HEADER CYTOKINE/CYTOKINE RECEPTOR 19-JUN-08 3DI2 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN INTERLEUKIN-7 WITH TITLE 2 UNGLYCOSYLATED HUMAN INTERLEUKIN-7 RECEPTOR ALPHA ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-7; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 26 TO 177; COMPND 5 SYNONYM: IL-7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INTERLEUKIN-7 RECEPTOR SUBUNIT ALPHA; COMPND 10 CHAIN: B, D; COMPND 11 FRAGMENT: UNP RESIDUES 21 TO 239 (LIGAND BINDING ECTODOMAIN); COMPND 12 SYNONYM: IL-7R-ALPHA, CD127 ANTIGEN, CDW127; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RP; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: IL7R; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RP; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS INTERLEUKIN, CYTOKINE, CYTOKINE RECEPTOR, ECTODOMAIN, GLYCOPROTEIN, KEYWDS 2 GROWTH FACTOR, SECRETED, ALTERNATIVE SPLICING, DISEASE MUTATION, KEYWDS 3 MEMBRANE, PHOSPHOPROTEIN, POLYMORPHISM, RECEPTOR, SCID, KEYWDS 4 TRANSMEMBRANE, CYTOKINE-CYTOKINE RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.A.MCELROY,J.A.DOHM,S.T.R.WALSH REVDAT 2 20-OCT-21 3DI2 1 REMARK SEQADV REVDAT 1 27-JAN-09 3DI2 0 JRNL AUTH C.A.MCELROY,J.A.DOHM,S.T.WALSH JRNL TITL STRUCTURAL AND BIOPHYSICAL STUDIES OF THE HUMAN JRNL TITL 2 IL-7/IL-7RALPHA COMPLEX. JRNL REF STRUCTURE V. 17 54 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19141282 JRNL DOI 10.1016/J.STR.2008.10.019 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 69.6 REMARK 3 NUMBER OF REFLECTIONS : 16902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1335 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.03600 REMARK 3 B22 (A**2) : -5.38600 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.33200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.416 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.534 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.770 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.879 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 34.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : 1PE_XPLOR.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : 1PE_XPLOR.