HEADER OXIDOREDUCTASE 20-JUN-08 3DII OBSLTE 17-MAR-09 3DII 3GED TITLE CRYSTAL STRUCTURE OF A CARBOHYDRATE SPECIFIC SCOR ENZYME TITLE 2 FROM CLOSTRIDIUM THERMOCELLUM, LIGAND-FREE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM ATCC 27405; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: DSM 1237; SOURCE 5 ATCC: 27405; SOURCE 6 GENE: CTHE_1510; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETSUMO KEYWDS SDR, SCOR, ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HUETHER,Z-J.LIU,H.XU,B-C.WANG,V.PLETNEV,Q.MAO,T.UMLAND, AUTHOR 2 W.DUAX REVDAT 4 17-MAR-09 3DII 1 OBSLTE REVDAT 3 24-FEB-09 3DII 1 VERSN REVDAT 2 08-JUL-08 3DII 1 REMARK REVDAT 1 01-JUL-08 3DII 0 JRNL AUTH R.HUETHER,Z-J.LIU,H.XU,B-C.WANG,V.PLETNEV,Q.MAO, JRNL AUTH 2 T.UMLAND,W.DUAX JRNL TITL FINGERPRINT AND STRUCTURAL ANALYSIS OF A JRNL TITL 2 CARBOHYDRATE SPECIFIC SCOR ENZYME FROM CLOSTRIDIUM JRNL TITL 3 THERMOCELLUM. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 68441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7050 - 4.9640 0.98 2813 149 0.2250 0.2310 REMARK 3 2 4.9640 - 3.9410 0.99 2721 133 0.1660 0.1970 REMARK 3 3 3.9410 - 3.4430 0.99 2681 129 0.1740 0.2040 REMARK 3 4 3.4430 - 3.1280 1.00 2675 145 0.1880 0.1870 REMARK 3 5 3.1280 - 2.9040 1.00 2664 157 0.2100 0.2390 REMARK 3 6 2.9040 - 2.7330 1.00 2670 130 0.2170 0.2510 REMARK 3 7 2.7330 - 2.5960 0.99 2643 129 0.1910 0.2430 REMARK 3 8 2.5960 - 2.4830 0.99 2678 119 0.1870 0.2230 REMARK 3 9 2.4830 - 2.3870 0.99 2625 148 0.1770 0.1800 REMARK 3 10 2.3870 - 2.3050 0.99 2622 154 0.1880 0.2150 REMARK 3 11 2.3050 - 2.2330 0.93 2475 123 0.2500 0.2910 REMARK 3 12 2.2330 - 2.1690 0.95 2502 130 0.2100 0.2620 REMARK 3 13 2.1690 - 2.1120 0.99 2603 138 0.1880 0.1970 REMARK 3 14 2.1120 - 2.0600 0.99 2637 118 0.1750 0.2100 REMARK 3 15 2.0600 - 2.0140 0.99 2621 156 0.1760 0.2240 REMARK 3 16 2.0140 - 1.9710 0.99 2594 138 0.1810 0.2200 REMARK 3 17 1.9710 - 1.9310 0.94 2439 157 0.2270 0.2640 REMARK 3 18 1.9310 - 1.8950 0.88 2332 118 0.3840 0.4840 REMARK 3 19 1.8950 - 1.8610 0.92 2443 126 0.2220 0.2660 REMARK 3 20 1.8610 - 1.8290 0.99 2582 145 0.1930 0.2230 REMARK 3 21 1.8290 - 1.8000 1.00 2606 157 0.1950 0.2510 REMARK 3 22 1.8000 - 1.7720 1.00 2624 136 0.2040 0.2340 REMARK 3 23 1.7720 - 1.7460 1.00 2620 131 0.2120 0.2470 REMARK 3 24 1.7460 - 1.7220 0.99 2597 130 0.2120 0.2470 REMARK 3 25 1.7220 - 1.6980 0.96 2529 149 0.2250 0.2300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 50.90 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05900 REMARK 3 B22 (A**2) : 1.05900 REMARK 3 B33 (A**2) : -2.11900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3801 REMARK 3 ANGLE : 1.816 5129 REMARK 3 CHIRALITY : 0.107 569 REMARK 3 PLANARITY : 0.008 658 REMARK 3 DIHEDRAL : 16.482 1377 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 52.2146 72.0023 43.8640 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0907 REMARK 3 T33: 0.1437 T12: -0.0410 REMARK 3 T13: -0.0227 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.3799 L22: 0.4746 REMARK 3 L33: 0.2809 L12: -0.3020 REMARK 3 L13: 0.0369 L23: -0.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.0240 S12: -0.1311 S13: 0.0173 REMARK 3 S21: -0.1047 S22: 0.0371 S23: 0.0409 REMARK 3 S31: -0.0145 S32: -0.0312 S33: -0.0149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROGRAM REFMAC 5.0 HAS ALSO BEEN REMARK 3 USED IN REFINEMENT REMARK 4 REMARK 4 3DII COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB048079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979454 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68441 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 12.