HEADER OXIDOREDUCTASE 23-JUN-08 3DJL TITLE CRYSTAL STRUCTURE OF ALKYLATION RESPONSE PROTEIN E. COLI AIDB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN AIDB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: AIDB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS ALPHA HELIX, BETA-BARREL, FAD, FLAVOPROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.F.EICHMAN,A.H.METZ,T.BOWLES REVDAT 5 21-MAR-12 3DJL 1 JRNL SITE REVDAT 4 13-JUL-11 3DJL 1 VERSN REVDAT 3 24-FEB-09 3DJL 1 VERSN REVDAT 2 07-OCT-08 3DJL 1 JRNL REVDAT 1 23-SEP-08 3DJL 0 JRNL AUTH T.BOWLES,A.H.METZ,J.O'QUIN,Z.WAWRZAK,B.F.EICHMAN JRNL TITL STRUCTURE AND DNA BINDING OF ALKYLATION RESPONSE PROTEIN JRNL TITL 2 AIDB. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 15299 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18829440 JRNL DOI 10.1073/PNAS.0806521105 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 59648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3170 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1820 REMARK 3 BIN FREE R VALUE SET COUNT : 363 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 439 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.996 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4324 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5867 ; 1.592 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 5.394 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;31.783 ;23.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 715 ;14.130 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.656 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3271 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2671 ; 0.956 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4254 ; 1.717 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1653 ; 2.981 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1613 ; 4.511 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 540 REMARK 3 RESIDUE RANGE : A 542 A 602 REMARK 3 ORIGIN FOR THE GROUP (A): -76.1002 -14.7456 -24.6689 REMARK 3 T TENSOR REMARK 3 T11: -0.0132 T22: -0.0233 REMARK 3 T33: -0.0169 T12: -0.0064 REMARK 3 T13: 0.0094 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.2836 L22: 0.1745 REMARK 3 L33: 0.2147 L12: 0.0115 REMARK 3 L13: 0.0626 L23: 0.0286 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: 0.0398 S13: -0.0519 REMARK 3 S21: -0.0249 S22: 0.0161 S23: -0.0080 REMARK 3 S31: 0.0306 S32: 0.0262 S33: -0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT REMARK 4 REMARK 4 3DJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB048118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.02891 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 12.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 80.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22300 REMARK 200 FOR SHELL : 8.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.0, 50 MM CACL2, AND REMARK 280 4% PEG 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.49450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.93750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.78300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.49450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.93750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.78300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.49450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.93750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.78300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.49450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.93750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 