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97932 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 8000, 0.1M MES, 0.2 M REMARK 280 CALCIUM ACETATE, PH 6.0, SITTING DROP, TEMPERATURE 292K, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.51050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 ASP A 1 REMARK 465 CYS A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 GLU A 5 REMARK 465 GLY A 6 REMARK 465 LYS A 7 REMARK 465 CYS A 92 REMARK 465 THR A 93 REMARK 465 GLY A 94 REMARK 465 GLN A 95 REMARK 465 VAL A 96 REMARK 465 LYS A 97 REMARK 465 GLY A 98 REMARK 465 ARG A 99 REMARK 465 LYS A 100 REMARK 465 PRO A 101 REMARK 465 ALA A 102 REMARK 465 ALA A 103 REMARK 465 LEU A 104 REMARK 465 GLY A 105 REMARK 465 ALA A 106 REMARK 465 ALA A 107 REMARK 465 GLN A 108 REMARK 465 PRO A 109 REMARK 465 THR A 110 REMARK 465 LYS A 111 REMARK 465 SER A 112 REMARK 465 LEU A 113 REMARK 465 GLU A 114 REMARK 465 GLU A 115 REMARK 465 ASN A 116 REMARK 465 LYS A 117 REMARK 465 SER A 118 REMARK 465 LEU A 119 REMARK 465 LYS A 120 REMARK 465 GLU A 121 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 GLU B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 TYR B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 ASN B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 ASP B 12 REMARK 465 ALA B 13 REMARK 465 GLU B 14 REMARK 465 LEU B 15 REMARK 465 ASP B 16 REMARK 465 ASN B 212 REMARK 465 ASN B 213 REMARK 465 SER B 214 REMARK 465 SER B 215 REMARK 465 GLY B 216 REMARK 465 GLU B 217 REMARK 465 MET B 218 REMARK 465 ASP B 219 REMARK 465 MET C -1 REMARK 465 GLY C 0 REMARK 465 ASP C 1 REMARK 465 CYS C 2 REMARK 465 ASP C 3 REMARK 465 ILE C 4 REMARK 465 GLU C 5 REMARK 465 GLY C 6 REMARK 465 LYS C 7 REMARK 465 ASN C 91 REMARK 465 CYS C 92 REMARK 465 THR C 93 REMARK 465 GLY C 94 REMARK 465 GLN C 95 REMARK 465 VAL C 96 REMARK 465 LYS C 97 REMARK 465 GLY C 98 REMARK 465 ARG C 99 REMARK 465 LYS C 100 REMARK 465 PRO C 101 REMARK 465 ALA C 102 REMARK 465 ALA C 103 REMARK 465 LEU C 104 REMARK 465 GLY C 105 REMARK 465 ALA C 106 REMARK 465 ALA C 107 REMARK 465 GLN C 108 REMARK 465 PRO C 109 REMARK 465 THR C 110 REMARK 465 LYS C 111 REMARK 465 SER C 112 REMARK 465 LEU C 113 REMARK 465 GLU C 114 REMARK 465 GLU C 115 REMARK 465 ASN C 116 REMARK 465 LYS C 117 REMARK 465 SER C 118 REMARK 465 LEU C 119 REMARK 465 LYS C 120 REMARK 465 GLU C 121 REMARK 465 GLN C 122 REMARK 465 LYS C 150 REMARK 465 GLU C 151 REMARK 465 HIS C 152 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 GLU D 1 REMARK 465 SER D 2 REMARK 465 GLY D 3 REMARK 465 TYR D 4 REMARK 465 ALA D 5 REMARK 465 GLN D 6 REMARK 465 ASN D 7 REMARK 465 GLY D 8 REMARK 465 ASP D 9 REMARK 465 LEU D 10 REMARK 465 GLU D 11 REMARK 465 ASP D 12 REMARK 465 ALA D 13 REMARK 465 GLU D 210 REMARK 465 ILE D 211 REMARK 465 ASN D 212 REMARK 465 ASN D 213 REMARK 465 SER D 214 REMARK 465 SER D 215 REMARK 465 GLY D 216 REMARK 465 GLU D 217 