HEADER OXIDOREDUCTASE 23-JUN-08 3DJG TITLE CATALYTIC CYCLE OF HUMAN GLUTATHIONE REDUCTASE NEAR 1 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE REDUCTASE; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: UNP RESIDUES 45 TO 522; COMPND 5 SYNONYM: GRASE, GR; COMPND 6 EC: 1.8.1.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSR, GLUR, GRD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOENZYME, GLUTATHIONE, NICOTINAMIDE, ALTERNATIVE INITIATION, FAD, KEYWDS 2 FLAVOPROTEIN, MITOCHONDRION, NADP, OXIDOREDUCTASE, PHOSPHOPROTEIN, KEYWDS 3 REDOX-ACTIVE CENTER, TRANSIT PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR D.S.BERKHOLZ,H.R.FABER,S.N.SAVVIDES,P.A.KARPLUS REVDAT 7 20-NOV-24 3DJG 1 REMARK REVDAT 6 30-AUG-23 3DJG 1 REMARK REVDAT 5 25-DEC-13 3DJG 1 AUTHOR REVDAT 4 13-JUL-11 3DJG 1 VERSN REVDAT 3 24-FEB-09 3DJG 1 VERSN REVDAT 2 16-SEP-08 3DJG 1 JRNL REVDAT 1 05-AUG-08 3DJG 0 JRNL AUTH D.S.BERKHOLZ,H.R.FABER,S.N.SAVVIDES,P.A.KARPLUS JRNL TITL CATALYTIC CYCLE OF HUMAN GLUTATHIONE REDUCTASE NEAR 1 A JRNL TITL 2 RESOLUTION. JRNL REF J.MOL.BIOL. V. 382 371 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18638483 JRNL DOI 10.1016/J.JMB.2008.06.083 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 42115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 312 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 512 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3714 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5053 ; 1.662 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 5.646 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;33.550 ;24.203 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 641 ;14.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.756 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 579 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2704 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1508 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2583 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 353 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 97 ; 0.220 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2355 ; 5.890 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3723 ; 6.961 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1560 ;13.733 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1324 ;18.724 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 18 X 159 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2640 16.5620 26.8900 REMARK 3 T TENSOR REMARK 3 T11: -0.0911 T22: -0.0050 REMARK 3 T33: 0.0211 T12: -0.0096 REMARK 3 T13: -0.0420 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.0773 L22: 0.9242 REMARK 3 L33: 0.4194 L12: -0.6868 REMARK 3 L13: -0.0965 L23: 0.1190 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0794 S13: -0.1100 REMARK 3 S21: 0.0233 S22: -0.0099 S23: 0.1178 REMARK 3 S31: 0.0085 S32: -0.1188 S33: 0.0160 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 160 X 290 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3700 7.5350 