HEADER METAL BINDING PROTEIN 19-JUN-08 3DI5 TITLE CRYSTAL STRUCTURE OF A DINB-LIKE PROTEIN (BCE_4655) FROM BACILLUS TITLE 2 CEREUS ATCC 10987 AT 2.01 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DINB-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS ATCC 10987; SOURCE 3 ORGANISM_TAXID: 222523; SOURCE 4 ATCC: 10987; SOURCE 5 GENE: NP_980948.1, BCE_4655; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3DI5 1 REMARK SEQADV REVDAT 6 24-JUL-19 3DI5 1 REMARK LINK REVDAT 5 25-OCT-17 3DI5 1 REMARK REVDAT 4 13-JUL-11 3DI5 1 VERSN REVDAT 3 23-MAR-11 3DI5 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3DI5 1 VERSN REVDAT 1 19-AUG-08 3DI5 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A DINB-LIKE PROTEIN (NP_980948.1) FROM JRNL TITL 2 BACILLUS CEREUS ATCC 10987 AT 2.01 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 11168 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 534 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 699 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 35.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.40000 REMARK 3 B22 (A**2) : 5.29000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.715 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1189 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 753 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1627 ; 1.273 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1850 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 151 ; 5.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;36.434 ;24.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 184 ;13.892 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;23.366 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1324 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 235 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 280 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 718 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 608 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 554 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 42 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 17 ; 0.121 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.076 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 778 ; 0.764 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 305 ; 0.154 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1219 ; 1.147 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 489 ; 1.641 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 408 ; 2.259 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8597 10.4516 20.6285 REMARK 3 T TENSOR REMARK 3 T11: -0.0434 T22: -0.1881 REMARK 3 T33: -0.0932 T12: 0.0047 REMARK 3 T13: 0.0057 T23: -0.0786 REMARK 3 L TENSOR REMARK 3 L11: 6.3896 L22: 1.5532 REMARK 3 L33: 1.6438 L12: 0.5926 REMARK 3 L13: 1.8195 L23: -0.2248 REMARK 3 S TENSOR REMARK 3 S11: 0.0178 S12: -0.4297 S13: 0.3764 REMARK 3 S21: 0.0133 S22: -0.1043 S23: 0.1939 REMARK 3 S31: -0.0313 S32: 0.0527 S33: 0.0865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1.HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2.ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 3.X-RAY FLUORESCENCE EXCITATION AND WAVELENGTH SCANS, ANOMALOUS REMARK 3 DIFFERENCE FOURIERS AND COORDINATION GEOMETRY SUPPORT THE REMARK 3 MODELING OF NI ION IN THE PUTATIVE ACTIVE SITE REMARK 3 4.THE DATA IS ANISOTROPIC ALONG THE B-DIRECTION. REMARK 4 REMARK 4 3DI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048066. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.57 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97916,0.97860 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11180 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.009 REMARK 200 RESOLUTION RANGE LOW (A) : 28.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.930 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 30.5% REMARK 280 POLYETHYLENE GLYCOL 4000, 0.1M TRIS PH 8.57, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.09500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.09500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 25.16000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.09500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.16000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.06000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.09500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE RESULTS FROM SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY SUPPORTS THE ASSIGNMENT OF A