HEADER OXIDOREDUCTASE 23-JUN-08 3DJD TITLE CRYSTAL STRUCTURE OF THE DEGLYCATING ENZYME FRUCTOSAMINE TITLE 2 OXIDASE FROM ASPERGILLUS FUMIGATUS (AMADORIASE II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSYL AMINE: OXYGEN OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FRUCTOSAMINE OXIDASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_COMMON: SARTORYA FUMIGATA; SOURCE 4 ORGANISM_TAXID: 5085; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS FRUCTOSYL-AMINO ACID, AMADORIASE, DEGLYCATION, KEYWDS 2 OXIDOREDUCTASE, FRUCTOSAMINE OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR F.COLLARD,J.ZHANG,I.NEMET,K.R.QANUNGO,V.M.MONNIER,V.C.YEE REVDAT 4 24-FEB-09 3DJD 1 VERSN REVDAT 3 14-OCT-08 3DJD 1 TITLE REVDAT 2 12-AUG-08 3DJD 1 COMPND KEYWDS REVDAT 1 22-JUL-08 3DJD 0 JRNL AUTH F.COLLARD,J.ZHANG,I.NEMET,K.R.QANUNGO,V.M.MONNIER, JRNL AUTH 2 V.C.YEE JRNL TITL CRYSTAL STRUCTURE OF THE DEGLYCATING ENZYME JRNL TITL 2 FRUCTOSAMINE OXIDASE (FAOX-II) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 80816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5806 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 311 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 842 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.168 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6966 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9473 ; 1.367 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 850 ; 6.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 327 ;32.372 ;23.456 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1136 ;13.409 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;15.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1009 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5385 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3518 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4760 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 699 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 43 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4342 ; 1.029 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6786 ; 1.440 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3058 ; 2.241 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2687 ; 3.384 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3DJD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB048110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 36.