REMARK 465 MET D 218 REMARK 465 ASP D 219 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 28 CD CE NZ REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ILE A 30 CG1 CD1 REMARK 470 SER A 32 OG REMARK 470 LEU A 35 CD1 CD2 REMARK 470 ASN A 37 OD1 ND2 REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 MET A 54 CG SD CE REMARK 470 LYS A 68 CD CE NZ REMARK 470 MET A 69 CG SD CE REMARK 470 ASN A 70 CG OD1 ND2 REMARK 470 THR A 72 OG1 CG2 REMARK 470 ASN A 91 CG OD1 ND2 REMARK 470 GLN A 122 CD OE1 NE2 REMARK 470 LYS A 124 CD CE NZ REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 HIS A 152 ND1 CD2 CE1 NE2 REMARK 470 ASN B 29 OD1 ND2 REMARK 470 ASN B 48 CG OD1 ND2 REMARK 470 LYS B 61 CD CE NZ REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 VAL B 91 CG1 CG2 REMARK 470 GLU B 93 CD OE1 OE2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 SER B 95 OG REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 ASN B 156 CG OD1 ND2 REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 GLN B 176 CD OE1 NE2 REMARK 470 ILE B 211 CG1 CG2 CD1 REMARK 470 LYS C 10 CG CD CE NZ REMARK 470 GLU C 13 CG CD OE1 OE2 REMARK 470 LYS C 28 CD CE NZ REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 ILE C 30 CG1 CD1 REMARK 470 SER C 32 OG REMARK 470 ASN C 33 CG OD1 ND2 REMARK 470 LEU C 35 CG CD1 CD2 REMARK 470 ASN C 37 OD1 ND2 REMARK 470 GLU C 38 CD OE1 OE2 REMARK 470 ARG C 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 51 CG CD CE NZ REMARK 470 MET C 54 CG SD CE REMARK 470 ARG C 58 CD NE CZ NH1 NH2 REMARK 470 ARG C 61 CD NE CZ NH1 NH2 REMARK 470 LYS C 68 CG CD CE NZ REMARK 470 MET C 69 CG SD CE REMARK 470 ASN C 70 CG OD1 ND2 REMARK 470 LYS C 123 CG CD CE NZ REMARK 470 LYS C 124 CG CD CE NZ REMARK 470 LYS C 144 CD CE NZ REMARK 470 ILE C 145 CG2 CD1 REMARK 470 MET C 147 CG SD CE REMARK 470 THR C 149 OG1 CG2 REMARK 470 GLU D 14 CG CD OE1 OE2 REMARK 470 LEU D 15 CG CD1 CD2 REMARK 470 ASP D 16 CG OD1 OD2 REMARK 470 ASN D 29 OD1 ND2 REMARK 470 ASN D 48 CG OD1 ND2 REMARK 470 LYS D 61 CD CE NZ REMARK 470 GLU D 70 CG CD OE1 OE2 REMARK 470 ASN D 86 CG OD1 ND2 REMARK 470 LYS D 90 CG CD CE NZ REMARK 470 VAL D 91 CG1 CG2 REMARK 470 GLU D 93 CD OE1 OE2 REMARK 470 LYS D 94 CG CD CE NZ REMARK 470 SER D 95 OG REMARK 470 LYS D 100 CG CD CE NZ REMARK 470 TYR D 119 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 121 CG CD OE1 OE2 REMARK 470 PHE D 126 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 141 CD CE NZ REMARK 470 LYS D 153 CG CD CE NZ REMARK 470 ASN D 156 CG OD1 ND2 REMARK 470 LYS D 157 