MONOMER AS A REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 169 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY A 151 REMARK 465 PRO A 152 REMARK 465 ALA A 153 REMARK 465 LYS A 154 REMARK 465 GLU A 155 REMARK 465 GLU A 156 REMARK 465 TRP A 157 REMARK 465 ALA A 158 REMARK 465 THR A 159 REMARK 465 ALA A 160 REMARK 465 GLY A 161 REMARK 465 MSE A 162 REMARK 465 GLU A 163 REMARK 465 ALA A 164 REMARK 465 PRO A 165 REMARK 465 LYS A 166 REMARK 465 MSE A 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 SER A 11 OG REMARK 470 GLU A 17 OE1 OE2 REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 LYS A 63 CD CE NZ REMARK 470 GLU A 65 CD OE1 OE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 86 CE NZ REMARK 470 GLU A 98 OE1 OE2 REMARK 470 ARG A 113 NE CZ NH1 NH2 REMARK 470 ARG A 140 NE CZ NH1 NH2 REMARK 470 THR A 145 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 111 55.51 35.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 168 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 48 NE2 REMARK 620 2 HIS A 127 NE2 83.7 REMARK 620 3 HIS A 131 NE2 86.5 88.7 REMARK 620 4 HOH A 171 O 87.7 87.5 173.4 REMARK 620 5 HOH A 175 O 85.9 168.6 95.5 87.3 REMARK 620 6 HOH A 185 O 173.2 99.5 99.4 86.5 90.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 168 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374604 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3DI5 A 1 167 UNP Q72ZL3 Q72ZL3_BACC1 1 167 SEQADV 3DI5 GLY A 0 UNP Q72ZL3 EXPRESSION TAG SEQRES 1 A 168 GLY MSE TYR GLN THR ILE GLU GLY PHE LEU GLN SER TRP SEQRES 2 A 168 THR TYR GLU THR GLU SER THR GLN LYS MSE LEU ASP VAL SEQRES 3 A 168 LEU THR ASP GLU SER LEU SER GLN GLU ILE ALA PRO GLY SEQRES 4 A 168 HIS TRP THR LEU GLY ARG VAL ALA TRP HIS ILE VAL THR SEQRES 5 A 168 ALA ILE PRO VAL ILE LEU SER GLY THR GLY LEU LYS PHE SEQRES 6 A 168 GLU GLY GLU THR LYS ASP TYR PRO VAL PRO THR SER ALA SEQRES 7 A 168 LYS THR ILE ALA ASP GLY TYR ARG LYS VAL ASN THR ALA SEQRES 8 A 168 PHE VAL GLU ALA LEU GLN SER GLU TRP THR ASP LYS ASP SEQRES 9 A 168 LEU THR THR ILE ASN ASP PHE PHE GLY ARG PRO MSE PRO SEQRES 10 A 168 ASN SER ILE PHE LEU MSE THR LEU ILE ASN HIS GLN ASN SEQRES 11 A 168 HIS HIS ARG GLY GLN MSE THR VAL LEU MSE ARG GLN ALA SEQRES 12 A 168 GLY LEU THR VAL PRO GLY VAL TYR GLY PRO ALA LYS GLU SEQRES 13 A 168 GLU TRP ALA THR ALA GLY MSE GLU ALA PRO LYS MSE MODRES 3DI5 MSE A 1 MET SELENOMETHIONINE MODRES 3DI5 MSE A 22 MET SELENOMETHIONINE MODRES 3DI5 MSE A 115 MET SELENOMETHIONINE MODRES 3DI5 MSE A 122 MET SELENOMETHIONINE MODRES 3DI5 MSE A 135 MET SELENOMETHIONINE MODRES 3DI5 MSE A 139 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 22 8 HET MSE A 115 16 HET MSE A 122 8 HET MSE A 135 8 HET MSE A 139 8 HET NI A 168 1 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 HOH *55(H2 O) HELIX 1 1 THR A 4 LEU A 26 1 23 HELIX 2 2 GLU A 29 GLN A 33 5 5 HELIX 3 3 THR A 41 SER A 58 1 18 HELIX 4 4 GLY A 59 GLY A 61 5 3 HELIX 5 5 SER A 76 TRP A 99 1 24 HELIX 6 6 THR A 100 THR A 105 5 6 HELIX 7 7 ASN A 117 ALA A 142 1 26 SHEET 1 A 2 ILE A 107 PHE A 110 0 SHEET 2 A 2 ARG A 113 PRO A 116 -1 O ARG A 113 N PHE A 110 LINK C MSE A 1 N TYR A 2 1555 1555 1.34 LINK C LYS A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N LEU A 23 1555 1555 1.32 LINK C PRO A 114 N AMSE A 115 1555 1555 1.33 LINK C PRO A 114 N BMSE A 115 1555 1555 1.33 LINK C AMSE A 115 N PRO A 116 1555 1555 1.34 LINK C BMSE A 115 N PRO A 116 1555 1555 1.34 LINK C LEU A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N THR A 123 1555 1555 1.33 LINK C GLN A 134 N MSE A 135 1555 1555 1.32 LINK C MSE A 135 N THR A 136 1555 1555 1.34 LINK C LEU A 138 N MSE A 139 1555 1555 1.33 LINK C MSE A 139 N ARG A 140 1555 1555 1.33 LINK NE2 HIS A 48 NI NI A 168 1555 1555 2.30 LINK NE2 HIS A 127 NI NI A 168 1555 1555 2.37 LINK NE2 HIS A 131 NI NI A 168 1555 1555 2.38 LINK NI NI A 168 O HOH A 171 1555 1555 2.36 LINK NI NI A 168 O HOH A 175 1555 1555 2.40 LINK NI NI A 168 O HOH A 185 1555 1555 2.28 CISPEP 1 TYR A 71 PRO A 72 0 1.35 SITE 1 AC1 6 HIS A 48 HIS A 127 HIS A 131 HOH A 171 SITE 2 AC1 6 HOH A 175 HOH A 185 CRYST1 78.120 84.190 50.320 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011878 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019873 0.00000 HETATM 1 N MSE A 1 7.297 -1.140 21.855 1.00 67.48 N HETATM 2 CA MSE A 1 6.466 0.089 21.680 1.00 67.38 C HETATM 3 C MSE A 1 6.624 1.036 22.879 1.00 67.17 C HETATM 4 O MSE A 1 7.261 0.680 23.880 1.00 67.51 O HETATM 5 CB MSE A 1 4.991 -0.288 21.493 1.00 67.14 C