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.300 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.4, 10 % ISO- REMARK 280 PROPANOL, 18 % PEG 4000, PROTEIN SOLUTION 15 MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.13300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 58 REMARK 465 GLN A 59 REMARK 465 TYR A 60 REMARK 465 SER A 61 REMARK 465 ASN A 62 REMARK 465 ASN A 63 REMARK 465 LYS A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66 REMARK 465 ILE A 67 REMARK 465 GLY A 110 REMARK 465 VAL A 111 REMARK 465 ARG A 112 REMARK 465 VAL A 113 REMARK 465 ARG A 114 REMARK 465 PRO A 115 REMARK 465 GLY A 116 REMARK 465 LEU A 438 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 58 REMARK 465 GLN B 59 REMARK 465 TYR B 60 REMARK 465 SER B 61 REMARK 465 ASN B 62 REMARK 465 ASN B 63 REMARK 465 LYS B 64 REMARK 465 ASP B 65 REMARK 465 GLU B 66 REMARK 465 GLY B 110 REMARK 465 VAL B 111 REMARK 465 ARG B 112 REMARK 465 VAL B 113 REMARK 465 ARG B 114 REMARK 465 PRO B 115 REMARK 465 GLY B 116 REMARK 465 GLU B 117 REMARK 465 ASP B 118 REMARK 465 PRO B 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 335 C8M FAD B 500 1.72 REMARK 500 O HOH A 609 O HOH A 878 1.93 REMARK 500 SG CYS A 335 C8M FAD A 500 1.95 REMARK 500 OD1 ASN B 195 NE2 GLN B 352 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 308 CB GLU B 308 CG 0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 138 -63.86 -97.63 REMARK 500 ARG A 262 -51.91 -133.97 REMARK 500 THR A 303 48.57 -94.54 REMARK 500 VAL B 138 -68.48 -91.38 REMARK 500 PHE B 143 52.90 38.93 REMARK 500 ARG B 262 -52.82 -130.21 REMARK 500 THR B 303 49.66 -96.53 REMARK 500 ARG B 365 20.18 -142.59 REMARK 500 ASN B 396 58.49 -145.62 REMARK 500 ASN B 402 58.72 -151.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1137 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B1141 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 877 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B1173 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH B1176 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 926 DISTANCE = 5.52 ANGSTROMS REMARK 525 HOH A 928 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A 930 DISTANCE = 5.59 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GJE RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE AUTHORS THE SEQUENCE WAS VERIFIED BY SEQUENCING REMARK 999 AND DIFFERS FROM THE UNP SEQUENCE P78573. IN THE DEPOSITED REMARK 999 SEQUENCE RESIDUE 203 IS ALA. DBREF 3DJD A 1 438 UNP P78573 P78573_ASPFU 1 438 DBREF 3DJD B 1 438 UNP P78573 P78573_ASPFU 1 438 SEQADV 3DJD ALA A 203 UNP P78573 GLY 203 SEE REMARK 999 SEQADV 3DJD ALA B 203 UNP P78573 GLY 203 SEE REMARK 999 SEQRES 1 A 438 MSE ALA VAL THR LYS SER SER SER LEU LEU ILE VAL GLY SEQRES 2 A 438 ALA GLY THR TRP GLY THR SER THR ALA LEU HIS LEU ALA SEQRES 3 A 438 ARG ARG GLY TYR THR ASN VAL THR VAL LEU ASP PRO TYR SEQRES 4 A 438 PRO VAL PRO SER ALA ILE SER ALA GLY ASN ASP VAL ASN SEQRES 5 A 438 LYS VAL ILE SER SER GLY GLN TYR SER ASN ASN LYS ASP SEQRES 6 A 438 GLU ILE GLU VAL ASN GLU ILE LEU ALA GLU GLU ALA PHE SEQRES 7 A 438 ASN GLY TRP LYS ASN ASP PRO LEU PHE LYS PRO TYR TYR SEQRES 8 A 438 HIS ASP THR GLY LEU LEU MSE SER ALA CYS