9.7240 REMARK 3 T TENSOR REMARK 3 T11: -0.0367 T22: -0.0318 REMARK 3 T33: 0.0091 T12: -0.0004 REMARK 3 T13: -0.0343 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.9396 L22: 1.0290 REMARK 3 L33: 1.9110 L12: 0.2576 REMARK 3 L13: -0.1898 L23: 0.1834 REMARK 3 S TENSOR REMARK 3 S11: -0.0997 S12: 0.1122 S13: -0.1277 REMARK 3 S21: -0.1766 S22: 0.0368 S23: -0.0194 REMARK 3 S31: 0.1089 S32: -0.0396 S33: 0.0630 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 291 X 365 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6040 31.7900 18.6530 REMARK 3 T TENSOR REMARK 3 T11: -0.0923 T22: -0.0092 REMARK 3 T33: 0.0114 T12: 0.0371 REMARK 3 T13: -0.0496 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 1.6129 L22: 1.7622 REMARK 3 L33: 1.7817 L12: -0.3382 REMARK 3 L13: -0.4006 L23: 0.4302 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: 0.1313 S13: 0.1092 REMARK 3 S21: -0.1032 S22: -0.0628 S23: -0.0807 REMARK 3 S31: -0.1363 S32: -0.0582 S33: -0.0241 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 366 X 478 REMARK 3 ORIGIN FOR THE GROUP (A): 42.9720 25.2710 27.1840 REMARK 3 T TENSOR REMARK 3 T11: -0.0584 T22: -0.0323 REMARK 3 T33: 0.0421 T12: -0.0327 REMARK 3 T13: -0.0586 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.8105 L22: 0.7765 REMARK 3 L33: 1.5584 L12: -0.2996 REMARK 3 L13: 0.3241 L23: 0.2308 REMARK 3 S TENSOR REMARK 3 S11: -0.0589 S12: 0.0977 S13: 0.1007 REMARK 3 S21: -0.0625 S22: 0.0017 S23: -0.0912 REMARK 3 S31: -0.2663 S32: 0.1662 S33: 0.0572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 298.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46862 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3GRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3% AMMONIUM SULFATE, 0.1 M POTASSIUM REMARK 280 PHOSPHATE AND 0.1% BETA-OCTYL GLUCOSIDE, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.68100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.76600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.68100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.26833 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 72.11867 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X 999 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA X 2 REMARK 465 CYS X 3 REMARK 465 ARG X 4 REMARK 465 GLN X 5 REMARK 465 GLU X 6 REMARK 465 PRO X 7 REMARK 465 GLN X 8 REMARK 465 PRO X 9 REMARK 465 GLN X 10 REMARK 465 GLY X 11 REMARK 465 PRO X 12 REMARK 465 PRO X 13 REMARK 465 PRO X 14 REMARK 465 ALA X 15 REMARK 465 ALA X 16 REMARK 465 GLY X 17 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS X 82 O HOH X 991 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 578 O HOH X 578 2656 1.78 REMARK 500 ND1 HIS X 75 O HOH X 991 2656 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS X 52 -112.61 -130.16 REMARK 500 VAL X 61 32.29 -142.90 REMARK 500 ALA X 195 21.10 -140.22 REMARK 500 HIS X 219 -148.46 -120.75 REMARK 500 ALA X 336 77.38 49.48 REMARK 500 ASN X 425 176.94 70.