CG CD CE NZ REMARK 470 GLN D 172 CD OE1 NE2 REMARK 470 LYS D 174 CD CE NZ REMARK 470 GLN D 176 CD OE1 NE2 REMARK 470 MET D 180 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 32 34.99 -64.81 REMARK 500 ASN A 33 -11.93 -149.23 REMARK 500 LEU A 35 102.67 -54.56 REMARK 500 ASN A 37 102.04 -32.91 REMARK 500 GLU A 38 144.77 -33.92 REMARK 500 ALA A 49 126.54 -32.39 REMARK 500 LYS A 51 15.22 -178.59 REMARK 500 GLN A 65 -3.97 -58.50 REMARK 500 SER A 71 56.35 -62.98 REMARK 500 LEU A 90 -72.21 -109.41 REMARK 500 LEU A 146 -72.28 -73.39 REMARK 500 MET A 147 24.02 -62.50 REMARK 500 GLU A 151 -70.90 -112.75 REMARK 500 THR B 46 58.82 -110.14 REMARK 500 ASN B 48 -13.90 -145.68 REMARK 500 VAL B 58 -80.38 -116.07 REMARK 500 GLN B 69 -109.58 90.20 REMARK 500 GLU B 93 1.04 -161.94 REMARK 500 LEU B 103 -14.95 -41.16 REMARK 500 SER B 116 116.17 -170.68 REMARK 500 TYR B 139 -78.55 -96.88 REMARK 500 LYS B 157 78.43 -109.19 REMARK 500 ALA B 178 75.38 34.13 REMARK 500 ASP B 190 -5.13 -140.98 REMARK 500 HIS B 191 -109.29 -106.20 REMARK 500 SER C 32 42.71 -65.28 REMARK 500 ASN C 33 -6.61 -161.47 REMARK 500 LEU C 35 102.81 -53.69 REMARK 500 ASN C 37 105.56 -31.25 REMARK 500 GLU C 38 128.55 -35.72 REMARK 500 ALA C 49 127.22 -37.45 REMARK 500 ASN C 50 69.28 39.92 REMARK 500 LYS C 51 13.79 -179.81 REMARK 500 SER C 71 57.97 -65.19 REMARK 500 LEU C 146 -74.71 -72.82 REMARK 500 MET C 147 18.47 -59.96 REMARK 500 LEU D 15 29.78 -61.44 REMARK 500 THR D 46 57.94 -110.07 REMARK 500 ASN D 48 -11.54 -146.14 REMARK 500 VAL D 58 -82.43 -116.28 REMARK 500 GLN D 69 -107.25 86.95 REMARK 500 GLU D 93 1.03 -162.96 REMARK 500 LEU D 103 -17.85 -38.26 REMARK 500 SER D 116 115.37 -172.51 REMARK 500 TYR D 139 -81.32 -94.64 REMARK 500 ASN D 156 1.92 57.52 REMARK 500 LYS D 157 77.35 -108.24 REMARK 500 ALA D 178 75.60 37.58 REMARK 500 HIS D 191 -110.29 -107.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DI3 RELATED DB: PDB DBREF 3DI2 A 1 152 UNP P13232 IL7_HUMAN 26 177 DBREF 3DI2 B 1 219 UNP P16871 IL7RA_HUMAN 21 239 DBREF 3DI2 C 1 152 UNP P13232 IL7_HUMAN 26 177 DBREF 3DI2 D 1 219 UNP P16871 IL7RA_HUMAN 21 239 SEQADV 3DI2 MET A -1 UNP P13232 EXPRESSION TAG SEQADV 3DI2 GLY A 0 UNP P13232 EXPRESSION TAG SEQADV 3DI2 ALA A 106 UNP P13232 GLU 131 ENGINEERED MUTATION SEQADV 3DI2 GLY B -3 UNP P16871 EXPRESSION TAG SEQADV 3DI2 SER B -2 UNP P16871 EXPRESSION TAG SEQADV 3DI2 HIS B -1 UNP P16871 EXPRESSION TAG SEQADV 3DI2 MET B 0 UNP P16871 EXPRESSION TAG SEQADV 3DI2 VAL B 118 UNP P16871 ILE 138 ENGINEERED MUTATION SEQADV 3DI2 MET C -1 UNP P13232 