SER GLN GLU SEQRES 9 A 438 GLY LEU ASP ARG LEU GLY VAL ARG VAL ARG PRO GLY GLU SEQRES 10 A 438 ASP PRO ASN LEU VAL GLU LEU THR ARG PRO GLU GLN PHE SEQRES 11 A 438 ARG LYS LEU ALA PRO GLU GLY VAL LEU GLN GLY ASP PHE SEQRES 12 A 438 PRO GLY TRP LYS GLY TYR PHE ALA ARG SER GLY ALA GLY SEQRES 13 A 438 TRP ALA HIS ALA ARG ASN ALA LEU VAL ALA ALA ALA ARG SEQRES 14 A 438 GLU ALA GLN ARG MSE GLY VAL LYS PHE VAL THR GLY THR SEQRES 15 A 438 PRO GLN GLY ARG VAL VAL THR LEU ILE PHE GLU ASN ASN SEQRES 16 A 438 ASP VAL LYS GLY ALA VAL THR ALA ASP GLY LYS ILE TRP SEQRES 17 A 438 ARG ALA GLU ARG THR PHE LEU CYS ALA GLY ALA SER ALA SEQRES 18 A 438 GLY GLN PHE LEU ASP PHE LYS ASN GLN LEU ARG PRO THR SEQRES 19 A 438 ALA TRP THR LEU VAL HIS ILE ALA LEU LYS PRO GLU GLU SEQRES 20 A 438 ARG ALA LEU TYR LYS ASN ILE PRO VAL ILE PHE ASN ILE SEQRES 21 A 438 GLU ARG GLY PHE PHE PHE GLU PRO ASP GLU GLU ARG GLY SEQRES 22 A 438 GLU ILE LYS ILE CYS ASP GLU HIS PRO GLY TYR THR ASN SEQRES 23 A 438 MSE VAL GLN SER ALA ASP GLY THR MSE MSE SER ILE PRO SEQRES 24 A 438 PHE GLU LYS THR GLN ILE PRO LYS GLU ALA GLU THR ARG SEQRES 25 A 438 VAL ARG ALA LEU LEU LYS GLU THR MSE PRO GLN LEU ALA SEQRES 26 A 438 ASP ARG PRO PHE SER PHE ALA ARG ILE CYS TRP CYS ALA SEQRES 27 A 438 ASP THR ALA ASN ARG GLU PHE LEU ILE ASP ARG HIS PRO SEQRES 28 A 438 GLN TYR HIS SER LEU VAL LEU GLY CYS GLY ALA SER GLY SEQRES 29 A 438 ARG GLY PHE LYS TYR LEU PRO SER ILE GLY ASN LEU ILE SEQRES 30 A 438 VAL ASP ALA MSE GLU GLY LYS VAL PRO GLN LYS ILE HIS SEQRES 31 A 438 GLU LEU ILE LYS TRP ASN PRO ASP ILE ALA ALA ASN ARG SEQRES 32 A 438 ASN TRP ARG ASP THR LEU GLY ARG PHE GLY GLY PRO ASN SEQRES 33 A 438 ARG VAL MSE ASP PHE HIS ASP VAL LYS GLU TRP THR ASN SEQRES 34 A 438 VAL GLN TYR ARG ASP ILE SER LYS LEU SEQRES 1 B 438 MSE ALA VAL THR LYS SER SER SER LEU LEU ILE VAL GLY SEQRES 2 B 438 ALA GLY THR TRP GLY THR SER THR ALA LEU HIS LEU ALA SEQRES 3 B 438 ARG ARG GLY TYR THR ASN VAL THR VAL LEU ASP PRO TYR SEQRES 4 B 438 PRO VAL PRO SER ALA ILE SER ALA GLY ASN ASP VAL ASN SEQRES 5 B 438 LYS VAL ILE SER SER GLY GLN TYR SER ASN ASN LYS ASP SEQRES 6 B 438 GLU ILE GLU VAL ASN GLU ILE LEU ALA GLU GLU ALA PHE SEQRES 7 B 438 ASN GLY TRP LYS ASN ASP PRO LEU PHE LYS PRO TYR TYR SEQRES 8 B 438 HIS ASP THR GLY LEU LEU MSE SER ALA CYS SER GLN GLU SEQRES 9 B 438 GLY LEU ASP ARG LEU GLY VAL ARG VAL ARG PRO GLY GLU SEQRES 10 B 438 ASP PRO ASN LEU VAL GLU LEU THR ARG PRO GLU GLN PHE SEQRES 11 B 438 ARG LYS LEU ALA PRO GLU GLY VAL LEU GLN GLY ASP PHE SEQRES 12 B 438 PRO GLY TRP LYS GLY TYR PHE ALA ARG SER GLY ALA GLY SEQRES 13 B 438 TRP ALA HIS ALA ARG ASN ALA LEU VAL ALA ALA ALA ARG SEQRES 14 B 438 GLU ALA GLN ARG MSE GLY VAL LYS PHE VAL THR GLY THR SEQRES 15 B 438 PRO GLN GLY ARG VAL VAL THR LEU ILE PHE GLU ASN ASN SEQRES 16 B 438 ASP VAL LYS GLY ALA VAL THR ALA ASP