CRYSTAL STRUCTURE OF MOUSE MITOCHONDRIAL THIOREDOXIN REDUCTASE, C- TITLE 2 TERMINAL 3-RESIDUE TRUNCATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MOUSE MITOCHONDRIAL THIOREDOXIN REDUCTASE, C-TERMINAL 3- COMPND 5 RESIDUE TRUNCATION; COMPND 6 SYNONYM: THIOREDOXIN REDUCTASE TR3; COMPND 7 EC: 1.8.1.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TXNRD2, TRXR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTYB3 KEYWDS OXIDOREDUCTASE, ROSSMANN, FLAVOPROTEIN, FAD, MITOCHONDRION, NADP, KEYWDS 2 REDOX-ACTIVE CENTER, SELENIUM, SELENOCYSTEINE, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ECKENROTH,R.J.HONDAL,S.J.EVERSE REVDAT 3 25-OCT-17 3DGZ 1 REMARK REVDAT 2 13-JUL-11 3DGZ 1 VERSN REVDAT 1 16-JUN-09 3DGZ 0 JRNL AUTH B.E.ECKENROTH,R.J.HONDAL,S.J.EVERSE JRNL TITL CRYSTAL STRUCTURE OF MOUSE MITOCHONDRIAL THIOREDOXIN JRNL TITL 2 REDUCTASE, C-TERMINAL 3-RESIDUE TRUNCATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 29515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1974 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : -0.42000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.278 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3862 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5257 ; 2.185 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 7.624 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 152 ;35.385 ;24.408 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 636 ;17.909 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.176 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2850 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1752 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2552 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 249 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 77 ; 0.339 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.092 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2474 ; 1.056 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3835 ; 1.578 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1655 ; 2.996 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1422 ; 4.207 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 79.9030 110.4680 -60.3380 REMARK 3 T TENSOR REMARK 3 T11: -0.0109 T22: 0.3350 REMARK 3 T33: -0.1224 T12: 0.1237 REMARK 3 T13: -0.0353 T23: 0.2114 REMARK 3 L TENSOR REMARK 3 L11: 8.3625 L22: 4.7012 REMARK 3 L33: 5.4097 L12: -2.5020 REMARK 3 L13: -0.3169 L23: -1.3675 REMARK 3 S TENSOR REMARK 3 S11: 0.3410 S12: 1.0851 S13: 0.4502 REMARK 3 S21: -0.4434 S22: -0.3372 S23: 0.3987 REMARK 3 S31: -0.4456 S32: -0.0083 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 90.1550 93.1190 -47.2640 REMARK 3 T TENSOR REMARK 3 T11: -0.1316 T22: 0.0983 REMARK 3 T33: -0.2671 T12: 0.0757 REMARK 3 T13: -0.0245 T23: -0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.6062 