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRIES 1YDE, 1VL8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG 4000, 100MM TAPS PH REMARK 280 9.0, 50MM SODIUM THIOSULFATE PENTAHYDRATE. 1:1 COCKTAIL TO REMARK 280 PROTEIN RATIO (10MG/ML), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.30400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.65200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.95600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.95600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.65200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.30400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 81.30400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 121.95600 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 40.65200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.14350 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 40.65200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 121.95600 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.14350 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.14350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.30400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -137.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 124.28700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 124.28700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 85 REMARK 465 GLU A 182 REMARK 465 GLN A 183 REMARK 465 GLN A 184 REMARK 465 ILE A 245 REMARK 465 ASP A 246 REMARK 465 LYS A 247 REMARK 465 MET B 1 REMARK 465 ARG B 85 REMARK 465 GLU B 182 REMARK 465 GLN B 183 REMARK 465 GLN B 184 REMARK 465 ILE B 245 REMARK 465 ASP B 246 REMARK 465 LYS B 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 74 -11.96 71.45 REMARK 500 LYS A 88 -157.42 -97.61 REMARK 500 LEU A 107 -48.20 -137.71 REMARK 500 ALA A 132 -129.45 -106.45 REMARK 500 ASP A 226 20.02 -140.69 REMARK 500 GLN B 74 -9.31 68.19 REMARK 500 LYS B 88 -159.17 -97.16 REMARK 500 LEU B 107 -50.02 -138.72 REMARK 500 ALA B 132 -128.37 -106.90 REMARK 500 ASP B 226 16.91 -140.32 REMARK 500 ASN B 240 3.89 82.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS B 244 21.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 358 DISTANCE = 5.27 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 248 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 248 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DIJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A CARBOHYDRATE SPECIFIC SCOR ENZYME REMARK 900 FROM CLOSTRIDIUM THERMOCELLUM, NAD-BOUND FORM DBREF 3DII A 1 247 UNP A3DFK9 A3DFK9_CLOTH 1 247 DBREF 3DII B 1 247 UNP A3DFK9 A3DFK9_CLOTH 1 247 SEQRES 1 A 247 MET ASN ARG GLY VAL ILE VAL THR GLY GLY GLY HIS GLY SEQRES 2 A 247 ILE GLY LYS GLN ILE CYS LEU ASP PHE LEU GLU ALA GLY SEQRES 3 A 247 ASP LYS VAL CYS PHE ILE ASP ILE ASP GLU LYS ARG SER SEQRES 4 A 247 ALA ASP PHE ALA LYS GLU ARG PRO ASN LEU PHE TYR PHE SEQRES 5 A 247 HIS GLY ASP VAL ALA ASP PRO LEU THR LEU LYS LYS PHE SEQRES 6 A 247 VAL GLU TYR ALA MET GLU LYS LEU GLN ARG ILE ASP VAL SEQRES 7 A 247 LEU VAL ASN ASN ALA CYS ARG GLY SER LYS GLY ILE LEU SEQRES 8 A 247 SER SER LEU LEU TYR GLU GLU PHE ASP TYR ILE LEU SER SEQRES 9 A 247 VAL GLY LEU LYS ALA PRO TYR GLU LEU SER ARG LEU CYS SEQRES 10 A 247 ARG ASP GLU LEU ILE LYS ASN LYS GLY ARG ILE ILE ASN SEQRES 11 A 247 ILE ALA SER THR ARG ALA PHE GLN SER GLU PRO ASP SER SEQRES 12 A 247 GLU ALA TYR ALA SER ALA LYS GLY GLY ILE VAL ALA LEU SEQRES 13 A 247 THR HIS ALA LEU ALA MET SER LEU GLY PRO ASP VAL LEU SEQRES 14 A 247 VAL ASN CYS ILE ALA PRO GLY TRP