GLY LYS ILE TRP SEQRES 17 B 438 ARG ALA GLU ARG THR PHE LEU CYS ALA GLY ALA SER ALA SEQRES 18 B 438 GLY GLN PHE LEU ASP PHE LYS ASN GLN LEU ARG PRO THR SEQRES 19 B 438 ALA TRP THR LEU VAL HIS ILE ALA LEU LYS PRO GLU GLU SEQRES 20 B 438 ARG ALA LEU TYR LYS ASN ILE PRO VAL ILE PHE ASN ILE SEQRES 21 B 438 GLU ARG GLY PHE PHE PHE GLU PRO ASP GLU GLU ARG GLY SEQRES 22 B 438 GLU ILE LYS ILE CYS ASP GLU HIS PRO GLY TYR THR ASN SEQRES 23 B 438 MSE VAL GLN SER ALA ASP GLY THR MSE MSE SER ILE PRO SEQRES 24 B 438 PHE GLU LYS THR GLN ILE PRO LYS GLU ALA GLU THR ARG SEQRES 25 B 438 VAL ARG ALA LEU LEU LYS GLU THR MSE PRO GLN LEU ALA SEQRES 26 B 438 ASP ARG PRO PHE SER PHE ALA ARG ILE CYS TRP CYS ALA SEQRES 27 B 438 ASP THR ALA ASN ARG GLU PHE LEU ILE ASP ARG HIS PRO SEQRES 28 B 438 GLN TYR HIS SER LEU VAL LEU GLY CYS GLY ALA SER GLY SEQRES 29 B 438 ARG GLY PHE LYS TYR LEU PRO SER ILE GLY ASN LEU ILE SEQRES 30 B 438 VAL ASP ALA MSE GLU GLY LYS VAL PRO GLN LYS ILE HIS SEQRES 31 B 438 GLU LEU ILE LYS TRP ASN PRO ASP ILE ALA ALA ASN ARG SEQRES 32 B 438 ASN TRP ARG ASP THR LEU GLY ARG PHE GLY GLY PRO ASN SEQRES 33 B 438 ARG VAL MSE ASP PHE HIS ASP VAL LYS GLU TRP THR ASN SEQRES 34 B 438 VAL GLN TYR ARG ASP ILE SER LYS LEU MODRES 3DJD MSE A 98 MET SELENOMETHIONINE MODRES 3DJD MSE A 174 MET SELENOMETHIONINE MODRES 3DJD MSE A 287 MET SELENOMETHIONINE MODRES 3DJD MSE A 295 MET SELENOMETHIONINE MODRES 3DJD MSE A 296 MET SELENOMETHIONINE MODRES 3DJD MSE A 321 MET SELENOMETHIONINE MODRES 3DJD MSE A 381 MET SELENOMETHIONINE MODRES 3DJD MSE A 419 MET SELENOMETHIONINE MODRES 3DJD MSE B 98 MET SELENOMETHIONINE MODRES 3DJD MSE B 174 MET SELENOMETHIONINE MODRES 3DJD MSE B 287 MET SELENOMETHIONINE MODRES 3DJD MSE B 295 MET SELENOMETHIONINE MODRES 3DJD MSE B 296 MET SELENOMETHIONINE MODRES 3DJD MSE B 321 MET SELENOMETHIONINE MODRES 3DJD MSE B 381 MET SELENOMETHIONINE MODRES 3DJD MSE B 419 MET SELENOMETHIONINE HET MSE A 98 8 HET MSE A 174 8 HET MSE A 287 8 HET MSE A 295 16 HET MSE A 296 8 HET MSE A 321 8 HET MSE A 381 8 HET MSE A 419 16 HET MSE B 98 8 HET MSE B 174 8 HET MSE B 287 8 HET MSE B 295 16 HET MSE B 296 8 HET MSE B 321 8 HET MSE B 381 8 HET MSE B 419 8 HET FAD A 500 53 HET FAD B 500 53 HETNAM MSE SELENOMETHIONINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 HOH *842(H2 O) HELIX 1 1 GLY A 15 ARG A 28 1 14 HELIX 2 2 GLU A 68 ASP A 84 1 17 HELIX 3 3 PHE A 87 PRO A 89 5 3 HELIX 4 4 SER A 102 LEU A 109 1 8 HELIX 5 5 ARG A 126 LYS A 132 1 7 HELIX 6 6 HIS A 159 MSE A 174 1 16 HELIX 7 7 ALA A 217 PHE A 224 5 8 HELIX 8 8 LYS A 244 LYS A 252 5 9 HELIX 9 9 PRO A 306 MSE A 321 1 16 HELIX 10 10 PRO A 322 ALA A 325 5 4 HELIX 11 11 GLY A 366 LEU A 370 5 5 HELIX 12 12 SER A 372 GLY A 383 1 12 HELIX 13 13 PRO A 386 LYS A 394 1 9 HELIX 14 14 ASN A 396 ALA A 401 5 6 HELIX 15 15 HIS A 422 VAL A 424 5 3 HELIX 16 