L22: 1.2435 REMARK 3 L33: 2.1921 L12: -0.1543 REMARK 3 L13: 0.6887 L23: -0.6359 REMARK 3 S TENSOR REMARK 3 S11: 0.2280 S12: 0.5492 S13: -0.0069 REMARK 3 S21: -0.2752 S22: -0.0581 S23: 0.0291 REMARK 3 S31: 0.1838 S32: 0.2666 S33: -0.1699 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 84.0760 82.0070 -19.4140 REMARK 3 T TENSOR REMARK 3 T11: -0.0413 T22: -0.0658 REMARK 3 T33: -0.1085 T12: 0.0090 REMARK 3 T13: -0.0850 T23: 0.0804 REMARK 3 L TENSOR REMARK 3 L11: 3.9108 L22: 1.4105 REMARK 3 L33: 13.3934 L12: 1.1519 REMARK 3 L13: 1.2911 L23: -3.3468 REMARK 3 S TENSOR REMARK 3 S11: -0.1799 S12: -0.1037 S13: -0.5695 REMARK 3 S21: -0.0570 S22: 0.0945 S23: -0.1757 REMARK 3 S31: 0.2841 S32: 0.3594 S33: 0.0854 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): 87.9840 78.5680 -35.7990 REMARK 3 T TENSOR REMARK 3 T11: -0.0378 T22: -0.0516 REMARK 3 T33: -0.1331 T12: 0.0268 REMARK 3 T13: -0.0508 T23: -0.0997 REMARK 3 L TENSOR REMARK 3 L11: 7.5056 L22: 4.4504 REMARK 3 L33: 11.5264 L12: 1.3920 REMARK 3 L13: -8.3682 L23: 0.2303 REMARK 3 S TENSOR REMARK 3 S11: -0.3412 S12: -0.0760 S13: -0.6565 REMARK 3 S21: -0.0169 S22: -0.1723 S23: -0.2563 REMARK 3 S31: 1.1345 S32: 0.7587 S33: 0.5134 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 99 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 79.7470 92.8510 -50.7910 REMARK 3 T TENSOR REMARK 3 T11: -0.0131 T22: 0.2063 REMARK 3 T33: -0.2448 T12: -0.0099 REMARK 3 T13: -0.0526 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 10.1689 L22: 13.8666 REMARK 3 L33: 0.0000 L12: 7.1544 REMARK 3 L13: -8.7797 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.6635 S12: 0.9195 S13: -0.2354 REMARK 3 S21: -0.9891 S22: -0.5992 S23: 0.3701 REMARK 3 S31: 0.7820 S32: -0.0637 S33: -0.0642 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 133 REMARK 3 ORIGIN FOR THE GROUP (A): 83.0830 106.1920 -64.3930 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.4067 REMARK 3 T33: -0.1037 T12: 0.1581 REMARK 3 T13: -0.0410 T23: 0.1273 REMARK 3 L TENSOR REMARK 3 L11: 8.8419 L22: 1.7953 REMARK 3 L33: 3.9292 L12: 0.1353 REMARK 3 L13: -1.4708 L23: -0.0835 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: 0.8130 S13: 0.7032 REMARK 3 S21: -0.4400 S22: 0.0138 S23: 0.0626 REMARK 3 S31: -0.2337 S32: -0.2361 S33: -0.0798 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 89.0630 105.7920 -66.3850 REMARK 3 T TENSOR REMARK 3 T11: 0.0490 T22: 0.2611 REMARK 3 T33: -0.1402 T12: -0.0456 REMARK 3 T13: 0.0119 T23: 0.1307 REMARK 3 L TENSOR REMARK 3 L11: 2.8157 L22: 3.2593 REMARK 3 L33: 7.3988 L12: 0.0781 REMARK 3 L13: 0.2482 L23: -0.6767 REMARK 3 S TENSOR REMARK 3 S11: -0.0504 S12: 0.6220 S13: 0.0399 REMARK 3 S21: -0.7419 S22: 0.2842 S23: 0.3320 REMARK 3 S31: 0.0995 S32: -0.1356 S33: -0.2339 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 102.7530 88.6330 -49.3040 REMARK 3 T TENSOR REMARK 3 T11: -0.0474 T22: 0.1821 REMARK 3 T33: -0.1882 T12: 0.1770 REMARK 3 T13: 0.0558 T23: -0.0950 REMARK 3 L TENSOR REMARK 3 L11: 4.7122 L22: 4.4010 REMARK 3 L33: 5.0628 L12: -1.2590 REMARK 3 L13: 1.0023 L23: -1.2501 REMARK 3 S TENSOR REMARK 3 S11: 0.2700 S12: 0.7254 S13: -0.0422 REMARK 3 S21: -0.5232 S22: -0.1478 S23: -0.4446 REMARK 3 S31: 0.3734 S32: 0.5195 S33: -0.1223 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 103.0530 95.4620 -33.5170 REMARK 3 T TENSOR REMARK 3 T11: -0.2588 T22: 0.0175 REMARK 3 T33: -0.1690 T12: 0.0749 REMARK 3 T13: -0.0177 T23: -0.0360 REMARK 3 L TENSOR REMARK 3 L11: 2.5032 L22: 3.5555 REMARK 3 L33: 1.7840 L12: 0.6186 REMARK 3 L13: 0.1235 L23: 1.9225 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.1448 S13: 0.0408 REMARK 3 S21: -0.0627 S22: 0.0649 S23: -0.3467 REMARK 3 S31: 0.1198 S32: 0.3216 S33: -0.1466 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 258 REMARK 3 ORIGIN FOR THE GROUP (A): 111.0270 85.0150 -40.7980 REMARK 3 T TENSOR REMARK 3 T11: -0.1624 T22: 0.2017 REMARK 3 T33: 0.0170 T12: 0.2242 REMARK 3 T13: -0.0629 T23: -0.1074 REMARK 3 L TENSOR REMARK 3 L11: 4.4298 L22: 3.9777 REMARK 3 L33: 5.5790 L12: 1.4737 REMARK 3 L13: -1.2270 L23: -0.7318 REMARK 3 S TENSOR REMARK 3 S11: 0.1767 S12: 0.6601 S13: -0.5385 REMARK 3 S21: -0.2465 S22: -0.0653 S23: -0.5778 REMARK 3 S31: 0.4090 S32: 0.6253 S33: -0.1114 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 259 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 119.0950 88.1350 -39.2380 REMARK 3 T TENSOR REMARK 3 T11: -0.0264 T22: 0.4595 REMARK 3 T33: 0.1578 T12: 0.2014 REMARK 3 T13: 0.0078 T23: -0.0665 REMARK 3 L TENSOR REMARK 3 L11: 14.9527 L22: 17.1922 REMARK 3 L33: 16.4598 L12: 12.9300 REMARK 3 L13: 8.5575 L23: 15.4482 REMARK 3 S TENSOR REMARK 3 S11: -0.2244 S12: 0.6863 S13: -0.2895 REMARK 3 S21: -0.3990 S22: 0.8951 S23: -1.3857 REMARK 3 S31: 0.0206 S32: 1.9369 S33: -0.6708 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 273 A 305 REMARK 3 ORIGIN FOR THE GROUP (A): 103.6210 101.8600 -54.0550 REMARK 3 T TENSOR REMARK 3 T11: -0.0818 T22: 0.3041 REMARK 3 T33: -0.0053 T12: 0.0363 REMARK 3 T13: 0.1332 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.4979 L22: 6.3259 REMARK 3 L33: 3.9092 L12: -1.5359 REMARK 3 L13: 1.9571 L23: -3.6916 REMARK 3 S TENSOR REMARK 3 S11: -0.0930 S12: 0.4850 S13: 0.3474 REMARK 3 S21: -0.6408 S22: -0.0246 S23: -0.6736 REMARK 3 S31: 0.1307 S32: 0.4339 S33: 0.1175 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 306 A 321 REMARK 3 ORIGIN FOR THE GROUP (A): 94.7360 118.8200 -56.7740 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.3113 REMARK 3 T33: 0.1196 T12: 0.0202 REMARK 3 T13: 0.1052 T23: 0.3706 REMARK 3 L TENSOR REMARK 3 L11: 9.1982 L22: 4.1623 REMARK 3 L33: 8.0670 L12: -2.2647 REMARK 3 L13: -4.6011 L23: 4.9091 