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD X 479 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP X 483 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DJJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN-LIGAND COMPLEX AT HIGHER RESOLUTION AND REMARK 900 CRYOTEMPERATURE INSTEAD OF ROOM TEMPERATURE. REMARK 900 RELATED ID: 3DK4 RELATED DB: PDB REMARK 900 RELATED ID: 3DK8 RELATED DB: PDB REMARK 900 RELATED ID: 3DK9 RELATED DB: PDB DBREF 3DJG X 18 478 UNP P00390 GSHR_HUMAN 62 522 SEQRES 1 X 477 ALA CYS ARG GLN GLU PRO GLN PRO GLN GLY PRO PRO PRO SEQRES 2 X 477 ALA ALA GLY VAL ALA SER TYR ASP TYR LEU VAL ILE GLY SEQRES 3 X 477 GLY GLY SER GLY GLY LEU ALA SER ALA ARG ARG ALA ALA SEQRES 4 X 477 GLU LEU GLY ALA ARG ALA ALA VAL VAL GLU SER HIS LYS SEQRES 5 X 477 LEU GLY GLY THR CYS VAL ASN VAL GLY CYS VAL PRO LYS SEQRES 6 X 477 LYS VAL MET TRP ASN THR ALA VAL HIS SER GLU PHE MET SEQRES 7 X 477 HIS ASP HIS ALA ASP TYR GLY PHE PRO SER CYS GLU GLY SEQRES 8 X 477 LYS PHE ASN TRP ARG VAL ILE LYS GLU LYS ARG ASP ALA SEQRES 9 X 477 TYR VAL SER ARG LEU ASN ALA ILE TYR GLN ASN ASN LEU SEQRES 10 X 477 THR LYS SER HIS ILE GLU ILE ILE ARG GLY HIS ALA ALA SEQRES 11 X 477 PHE THR SER ASP PRO LYS PRO THR ILE GLU VAL SER GLY SEQRES 12 X 477 LYS LYS TYR THR ALA PRO HIS ILE LEU ILE ALA THR GLY SEQRES 13 X 477 GLY MET PRO SER THR PRO HIS GLU SER GLN ILE PRO GLY SEQRES 14 X 477 ALA SER LEU GLY ILE THR SER ASP GLY PHE PHE GLN LEU SEQRES 15 X 477 GLU GLU LEU PRO GLY ARG SER VAL ILE VAL GLY ALA GLY SEQRES 16 X 477 TYR ILE ALA VAL GLU MET ALA GLY ILE LEU SER ALA LEU SEQRES 17 X 477 GLY SER LYS THR SER LEU MET ILE ARG HIS ASP LYS VAL SEQRES 18 X 477 LEU ARG SER PHE ASP SER MET ILE SER THR ASN CYS THR SEQRES 19 X 477 GLU GLU LEU GLU ASN ALA GLY VAL GLU VAL LEU LYS PHE SEQRES 20 X 477 SER GLN VAL LYS GLU VAL LYS LYS THR LEU SER GLY LEU SEQRES 21 X 477 GLU VAL SER MET VAL THR ALA VAL PRO GLY ARG LEU PRO SEQRES 22 X 477 VAL MET THR MET ILE PRO ASP VAL ASP CYS LEU LEU TRP SEQRES 23 X 477 ALA ILE GLY ARG VAL PRO ASN THR LYS ASP LEU SER LEU SEQRES 24 X 477 ASN LYS LEU GLY ILE GLN THR ASP ASP LYS GLY HIS ILE SEQRES 25 X 477 ILE VAL ASP GLU PHE GLN ASN THR ASN VAL LYS GLY ILE SEQRES 26 X 477 TYR ALA VAL GLY ASP VAL CYS GLY LYS ALA LEU LEU THR SEQRES 27 X 477 PRO VAL ALA ILE ALA ALA GLY ARG LYS LEU ALA HIS ARG SEQRES 28 X 477 LEU PHE GLU TYR LYS GLU ASP SER LYS LEU ASP TYR ASN SEQRES 29 X 477 ASN ILE PRO THR VAL VAL PHE SER HIS PRO PRO ILE GLY SEQRES 30 X 477 THR VAL GLY LEU THR GLU ASP GLU ALA ILE HIS LYS TYR SEQRES 31 X 477 GLY ILE GLU ASN VAL LYS THR TYR SER THR SER PHE THR SEQRES 32 X 477 PRO MET TYR HIS ALA VAL THR LYS ARG LYS THR LYS CYS SEQRES 33 X 477 VAL MET LYS MET VAL CYS ALA ASN LYS GLU GLU LYS VAL SEQRES 34 X 477 VAL GLY ILE HIS MET GLN GLY LEU GLY CYS ASP GLU MET SEQRES 35 X 477 LEU GLN GLY PHE ALA VAL ALA VAL LYS MET GLY ALA THR SEQRES 36 X 477 LYS ALA ASP PHE ASP ASN THR VAL ALA ILE HIS PRO THR SEQRES 37 X 477 SER SER GLU GLU LEU VAL THR LEU ARG HET FAD X 479 53 HET NDP X 483 48 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NDP C21 