16 GLY B 15 ARG B 28 1 14 HELIX 17 17 GLU B 68 ASP B 84 1 17 HELIX 18 18 PHE B 87 PRO B 89 5 3 HELIX 19 19 SER B 102 ARG B 108 1 7 HELIX 20 20 ARG B 126 LYS B 132 1 7 HELIX 21 21 HIS B 159 MSE B 174 1 16 HELIX 22 22 ALA B 217 PHE B 224 5 8 HELIX 23 23 LYS B 244 LYS B 252 5 9 HELIX 24 24 PRO B 306 MSE B 321 1 16 HELIX 25 25 PRO B 322 ALA B 325 5 4 HELIX 26 26 GLY B 366 LEU B 370 5 5 HELIX 27 27 SER B 372 GLY B 383 1 12 HELIX 28 28 PRO B 386 LYS B 394 1 9 HELIX 29 29 ASN B 396 ALA B 401 1 6 HELIX 30 30 HIS B 422 VAL B 424 5 3 SHEET 1 A 6 LYS A 177 THR A 180 0 SHEET 2 A 6 VAL A 33 ASP A 37 1 N VAL A 35 O VAL A 179 SHEET 3 A 6 LEU A 9 VAL A 12 1 N ILE A 11 O LEU A 36 SHEET 4 A 6 ARG A 212 LEU A 215 1 O PHE A 214 N LEU A 10 SHEET 5 A 6 LEU A 356 CYS A 360 1 O VAL A 357 N THR A 213 SHEET 6 A 6 LEU A 346 ARG A 349 -1 N ASP A 348 O LEU A 358 SHEET 1 B 3 LYS A 53 SER A 56 0 SHEET 2 B 3 ALA A 155 ALA A 158 -1 O GLY A 156 N ILE A 55 SHEET 3 B 3 TYR A 91 HIS A 92 -1 N HIS A 92 O TRP A 157 SHEET 1 C 8 LEU A 121 LEU A 124 0 SHEET 2 C 8 LYS A 147 ALA A 151 -1 O PHE A 150 N VAL A 122 SHEET 3 C 8 LEU A 96 ALA A 100 -1 N MSE A 98 O TYR A 149 SHEET 4 C 8 VAL A 256 ASN A 259 1 O VAL A 256 N LEU A 97 SHEET 5 C 8 GLY A 263 PHE A 265 -1 O GLY A 263 N ASN A 259 SHEET 6 C 8 GLU A 274 ASP A 279 -1 O CYS A 278 N PHE A 264 SHEET 7 C 8 ARG A 232 ALA A 242 -1 N ILE A 241 O ILE A 275 SHEET 8 C 8 PHE A 331 ASP A 339 -1 O CYS A 335 N TRP A 236 SHEET 1 D 3 VAL A 187 PHE A 192 0 SHEET 2 D 3 VAL A 197 THR A 202 -1 O VAL A 201 N VAL A 188 SHEET 3 D 3 LYS A 206 ARG A 209 -1 O TRP A 208 N ALA A 200 SHEET 1 E 2 TYR A 284 THR A 285 0 SHEET 2 E 2 MSE A 419 ASP A 420 1 O MSE A 419 N THR A 285 SHEET 1 F 2 MSE A 287 GLN A 289 0 SHEET 2 F 2 MSE A 295 SER A 297 -1 O MSE A 296 N VAL A 288 SHEET 1 G 6 LYS B 177 THR B 180 0 SHEET 2 G 6 VAL B 33 ASP B 37 1 N VAL B 35 O VAL B 179 SHEET 3 G 6 LEU B 9 VAL B 12 1 N ILE B 11 O LEU B 36 SHEET 4 G 6 ARG B 212 LEU B 215 1 O PHE B 214 N VAL B 12 SHEET 5 G 6 LEU B 356 CYS B 360 1 O VAL B 357 N LEU B 215 SHEET 6 G 6 LEU B 346 ARG B 349 -1 N ASP B 348 O LEU B 358 SHEET 1 H 3 LYS B 53 SER B 56 0 SHEET 2 H 3 ALA B 155 ALA B 158 -1 O GLY B 156 N ILE B 55 SHEET 3 H 3 TYR B 91 HIS B 92 -1 N HIS B 92 O TRP B 157 SHEET 1 I 8 LEU B 121 LEU B 124 0 SHEET 2 I 8 LYS B 147 ALA B 151 -1 O PHE B 150 N VAL B 122 SHEET 3 I 8 LEU B 96 ALA B 100 -1 N LEU B 96 O ALA B 151 SHEET 4 I 8 VAL B 256 ASN B 259 1 O VAL B 256 N LEU B 97 SHEET 5 I 8 GLY B 263 PHE B 265 -1 O GLY B 263 N ASN B 259 SHEET 6 I 8 GLU B 274 ASP B 279 -1 O CYS B 278 N PHE B 264 SHEET 7 I 8 ARG B 232 ALA B 242 -1 N VAL B 239 O ILE B 277 SHEET 8 I 8 PHE B 331 ASP B 339 -1 O CYS B 335 N TRP B 236 SHEET 1 J 3 VAL B 187 GLU B 193 0 SHEET 2 J 3 ASP B 196 THR B 202 -1 O VAL B 201 N VAL B 188 SHEET 3 J 3 ILE B 207 ARG B 209 -1 O TRP B 208 N ALA B 