REMARK 3 S TENSOR REMARK 3 S11: 0.2600 S12: 1.0189 S13: 1.0063 REMARK 3 S21: -0.6224 S22: 0.0220 S23: -0.3369 REMARK 3 S31: -1.1488 S32: 0.1210 S33: -0.2819 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 322 A 353 REMARK 3 ORIGIN FOR THE GROUP (A): 86.9730 115.1770 -50.0310 REMARK 3 T TENSOR REMARK 3 T11: -0.0933 T22: 0.1434 REMARK 3 T33: -0.0136 T12: 0.0567 REMARK 3 T13: 0.0638 T23: 0.2020 REMARK 3 L TENSOR REMARK 3 L11: 3.9421 L22: 3.1246 REMARK 3 L33: 5.1787 L12: 0.0241 REMARK 3 L13: 1.1117 L23: -0.9228 REMARK 3 S TENSOR REMARK 3 S11: 0.1306 S12: 0.3207 S13: 0.8346 REMARK 3 S21: -0.4010 S22: 0.0380 S23: -0.1331 REMARK 3 S31: -0.2724 S32: -0.2259 S33: -0.1685 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 354 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 92.0350 110.1380 -35.0730 REMARK 3 T TENSOR REMARK 3 T11: -0.2377 T22: -0.0450 REMARK 3 T33: -0.1160 T12: -0.0095 REMARK 3 T13: -0.0172 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 2.8782 L22: 0.2278 REMARK 3 L33: 2.0254 L12: -0.3523 REMARK 3 L13: 0.1729 L23: 0.5889 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: 0.3717 S13: 0.5011 REMARK 3 S21: -0.1231 S22: -0.0477 S23: -0.1098 REMARK 3 S31: -0.2465 S32: 0.1849 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 379 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): 102.5540 117.3660 -22.0230 REMARK 3 T TENSOR REMARK 3 T11: -0.2721 T22: 0.0369 REMARK 3 T33: 0.0677 T12: -0.0650 REMARK 3 T13: -0.0006 T23: -0.1199 REMARK 3 L TENSOR REMARK 3 L11: 5.4114 L22: 6.4414 REMARK 3 L33: 4.1647 L12: 2.8998 REMARK 3 L13: -2.0539 L23: -1.3347 REMARK 3 S TENSOR REMARK 3 S11: 0.3777 S12: -0.1841 S13: 0.6930 REMARK 3 S21: 0.0734 S22: -0.1440 S23: -0.3277 REMARK 3 S31: -0.5356 S32: 0.7012 S33: -0.2337 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 398 A 409 REMARK 3 ORIGIN FOR THE GROUP (A): 89.9590 92.9190 -16.0240 REMARK 3 T TENSOR REMARK 3 T11: -0.1435 T22: -0.0021 REMARK 3 T33: -0.2148 T12: 0.0252 REMARK 3 T13: -0.0665 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 4.9257 L22: 15.8683 REMARK 3 L33: 1.5117 L12: 5.5076 REMARK 3 L13: 1.7386 L23: -0.8179 REMARK 3 S TENSOR REMARK 3 S11: 0.3766 S12: -0.3064 S13: -0.4686 REMARK 3 S21: 0.3059 S22: -0.3963 S23: -0.7977 REMARK 3 S31: 0.3924 S32: 0.2608 S33: 0.0196 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 410 A 456 REMARK 3 ORIGIN FOR THE GROUP (A): 91.8460 113.0980 -23.3320 REMARK 3 T TENSOR REMARK 3 T11: -0.2797 T22: -0.0934 REMARK 3 T33: -0.1145 T12: -0.0174 REMARK 3 T13: 0.0045 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 3.2780 L22: 1.3476 REMARK 3 L33: 2.2576 L12: 0.8079 REMARK 3 L13: -0.0952 L23: 0.0370 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: -0.0757 S13: 0.5726 REMARK 3 S21: -0.0180 S22: 0.0227 S23: -0.0801 REMARK 3 S31: -0.2079 S32: 0.0487 S33: -0.1028 