EXPRESSION TAG SEQADV 3DI2 GLY C 0 UNP P13232 EXPRESSION TAG SEQADV 3DI2 ALA C 106 UNP P13232 GLU 131 ENGINEERED MUTATION SEQADV 3DI2 GLY D -3 UNP P16871 EXPRESSION TAG SEQADV 3DI2 SER D -2 UNP P16871 EXPRESSION TAG SEQADV 3DI2 HIS D -1 UNP P16871 EXPRESSION TAG SEQADV 3DI2 MET D 0 UNP P16871 EXPRESSION TAG SEQADV 3DI2 VAL D 118 UNP P16871 ILE 138 ENGINEERED MUTATION SEQRES 1 A 154 MET GLY ASP CYS ASP ILE GLU GLY LYS ASP GLY LYS GLN SEQRES 2 A 154 TYR GLU SER VAL LEU MET VAL SER ILE ASP GLN LEU LEU SEQRES 3 A 154 ASP SER MET LYS GLU ILE GLY SER ASN CYS LEU ASN ASN SEQRES 4 A 154 GLU PHE ASN PHE PHE LYS ARG HIS ILE CYS ASP ALA ASN SEQRES 5 A 154 LYS GLU GLY MET PHE LEU PHE ARG ALA ALA ARG LYS LEU SEQRES 6 A 154 ARG GLN PHE LEU LYS MET ASN SER THR GLY ASP PHE ASP SEQRES 7 A 154 LEU HIS LEU LEU LYS VAL SER GLU GLY THR THR ILE LEU SEQRES 8 A 154 LEU ASN CYS THR GLY GLN VAL LYS GLY ARG LYS PRO ALA SEQRES 9 A 154 ALA LEU GLY ALA ALA GLN PRO THR LYS SER LEU GLU GLU SEQRES 10 A 154 ASN LYS SER LEU LYS GLU GLN LYS LYS LEU ASN ASP LEU SEQRES 11 A 154 CYS PHE LEU LYS ARG LEU LEU GLN GLU ILE LYS THR CYS SEQRES 12 A 154 TRP ASN LYS ILE LEU MET GLY THR LYS GLU HIS SEQRES 1 B 223 GLY SER HIS MET GLU SER GLY TYR ALA GLN ASN GLY ASP SEQRES 2 B 223 LEU GLU ASP ALA GLU LEU ASP ASP TYR SER PHE SER CYS SEQRES 3 B 223 TYR SER GLN LEU GLU VAL ASN GLY SER GLN HIS SER LEU SEQRES 4 B 223 THR CYS ALA PHE GLU ASP PRO ASP VAL ASN THR THR ASN SEQRES 5 B 223 LEU GLU PHE GLU ILE CYS GLY ALA LEU VAL GLU VAL LYS SEQRES 6 B 223 CYS LEU ASN PHE ARG LYS LEU GLN GLU ILE TYR PHE ILE SEQRES 7 B 223 GLU THR LYS LYS PHE LEU LEU ILE GLY LYS SER ASN ILE SEQRES 8 B 223 CYS VAL LYS VAL GLY GLU LYS SER LEU THR CYS LYS LYS SEQRES 9 B 223 ILE ASP LEU THR THR ILE VAL LYS PRO GLU ALA PRO PHE SEQRES 10 B 223 ASP LEU SER VAL VAL TYR ARG GLU GLY ALA ASN ASP PHE SEQRES 11 B 223 VAL VAL THR PHE ASN THR SER HIS LEU GLN LYS LYS TYR SEQRES 12 B 223 VAL LYS VAL LEU MET HIS ASP VAL ALA TYR ARG GLN GLU SEQRES 13 B 223 LYS ASP GLU ASN LYS TRP THR HIS VAL ASN LEU SER SER SEQRES 14 B 223 THR LYS LEU THR LEU LEU GLN ARG LYS LEU GLN PRO ALA SEQRES 15 B 223 ALA MET TYR GLU ILE LYS VAL ARG SER ILE PRO ASP HIS SEQRES 16 B 223 TYR PHE LYS GLY PHE TRP SER GLU TRP SER PRO SER TYR SEQRES 17 B 223 TYR PHE ARG THR PRO GLU ILE ASN ASN SER SER GLY GLU SEQRES 18 B 223 MET ASP SEQRES 1 C 154 MET GLY ASP CYS ASP ILE GLU GLY LYS ASP GLY LYS GLN SEQRES 2 C 154 TYR GLU SER VAL LEU MET VAL SER ILE ASP GLN LEU LEU SEQRES 3 C 154 ASP SER MET LYS GLU ILE GLY SER ASN CYS LEU ASN ASN SEQRES 