200 SHEET 1 K 2 TYR B 284 THR B 285 0 SHEET 2 K 2 MSE B 419 ASP B 420 1 O MSE B 419 N THR B 285 SHEET 1 L 2 MSE B 287 GLN B 289 0 SHEET 2 L 2 MSE B 295 SER B 297 -1 O MSE B 296 N VAL B 288 LINK C LEU A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N SER A 99 1555 1555 1.33 LINK C ARG A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N GLY A 175 1555 1555 1.33 LINK C ASN A 286 N MSE A 287 1555 1555 1.33 LINK C MSE A 287 N VAL A 288 1555 1555 1.33 LINK C THR A 294 N AMSE A 295 1555 1555 1.33 LINK C THR A 294 N BMSE A 295 1555 1555 1.34 LINK C AMSE A 295 N MSE A 296 1555 1555 1.33 LINK C BMSE A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N SER A 297 1555 1555 1.34 LINK C THR A 320 N MSE A 321 1555 1555 1.34 LINK C MSE A 321 N PRO A 322 1555 1555 1.35 LINK C ALA A 380 N MSE A 381 1555 1555 1.33 LINK C MSE A 381 N GLU A 382 1555 1555 1.33 LINK C VAL A 418 N AMSE A 419 1555 1555 1.33 LINK C VAL A 418 N BMSE A 419 1555 1555 1.34 LINK C AMSE A 419 N ASP A 420 1555 1555 1.33 LINK C BMSE A 419 N ASP A 420 1555 1555 1.33 LINK C LEU B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N SER B 99 1555 1555 1.33 LINK C ARG B 173 N MSE B 174 1555 1555 1.33 LINK C MSE B 174 N GLY B 175 1555 1555 1.34 LINK C ASN B 286 N MSE B 287 1555 1555 1.33 LINK C MSE B 287 N VAL B 288 1555 1555 1.33 LINK C THR B 294 N AMSE B 295 1555 1555 1.34 LINK C THR B 294 N BMSE B 295 1555 1555 1.33 LINK C AMSE B 295 N MSE B 296 1555 1555 1.33 LINK C BMSE B 295 N MSE B 296 1555 1555 1.33 LINK C MSE B 296 N SER B 297 1555 1555 1.33 LINK C THR B 320 N MSE B 321 1555 1555 1.33 LINK C MSE B 321 N PRO B 322 1555 1555 1.33 LINK C ALA B 380 N MSE B 381 1555 1555 1.33 LINK C MSE B 381 N GLU B 382 1555 1555 1.34 LINK C VAL B 418 N MSE B 419 1555 1555 1.32 LINK C MSE B 419 N ASP B 420 1555 1555 1.33 CISPEP 1 VAL A 41 PRO A 42 0 1.78 CISPEP 2 THR A 182 PRO A 183 0 4.53 CISPEP 3 VAL B 41 PRO B 42 0 -3.03 CISPEP 4 THR B 182 PRO B 183 0 2.46 SITE 1 AC1 25 GLY A 13 GLY A 15 THR A 16 TRP A 17 SITE 2 AC1 25 LEU A 36 ASP A 37 PRO A 38 SER A 43 SITE 3 AC1 25 ILE A 45 SER A 46 ALA A 47 GLY A 48 SITE 4 AC1 25 LYS A 53 ALA A 217 GLY A 218 SER A 220 SITE 5 AC1 25 PHE A 224 CYS A 335 CYS A 337 ALA A 362 SITE 6 AC1 25 GLY A 364 ARG A 365 GLY A 366 PHE A 367 SITE 7 AC1 25 LYS A 368 SITE 1 AC2 25 GLY B 13 GLY B 15 THR B 16 TRP B 17 SITE 2 AC2 25 LEU B 36 ASP B 37 PRO B 38 SER B 43 SITE 3 AC2 25 ILE B 45 SER B 46 ALA B 47 GLY B 48 SITE 4 AC2 25 LYS B 53 ALA B 217 GLY B 218 SER B 220 SITE 5 AC2 25 PHE B 224 CYS B 335 CYS B 337 ALA B 362 SITE 6 AC2 25 GLY B 364 ARG B 365 GLY B 366 PHE B 367 SITE 7 AC2 25 LYS B 368 CRYST1 74.310 54.266 106.252 90.00 95.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013457 0.000000 0.001395 0.00000 SCALE2 0.000000 0.018428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009462 0.00000