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 457 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): 86.5300 109.8550 -14.8720 REMARK 3 T TENSOR REMARK 3 T11: -0.2330 T22: -0.0125 REMARK 3 T33: -0.1854 T12: -0.0130 REMARK 3 T13: -0.0246 T23: -0.0643 REMARK 3 L TENSOR REMARK 3 L11: 4.6258 L22: 1.9959 REMARK 3 L33: 1.8092 L12: 1.8416 REMARK 3 L13: 0.7867 L23: 1.7677 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: -0.5034 S13: 0.3811 REMARK 3 S21: 0.2363 S22: -0.0871 S23: 0.0144 REMARK 3 S31: -0.1235 S32: -0.0955 S33: -0.0851 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 478 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): 102.4020 110.9360 -11.1730 REMARK 3 T TENSOR REMARK 3 T11: -0.1118 T22: 0.1311 REMARK 3 T33: -0.0651 T12: -0.0292 REMARK 3 T13: -0.1060 T23: -0.1559 REMARK 3 L TENSOR REMARK 3 L11: 19.9386 L22: 8.6381 REMARK 3 L33: 17.9963 L12: -5.1973 REMARK 3 L13: 2.1749 L23: 1.6239 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: -1.4630 S13: 0.0943 REMARK 3 S21: 0.9780 S22: -0.2806 S23: -0.8972 REMARK 3 S31: 0.5080 S32: 0.0301 S33: 0.2696 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 91.5640 102.3780 -50.1240 REMARK 3 T TENSOR REMARK 3 T11: -0.0662 T22: 0.2142 REMARK 3 T33: -0.2268 T12: 0.0854 REMARK 3 T13: -0.0276 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 2.5126 L22: 2.6178 REMARK 3 L33: 0.9151 L12: 0.6985 REMARK 3 L13: -0.1955 L23: -1.5311 REMARK 3 S TENSOR REMARK 3 S11: 0.5973 S12: 0.6048 S13: 0.3117 REMARK 3 S21: -0.0625 S22: -0.0827 S23: 0.1976 REMARK 3 S31: -0.0690 S32: 1.6407 S33: -0.5147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5417 REMARK 200 MONOCHROMATOR : MAR MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 5.230 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 22% PEG 6000, 2% ETHYLENE REMARK 280 GLYCOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 55.25350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.01250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.00625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.25350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.01875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 156.01875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.25350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.00625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 55.25350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.01250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.25350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.01250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.25350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 156.01875 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 52.00625 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.25350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 