4 C 154 GLU PHE ASN PHE PHE LYS ARG HIS ILE CYS ASP ALA ASN SEQRES 5 C 154 LYS GLU GLY MET PHE LEU PHE ARG ALA ALA ARG LYS LEU SEQRES 6 C 154 ARG GLN PHE LEU LYS MET ASN SER THR GLY ASP PHE ASP SEQRES 7 C 154 LEU HIS LEU LEU LYS VAL SER GLU GLY THR THR ILE LEU SEQRES 8 C 154 LEU ASN CYS THR GLY GLN VAL LYS GLY ARG LYS PRO ALA SEQRES 9 C 154 ALA LEU GLY ALA ALA GLN PRO THR LYS SER LEU GLU GLU SEQRES 10 C 154 ASN LYS SER LEU LYS GLU GLN LYS LYS LEU ASN ASP LEU SEQRES 11 C 154 CYS PHE LEU LYS ARG LEU LEU GLN GLU ILE LYS THR CYS SEQRES 12 C 154 TRP ASN LYS ILE LEU MET GLY THR LYS GLU HIS SEQRES 1 D 223 GLY SER HIS MET GLU SER GLY TYR ALA GLN ASN GLY ASP SEQRES 2 D 223 LEU GLU ASP ALA GLU LEU ASP ASP TYR SER PHE SER CYS SEQRES 3 D 223 TYR SER GLN LEU GLU VAL ASN GLY SER GLN HIS SER LEU SEQRES 4 D 223 THR CYS ALA PHE GLU ASP PRO ASP VAL ASN THR THR ASN SEQRES 5 D 223 LEU GLU PHE GLU ILE CYS GLY ALA LEU VAL GLU VAL LYS SEQRES 6 D 223 CYS LEU ASN PHE ARG LYS LEU GLN GLU ILE TYR PHE ILE SEQRES 7 D 223 GLU THR LYS LYS PHE LEU LEU ILE GLY LYS SER ASN ILE SEQRES 8 D 223 CYS VAL LYS VAL GLY GLU LYS SER LEU THR CYS LYS LYS SEQRES 9 D 223 ILE ASP LEU THR THR ILE VAL LYS PRO GLU ALA PRO PHE SEQRES 10 D 223 ASP LEU SER VAL VAL TYR ARG GLU GLY ALA ASN ASP PHE SEQRES 11 D 223 VAL VAL THR PHE ASN THR SER HIS LEU GLN LYS LYS TYR SEQRES 12 D 223 VAL LYS VAL LEU MET HIS ASP VAL ALA TYR ARG GLN GLU SEQRES 13 D 223 LYS ASP GLU ASN LYS TRP THR HIS VAL ASN LEU SER SER SEQRES 14 D 223 THR LYS LEU THR LEU LEU GLN ARG LYS LEU GLN PRO ALA SEQRES 15 D 223 ALA MET TYR GLU ILE LYS VAL ARG SER ILE PRO ASP HIS SEQRES 16 D 223 TYR PHE LYS GLY PHE TRP SER GLU TRP SER PRO SER TYR SEQRES 17 D 223 TYR PHE ARG THR PRO GLU ILE ASN ASN SER SER GLY GLU SEQRES 18 D 223 MET ASP HET 1PE A 340 16 HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 5 1PE C10 H22 O6 FORMUL 6 HOH *28(H2 O) HELIX 1 1 ASP A 8 VAL A 15 1 8 HELIX 2 2 VAL A 15 SER A 26 1 12 HELIX 3 3 PHE A 39 HIS A 45 1 7 HELIX 4 4 LYS A 51 GLN A 65 1 15 HELIX 5 5 GLY A 73 ASN A 91 1 19 HELIX 6 6 ASP A 127 MET A 147 1 21 HELIX 7 7 THR B 132 LYS B 137 5 6 HELIX 8 8 ARG B 173 LEU B 175 5 3 HELIX 9 9 ASP C 8 VAL C 15 1 8 HELIX 10 10 VAL C 15 SER C 26 1 12 HELIX 11 11 PHE C 39 HIS C 45 1 7 HELIX 12 12 LYS C 51 GLN C 65 1 15 HELIX 13 13 GLY C 73 LEU C 90 1 18 HELIX 14 14 ASP C 127 MET C 147 1 21 HELIX 15 15 THR D 132 LYS D 137 5 6 HELIX 16 16 ARG D 173 LEU D 175 5 3 SHEET 1 A 4 PHE B 20 ASN B 29 0 SHEET 2 A 4 GLN B 32 PHE B 39 -1 O SER B 34 N GLN B 25 SHEET 3 A 4 ILE B 71 THR B 76 -1 O