ILE ASN VAL THR GLU SEQRES 15 A 247 GLN GLN GLU PHE THR GLN GLU ASP CYS ALA ALA ILE PRO SEQRES 16 A 247 ALA GLY LYS VAL GLY THR PRO LYS ASP ILE SER ASN MET SEQRES 17 A 247 VAL LEU PHE LEU CYS GLN GLN ASP PHE ILE THR GLY GLU SEQRES 18 A 247 THR ILE ILE VAL ASP GLY GLY MET SER LYS ARG MET ILE SEQRES 19 A 247 TYR HIS GLY ASP TRP ASN TRP PHE TYR LYS ILE ASP LYS SEQRES 1 B 247 MET ASN ARG GLY VAL ILE VAL THR GLY GLY GLY HIS GLY SEQRES 2 B 247 ILE GLY LYS GLN ILE CYS LEU ASP PHE LEU GLU ALA GLY SEQRES 3 B 247 ASP LYS VAL CYS PHE ILE ASP ILE ASP GLU LYS ARG SER SEQRES 4 B 247 ALA ASP PHE ALA LYS GLU ARG PRO ASN LEU PHE TYR PHE SEQRES 5 B 247 HIS GLY ASP VAL ALA ASP PRO LEU THR LEU LYS LYS PHE SEQRES 6 B 247 VAL GLU TYR ALA MET GLU LYS LEU GLN ARG ILE ASP VAL SEQRES 7 B 247 LEU VAL ASN ASN ALA CYS ARG GLY SER LYS GLY ILE LEU SEQRES 8 B 247 SER SER LEU LEU TYR GLU GLU PHE ASP TYR ILE LEU SER SEQRES 9 B 247 VAL GLY LEU LYS ALA PRO TYR GLU LEU SER ARG LEU CYS SEQRES 10 B 247 ARG ASP GLU LEU ILE LYS ASN LYS GLY ARG ILE ILE ASN SEQRES 11 B 247 ILE ALA SER THR ARG ALA PHE GLN SER GLU PRO ASP SER SEQRES 12 B 247 GLU ALA TYR ALA SER ALA LYS GLY GLY ILE VAL ALA LEU SEQRES 13 B 247 THR HIS ALA LEU ALA MET SER LEU GLY PRO ASP VAL LEU SEQRES 14 B 247 VAL ASN CYS ILE ALA PRO GLY TRP ILE ASN VAL THR GLU SEQRES 15 B 247 GLN GLN GLU PHE THR GLN GLU ASP CYS ALA ALA ILE PRO SEQRES 16 B 247 ALA GLY LYS VAL GLY THR PRO LYS ASP ILE SER ASN MET SEQRES 17 B 247 VAL LEU PHE LEU CYS GLN GLN ASP PHE ILE THR GLY GLU SEQRES 18 B 247 THR ILE ILE VAL ASP GLY GLY MET SER LYS ARG MET ILE SEQRES 19 B 247 TYR HIS GLY ASP TRP ASN TRP PHE TYR LYS ILE ASP LYS HET GOL A 248 6 HET GOL B 248 6 HETNAM GOL GLYCEROL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *345(H2 O) HELIX 1 1 HIS A 12 ALA A 25 1 14 HELIX 2 2 ASP A 35 LYS A 44 1 10 HELIX 3 3 ASP A 58 GLN A 74 1 17 HELIX 4 4 GLY A 89 SER A 93 5 5 HELIX 5 5 LEU A 95 LEU A 107 1 13 HELIX 6 6 LEU A 107 ASN A 124 1 18 HELIX 7 7 SER A 133 PHE A 137 5 5 HELIX 8 8 SER A 143 GLY A 165 1 23 HELIX 9 9 THR A 187 ALA A 193 1 7 HELIX 10 10 THR A 201 GLN A 214 1 14 HELIX 11 11 GLY A 228 ARG A 232 5 5 HELIX 12 12 HIS B 12 ALA B 25 1 14 HELIX 13 13 ASP B 35 LYS B 44 1 10 HELIX 14 14 ASP B 58 GLN B 74 1 17 HELIX 15 15 GLY B 89 SER B 93 5 5 HELIX 16 16 LEU B 95 LEU B 107 1 13 HELIX 17 17 LEU B 107 CYS B 117 1 11 HELIX 18 18 CYS B 117 LYS B 125 1 9 HELIX 19 19 SER B 133 PHE B 137 5 5 HELIX 20 20 SER B 143 GLY B 165 1 23 HELIX 21 21 THR B 187 ALA B 193 1 7 HELIX 22 22 THR B 201 GLN B 214 1 14 HELIX 23 23 GLY B 228 ARG B 232 5 5 SHEET 1 A 7 LEU A 49 HIS A 53 0 SHEET 2 A 7 LYS A 28 ASP A 33 1 N VAL A 29 O PHE A 50 SHEET 3 A 7 GLY A 4 THR A 8 1 N VAL A 5 O CYS A 30 SHEET 4 A 7 VAL A 78 ASN A 81 1 O VAL A 80 N ILE A 6 SHEET 5 A 7 ARG A 127 ILE A 131 1 O ILE A 131 N ASN A 81 SHEET 6 A 7 LEU A 169 PRO A 175 1 O ASN A 171 N ASN A 130 SHEET 7 A 7 THR A 222 VAL A 225 1 O ILE A 223 N ALA A 174 SHEET 1 B 7 LEU B 49 HIS B 53 0 SHEET 2 B 7 LYS B 28 ASP B 33 1 N VAL B 29 O PHE B 50 SHEET 3 B 7 GLY B 4 THR B 8 1 N VAL B 5 O LYS B 28 SHEET 4 B 7 VAL B 78 ASN B 81 1 O VAL B 80 N ILE B 6 SHEET 5 B 7 ARG B 127 ILE B 131 1 O ILE B 131 N ASN B 81 SHEET 6 B 7 LEU B 169 PRO B 175 1 O ASN B 171 N ASN B 130 SHEET 7 B 7 THR B 222 VAL B 225 1 O ILE B 223 N ALA B 174 CISPEP 1 GLY A 165 PRO A 166 0 5.03 CISPEP 2 GLY B 165 PRO B 166 0 7.01 SITE 1 AC1 3 ARG A 135 TRP A 177 ASP B 238 SITE 1 AC2 3 ASP A 238 ARG B 135 TRP B 177 CRYST1 124.287 124.287 162.608 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008046 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006150 0.00000