52.00625 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 156.01875 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.25350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.25350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 104.01250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 165.76050 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -52.00625 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 VAL A 486 REMARK 465 THR A 487 REMARK 465 GLY A 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 302 O ASN A 305 1.97 REMARK 500 CD ARG A 75 O HOH A 681 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ3 TRP A 108 CZ3 TRP A 108 16664 0.90 REMARK 500 CE3 TRP A 108 CE3 TRP A 108 16664 1.10 REMARK 500 CE3 TRP A 108 CZ3 TRP A 108 16664 1.11 REMARK 500 CZ3 TRP A 108 CH2 TRP A 108 16664 1.54 REMARK 500 CD2 TRP A 108 CZ3 TRP A 108 16664 1.79 REMARK 500 CE3 TRP A 108 CH2 TRP A 108 16664 1.83 REMARK 500 CD2 TRP A 108 CE3 TRP A 108 16664 1.87 REMARK 500 CZ2 TRP A 108 CZ3 TRP A 108 16664 2.10 REMARK 500 CE2 TRP A 108 CZ3 TRP A 108 16664 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 6 CB SER A 6 OG 0.199 REMARK 500 PHE A 7 CG PHE A 7 CD2 0.092 REMARK 500 TRP A 108 CB TRP A 108 CG -0.147 REMARK 500 TRP A 108 CG TRP A 108 CD1 0.135 REMARK 500 SER A 317 CB SER A 317 OG 0.106 REMARK 500 GLU A 402 CD GLU A 402 OE1 0.077 REMARK 500 GLN A 412 N GLN A 412 CA 0.196 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 62 CD - CE - NZ ANGL. DEV. = 17.6 DEGREES REMARK 500 PRO A 87 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 VAL A 327 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 348 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLN A 412 C - N - CA ANGL. DEV. = -18.2 DEGREES REMARK 500 LEU A 430 CB - CG - CD2 ANGL. DEV. = 11.5 DEGREES REMARK 500 ILE A 448 CG1 - CB - CG2 ANGL. DEV. = -15.9 DEGREES REMARK 500 VAL A 472 CG1 - CB - CG2 ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 5 -133.83 -104.17 REMARK 500 VAL A 56 23.22 -144.89 REMARK 500 PRO A 87 95.82 -66.40 REMARK 500 GLN A 164 -5.31 91.22 REMARK 500 SER A 217 -129.78 -140.94 REMARK 500 HIS A 250 158.05 179.81 REMARK 500 ASN A 257 -8.77 79.54 REMARK 500 LYS A 304 -73.81 -34.67 REMARK 500 THR A 316 -145.86 -64.40 REMARK 500 PHE A 367 49.88 -92.25 REMARK 500 GLN A 412 -19.22 72.32 REMARK 500 GLN A 425 64.61 70.60 REMARK 500 HIS A 475 -19.94 -157.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 85 GLN A 86 -138.