H30 N7 O17 P3 FORMUL 4 HOH *512(H2 O) HELIX 1 1 GLY X 29 LEU X 42 1 14 HELIX 2 2 GLY X 55 GLY X 62 1 8 HELIX 3 3 GLY X 62 HIS X 82 1 21 HELIX 4 4 ALA X 83 GLY X 86 5 4 HELIX 5 5 ASN X 95 SER X 121 1 27 HELIX 6 6 GLY X 170 GLY X 174 5 5 HELIX 7 7 THR X 176 PHE X 181 1 6 HELIX 8 8 GLY X 196 LEU X 209 1 14 HELIX 9 9 ASP X 227 ALA X 241 1 15 HELIX 10 10 THR X 295 LEU X 303 5 9 HELIX 11 11 GLY X 330 GLY X 334 5 5 HELIX 12 12 LEU X 338 GLU X 355 1 18 HELIX 13 13 THR X 383 GLY X 392 1 10 HELIX 14 14 PRO X 405 THR X 411 5 7 HELIX 15 15 GLY X 439 MET X 453 1 15 HELIX 16 16 THR X 456 ASN X 462 1 7 HELIX 17 17 SER X 470 THR X 476 5 7 SHEET 1 A 4 ALA X 19 SER X 20 0 SHEET 2 A 4 LYS X 145 THR X 148 1 O THR X 148 N ALA X 19 SHEET 3 A 4 THR X 139 VAL X 142 -1 N VAL X 142 O LYS X 145 SHEET 4 A 4 ALA X 130 PHE X 132 -1 N ALA X 131 O GLU X 141 SHEET 1 B 5 GLU X 124 ARG X 127 0 SHEET 2 B 5 ALA X 46 GLU X 50 1 N VAL X 48 O ILE X 126 SHEET 3 B 5 TYR X 23 ILE X 26 1 N VAL X 25 O VAL X 49 SHEET 4 B 5 ILE X 152 ILE X 154 1 O LEU X 153 N ILE X 26 SHEET 5 B 5 ILE X 326 ALA X 328 1 O TYR X 327 N ILE X 154 SHEET 1 C 2 GLY X 158 PRO X 160 0 SHEET 2 C 2 ARG X 291 PRO X 293 -1 O VAL X 292 N MET X 159 SHEET 1 D 4 GLU X 244 LEU X 246 0 SHEET 2 D 4 LYS X 212 MET X 216 1 N LEU X 215 O GLU X 244 SHEET 3 D 4 ARG X 189 VAL X 193 1 N ILE X 192 O MET X 216 SHEET 4 D 4 CYS X 284 TRP X 287 1 O LEU X 286 N VAL X 193 SHEET 1 E 3 SER X 249 THR X 257 0 SHEET 2 E 3 GLY X 260 THR X 267 -1 O GLY X 260 N THR X 257 SHEET 3 E 3 VAL X 275 VAL X 282 -1 O ILE X 279 N VAL X 263 SHEET 1 F 5 THR X 369 VAL X 371 0 SHEET 2 F 5 ILE X 377 GLY X 381 -1 O THR X 379 N THR X 369 SHEET 3 F 5 LYS X 429 GLN X 436 -1 O ILE X 433 N VAL X 380 SHEET 4 F 5 CYS X 417 ALA X 424 -1 N VAL X 422 O GLY X 432 SHEET 5 F 5 VAL X 396 PHE X 403 -1 N LYS X 397 O CYS X 423 SSBOND 1 CYS X 90 CYS X 90 1555 2656 2.50 CISPEP 1 HIS X 374 PRO X 375 0 -6.44 CISPEP 2 HIS X 467 PRO X 468 0 -10.67 SITE 1 AC1 37 GLY X 27 GLY X 29 SER X 30 GLY X 31 SITE 2 AC1 37 GLU X 50 SER X 51 HIS X 52 GLY X 56 SITE 3 AC1 37 THR X 57 CYS X 58 GLY X 62 CYS X 63 SITE 4 AC1 37 LYS X 66 GLY X 128 HIS X 129 ALA X 130 SITE 5 AC1 37 ALA X 155 THR X 156 GLY X 157 ARG X 291 SITE 6 AC1 37 LEU X 298 GLY X 330 ASP X 331 LEU X 337 SITE 7 AC1 37 LEU X 338 THR X 339 PRO X 340 HIS X 467 SITE 8 AC1 37 PRO X 468 HOH X 485 HOH X 487 HOH X 493 SITE 9 AC1 37 HOH X 498 HOH X 534 HOH X 795 HOH X 827 SITE 10 AC1 37 HOH X 832 SITE 1 AC2 28 LYS X 66 ALA X 195 GLY X 196 TYR X 197 SITE 2 AC2 28 ILE X 198 GLU X 201 ARG X 218 HIS X 219 SITE 3 AC2 28 ARG X 224 ILE X 289 GLY X 290 ARG X 291 SITE 4 AC2 28 LEU X 337 LEU X 338 PHE X 372 HOH X 507 SITE 5 AC2 28 HOH X 510 HOH X 520 HOH X 535 HOH X 568 SITE 6 AC2 28 HOH X 592 HOH X 797 HOH X 839 HOH X 840 SITE 7 AC2 28 HOH X 853 HOH X 939 HOH X 990 HOH X 998 CRYST1 119.532 63.362 84.619 90.00 121.54 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008366 0.000000 0.005135 0.00000 SCALE2 0.000000 0.015782 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013866 0.00000