THR B 76 N HIS B 33 SHEET 4 A 4 ARG B 66 LEU B 68 -1 N LEU B 68 O ILE B 71 SHEET 1 B 4 CYS B 62 ASN B 64 0 SHEET 2 B 4 LEU B 49 CYS B 54 -1 N ILE B 53 O LEU B 63 SHEET 3 B 4 SER B 85 VAL B 91 -1 O LYS B 90 N GLU B 50 SHEET 4 B 4 LYS B 94 ILE B 101 -1 O ILE B 101 N SER B 85 SHEET 1 C 3 PHE B 113 SER B 116 0 SHEET 2 C 3 ASP B 125 ASN B 131 -1 O ASN B 131 N PHE B 113 SHEET 3 C 3 TYR B 119 ARG B 120 -1 N ARG B 120 O ASP B 125 SHEET 1 D 3 PHE B 113 SER B 116 0 SHEET 2 D 3 ASP B 125 ASN B 131 -1 O ASN B 131 N PHE B 113 SHEET 3 D 3 LYS B 167 LEU B 171 -1 O LEU B 168 N VAL B 128 SHEET 1 E 4 THR B 159 LEU B 163 0 SHEET 2 E 4 LEU B 143 GLN B 151 -1 N TYR B 149 O THR B 159 SHEET 3 E 4 ALA B 179 PRO B 189 -1 O LYS B 184 N ALA B 148 SHEET 4 E 4 TYR B 204 THR B 208 -1 O PHE B 206 N TYR B 181 SHEET 1 F 4 PHE D 20 ASN D 29 0 SHEET 2 F 4 GLN D 32 PHE D 39 -1 O SER D 34 N GLN D 25 SHEET 3 F 4 ILE D 71 THR D 76 -1 O THR D 76 N HIS D 33 SHEET 4 F 4 ARG D 66 LEU D 68 -1 N LEU D 68 O ILE D 71 SHEET 1 G 4 CYS D 62 ASN D 64 0 SHEET 2 G 4 LEU D 49 CYS D 54 -1 N ILE D 53 O LEU D 63 SHEET 3 G 4 SER D 85 VAL D 91 -1 O LYS D 90 N GLU D 50 SHEET 4 G 4 SER D 95 ILE D 101 -1 O ILE D 101 N SER D 85 SHEET 1 H 3 PHE D 113 SER D 116 0 SHEET 2 H 3 ASP D 125 ASN D 131 -1 O ASN D 131 N PHE D 113 SHEET 3 H 3 TYR D 119 ARG D 120 -1 N ARG D 120 O ASP D 125 SHEET 1 I 3 PHE D 113 SER D 116 0 SHEET 2 I 3 ASP D 125 ASN D 131 -1 O ASN D 131 N PHE D 113 SHEET 3 I 3 LYS D 167 LEU D 171 -1 O LEU D 168 N VAL D 128 SHEET 1 J 3 THR D 159 LEU D 163 0 SHEET 2 J 3 LEU D 143 GLN D 151 -1 N TYR D 149 O THR D 159 SHEET 3 J 3 SER D 187 PRO D 189 -1 O ILE D 188 N MET D 144 SHEET 1 K 4 THR D 159 LEU D 163 0 SHEET 2 K 4 LEU D 143 GLN D 151 -1 N TYR D 149 O THR D 159 SHEET 3 K 4 ALA D 179 LYS D 184 -1 O LYS D 184 N ALA D 148 SHEET 4 K 4 TYR D 204 THR D 208 -1 O PHE D 206 N TYR D 181 SSBOND 1 CYS A 34 CYS A 129 1555 1555 2.03 SSBOND 2 CYS A 47 CYS A 141 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 37 1555 1555 2.04 SSBOND 4 CYS B 54 CYS B 62 1555 1555 2.04 SSBOND 5 CYS B 88 CYS B 98 1555 1555 2.04 SSBOND 6 CYS C 34 CYS C 129 1555 1555 2.03 SSBOND 7 CYS C 47 CYS C 141 1555 1555 2.03 SSBOND 8 CYS D 22 CYS D 37 1555 1555 2.04 SSBOND 9 CYS D 54 CYS D 62 1555 1555 2.04 SSBOND 10 CYS D 88 CYS D 98 1555 1555 2.04 SITE 1 AC1 2 ASP A 8 ASN A 91 CRYST1 47.202 113.021 87.534 90.00 105.10 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021186 0.000000 0.005716 0.00000 SCALE2 0.000000 0.008848 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011833 0.00000