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE WAS REMARK 600 USED IN THE EXPERIMENT, HOWEVER NO DENSITY WAS REMARK 600 OBSERVED FOR THE NICOTINAMIDE DUE TO REDOX STATE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA7 A 501 DBREF 3DGZ A 1 488 UNP Q9JLT4 TRXR2_MOUSE 34 521 SEQRES 1 A 488 ALA GLY GLY GLN GLN SER PHE ASP LEU LEU VAL ILE GLY SEQRES 2 A 488 GLY GLY SER GLY GLY LEU ALA CYS ALA LYS GLU ALA ALA SEQRES 3 A 488 GLN LEU GLY LYS LYS VAL ALA VAL ALA ASP TYR VAL GLU SEQRES 4 A 488 PRO SER PRO ARG GLY THR LYS TRP GLY LEU GLY GLY THR SEQRES 5 A 488 CYS VAL ASN VAL GLY CYS ILE PRO LYS LYS LEU MET HIS SEQRES 6 A 488 GLN ALA ALA LEU LEU GLY GLY MET ILE ARG ASP ALA HIS SEQRES 7 A 488 HIS TYR GLY TRP GLU VAL ALA GLN PRO VAL GLN HIS ASN SEQRES 8 A 488 TRP LYS THR MET ALA GLU ALA VAL GLN ASN HIS VAL LYS SEQRES 9 A 488 SER LEU ASN TRP GLY HIS ARG VAL GLN LEU GLN ASP ARG SEQRES 10 A 488 LYS VAL LYS TYR PHE ASN ILE LYS ALA SER PHE VAL ASP SEQRES 11 A 488 GLU HIS THR VAL ARG GLY VAL ASP LYS GLY GLY LYS ALA SEQRES 12 A 488 THR LEU LEU SER ALA GLU HIS ILE VAL ILE ALA THR GLY SEQRES 13 A 488 GLY ARG PRO ARG TYR PRO THR GLN VAL LYS GLY ALA LEU SEQRES 14 A 488 GLU TYR GLY ILE THR SER ASP ASP ILE PHE TRP LEU LYS SEQRES 15 A 488 GLU SER PRO GLY LYS THR LEU VAL VAL GLY ALA SER TYR SEQRES 16 A 488 VAL ALA LEU GLU CYS ALA GLY PHE LEU THR GLY ILE GLY SEQRES 17 A 488 LEU ASP THR THR VAL MET MET ARG SER ILE PRO LEU ARG SEQRES 18 A 488 GLY PHE ASP GLN GLN MET SER SER LEU VAL THR GLU HIS SEQRES 19 A 488 MET GLU SER HIS GLY THR GLN PHE LEU LYS GLY CYS VAL SEQRES 20 A 488 PRO SER HIS ILE LYS LYS LEU PRO THR ASN GLN LEU GLN SEQRES 21 A 488 VAL THR TRP GLU ASP HIS ALA SER GLY LYS GLU ASP THR SEQRES 22 A 488 GLY THR PHE ASP THR VAL LEU TRP ALA ILE GLY ARG VAL SEQRES 23 A 488 PRO GLU THR ARG THR LEU ASN LEU GLU LYS ALA GLY ILE SEQRES 24 A 488 SER THR ASN PRO LYS ASN GLN LYS ILE ILE VAL ASP ALA SEQRES 25 A 488 GLN GLU ALA THR SER VAL PRO HIS ILE TYR ALA ILE GLY SEQRES 26 A 488 ASP VAL ALA GLU GLY ARG PRO GLU LEU THR PRO THR ALA SEQRES 27 A 488 ILE LYS ALA GLY LYS LEU LEU ALA GLN ARG LEU PHE GLY SEQRES 28 A 488 LYS SER SER THR LEU MET ASP TYR SER ASN VAL PRO THR SEQRES 29 A 488 THR VAL PHE THR PRO LEU GLU TYR GLY CYS VAL GLY LEU SEQRES 30 A 488 SER GLU GLU GLU ALA VAL ALA LEU HIS GLY GLN GLU HIS SEQRES 31 A 488 VAL GLU VAL TYR HIS ALA TYR TYR LYS PRO LEU GLU PHE SEQRES 32 A 488 THR VAL ALA ASP ARG ASP ALA SER GLN CYS TYR ILE LYS SEQRES 33 A 488 MET VAL CYS MET ARG GLU PRO PRO GLN LEU VAL LEU GLY SEQRES 34 A 488 LEU HIS PHE LEU GLY PRO ASN ALA GLY GLU VAL THR GLN SEQRES 35 A 488 GLY PHE ALA LEU GLY ILE LYS CYS GLY ALA SER TYR ALA SEQRES 36 A 488 GLN VAL MET GLN THR VAL GLY ILE HIS PRO THR CYS SER SEQRES 37 A 488 GLU GLU VAL VAL LYS LEU HIS ILE SER LYS ARG SER GLY SEQRES 38 A 488 LEU GLU PRO THR VAL THR GLY HET FAD A 500 53 HET NA7 A 501 39 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NA7 [(2R,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3-HYDROXY-4- HETNAM 2 NA7 (PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL [(2R,3S,4S)- HETNAM 3 NA7 3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETNAM 4 NA7 DIPHOSPHATE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NA7 C15 H24 N5 O16 P3 FORMUL 4 HOH *189(H2 O) HELIX 1 1 GLY A 15 LEU A 28 1 14 HELIX 2 2 GLY A 51 GLY A 57 1 7 HELIX 3 3 GLY A 57 TYR A 80 1 24 HELIX 4 4 ASN A 91 ARG A 117 1 27 HELIX 5 5 GLY A 167 GLY A 172 1 6 HELIX 6 6 THR A 174 PHE A 179 1 6 HELIX 7 7 SER A 194 ILE A 207 1 14 HELIX 8 8 ASP A 224 HIS A 238 1 15 HELIX 9 9 THR A 289 GLY A 298 5 10 HELIX 10 10 GLY A 325 ALA A 328 5 4 HELIX 11 11 LEU A 334 GLY A 351 1 18 HELIX 12 12 SER A 378 GLY A 387 1 10 HELIX 13 13 PRO A 400 ALA A 406 1 7 HELIX 14 14 ASN A 436 CYS A 450 1 15 HELIX 15 15 SER A 453 GLN A 459 1 7 HELIX 16 16 SER A 468 LYS A 473 1 6 SHEET 1 A 6 LYS A 120 PHE A 122 0 SHEET 2 A 6 VAL A 32 ALA A 35 1 N VAL A 34 O PHE A 122 SHEET 3 A 6 SER A 6 ILE A 12 1 N VAL A 11 O ALA A 35 SHEET 4 A 6 ALA A 143 ILE A 153 1 O VAL A 152 N ILE A 12 SHEET 5 A 6 THR A 133 VAL A 137 -1 N VAL A 134 O LEU A 146 SHEET 6 A 6 LYS A 125 PHE A 128 -1 N SER A 127 O ARG A 135 SHEET 1 B 5 LYS A 120 PHE A 122 0 SHEET 2 B 5 VAL A 32 ALA A 35 1 N VAL A 34 O PHE A 122 SHEET 3 B 5 SER A 6 ILE A 12 1 N VAL A 11 O ALA A 35 SHEET 4 B 5 ALA A 143 ILE A 153 1 O VAL A 152 N ILE A 12 SHEET 5 B 5 ILE A 321 ALA A 323 1 O TYR A 322 N ILE A 153 SHEET 1 C 2 GLY A 157 PRO A 159 0 SHEET 2 C 2 ARG A 285 PRO A 287 -1 O VAL A 286 N ARG A 158 SHEET 1 D 4 GLN A 241 LYS A 244 0 SHEET 2 D 4 THR A 211 MET A 215 1 N VAL A 213 O LEU A 243 SHEET 3 D 4 THR A 188 VAL A 191 1 N VAL A 190 O THR A 212 SHEET 4 D 4 THR A 278 TRP A 281 1 O LEU A 280 N VAL A 191 SHEET 1 E 3 CYS A 246 LYS A 253 0 SHEET 2 E 3 LEU A 259 ASP A 265 -1 O GLN A 260 N LYS A 252 SHEET 3 E 3 GLU A 271 PHE A 276 -1 O GLY A 274 N VAL A 261 SHEET 1 F 6 THR A 364 VAL A 366 0 SHEET 2 F 6 GLU A 371 GLY A 376 -1 O TYR A 372 N VAL A 366 SHEET 3 F 6 VAL A 427 GLY A 434 -1 O PHE A 432 N GLY A 373 SHEET 4 F 6 TYR A 414 MET A 420 -1 N VAL A 418 O LEU A 428 SHEET 5 F 6 VAL A 391 TYR A 397 -1 N GLU A 392 O CYS A 419 SHEET 6 F 6 ILE A 476 SER A 477 -1 O ILE A 476 N HIS A 395 SSBOND 1 CYS A 53 CYS A 58 1555 1555 2.11 CISPEP 1 PRO A 423 PRO A 424 0 18.76 CISPEP 2 HIS A 464 PRO A 465 0 -3.66 SITE 1 AC1 33 GLY A 13 GLY A 15 SER A 16 GLY A 17 SITE 2 AC1 33 ALA A 35 ASP A 36 TYR A 37 GLY A 51 SITE 3 AC1 33 THR A 52 CYS A 53 VAL A 56 GLY A 57 SITE 4 AC1 33 CYS A 58 LYS A 61 ILE A 124 ALA A 126 SITE 5 AC1 33 ALA A 154 THR A 155 GLY A 156 TYR A 195 SITE 6 AC1 33 ARG A 285 LEU A 292 GLY A 325 ASP A 326 SITE 7 AC1 33 GLU A 333 LEU A 334 THR A 335 PRO A 336 SITE 8 AC1 33 HIS A 464 HOH A 511 HOH A 513 HOH A 515 SITE 9 AC1 33 HOH A 611 SITE 1 AC2 15 ARG A 160 GLY A 192 ALA A 193 SER A 194 SITE 2 AC2 15 ARG A 216 SER A 217 ARG A 221 ALA A 282 SITE 3 AC2 15 ILE A 283 GLY A 284 ARG A 285 GLU A 333 SITE 4 AC2 15 HOH A 551 HOH A 582 HOH A 654 CRYST1 110.507 110.507 208.025 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004807 0.00000