68.78300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -169.97800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -169.97800 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 VAL A 541 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 ASP A 108 CG OD1 OD2 REMARK 470 ARG A 164 NE CZ NH1 NH2 REMARK 470 ARG A 176 NE CZ NH1 NH2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ARG A 202 CZ NH1 NH2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 ARG A 209 CZ NH1 NH2 REMARK 470 GLN A 248 CD OE1 NE2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 ARG A 364 CZ NH1 NH2 REMARK 470 ARG A 365 CD NE CZ NH1 NH2 REMARK 470 LYS A 369 CD CE NZ REMARK 470 LYS A 441 CD CE NZ REMARK 470 ASP A 447 CG OD1 OD2 REMARK 470 GLU A 451 CG CD OE1 OE2 REMARK 470 GLU A 455 CD OE1 OE2 REMARK 470 ARG A 461 CD NE CZ NH1 NH2 REMARK 470 ARG A 465 NE CZ NH1 NH2 REMARK 470 ARG A 469 CD NE CZ NH1 NH2 REMARK 470 GLN A 472 CD OE1 NE2 REMARK 470 GLN A 473 OE1 NE2 REMARK 470 LYS A 476 CD CE NZ REMARK 470 GLU A 484 CD OE1 OE2 REMARK 470 ARG A 518 NE CZ NH1 NH2 REMARK 470 ARG A 522 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 72.25 -117.71 REMARK 500 ASN A 102 13.84 -156.46 REMARK 500 GLN A 274 76.02 -109.65 REMARK 500 SER A 427 -174.45 70.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 602 DBREF 3DJL A 1 541 UNP P33224 AIDB_ECOLI 1 541 SEQRES 1 A 541 MET HIS TRP GLN THR HIS THR VAL PHE ASN GLN PRO ILE SEQRES 2 A 541 PRO LEU ASN ASN SER ASN LEU TYR LEU SER ASP GLY ALA SEQRES 3 A 541 LEU CYS GLU ALA VAL THR ARG GLU GLY ALA GLY TRP ASP SEQRES 4 A 541 SER ASP PHE LEU ALA SER ILE GLY GLN GLN LEU GLY THR SEQRES 5 A 541 ALA GLU SER LEU GLU LEU GLY ARG LEU ALA ASN VAL ASN SEQRES 6 A 541 PRO PRO GLU LEU LEU ARG TYR ASP ALA GLN GLY ARG ARG SEQRES 7 A 541 LEU ASP ASP VAL ARG PHE HIS PRO ALA TRP HIS LEU LEU SEQRES 8 A 541 MET GLN ALA LEU CYS THR ASN ARG VAL HIS ASN LEU ALA SEQRES 9 A 541 TRP GLU GLU ASP ALA ARG SER GLY ALA PHE VAL ALA ARG SEQRES 10 A 541 ALA ALA ARG PHE MET LEU HIS ALA GLN VAL GLU ALA GLY SEQRES 11 A 541 SER LEU CYS PRO ILE THR MET THR PHE ALA ALA THR PRO SEQRES 12 A 541 LEU LEU LEU GLN MET LEU PRO ALA PRO PHE GLN ASP TRP SEQRES 13 A 541 THR THR PRO LEU LEU SER ASP ARG TYR ASP SER HIS LEU SEQRES 14 A 541 LEU PRO GLY GLY GLN LYS ARG GLY LEU LEU ILE GLY MET SEQRES 15 A 541 GLY MET THR GLU LYS GLN GLY GLY SER ASP VAL MET SER SEQRES 16 A 541 ASN THR THR ARG ALA GLU ARG LEU GLU ASP GLY SER TYR SEQRES 17 A 541 ARG LEU VAL GLY HIS LYS TRP PHE PHE SER VAL PRO GLN SEQRES 18 A 541 SER ASP ALA HIS LEU VAL LEU ALA GLN THR ALA GLY GLY SEQRES 19 A 541 LEU SER CYS PHE PHE VAL PRO ARG PHE LEU PRO ASP GLY SEQRES 20 A 541 GLN ARG ASN ALA ILE ARG LEU GLU ARG LEU LYS ASP LYS SEQRES 21 A 541 LEU GLY ASN ARG SER ASN ALA SER CYS GLU VAL GLU PHE SEQRES 22 A 541 GLN ASP ALA ILE GLY TRP LEU LEU GLY LEU GLU GLY GLU SEQRES 23 A 541 GLY ILE ARG LEU ILE LEU LYS MET GLY GLY MET THR ARG SEQRES 24 A 541 PHE ASP CYS ALA LEU GLY SER HIS ALA MET MET ARG ARG SEQRES 25 A 541 ALA PHE SER LEU ALA ILE TYR HIS ALA HIS GLN ARG HIS SEQRES 26 A 541 VAL PHE GLY ASN PRO LEU ILE GLN GLN PRO LEU MET ARG SEQRES 27 A 541 HIS VAL LEU SER ARG MET ALA LEU GLN LEU GLU GLY GLN SEQRES 28 A 541 THR ALA LEU LEU PHE ARG LEU ALA ARG ALA TRP ASP ARG SEQRES 29 A 541 ARG ALA ASP ALA LYS GLU ALA LEU TRP ALA ARG LEU PHE SEQRES 30 A 541 THR PRO ALA ALA LYS PHE VAL ILE CYS LYS ARG GLY MET SEQRES 31 A 541 PRO PHE VAL ALA GLU ALA MET GLU VAL LEU GLY GLY ILE SEQRES 32 A 541 GLY TYR CYS GLU GLU SER GLU LEU PRO ARG LEU TYR ARG SEQRES 33 A 541 GLU MET PRO VAL ASN SER ILE TRP GLU GLY SER GLY ASN SEQRES 34 A 541 ILE MET CYS LEU ASP VAL LEU ARG VAL LEU ASN LYS GLN SEQRES 35 A 541 ALA GLY VAL TYR ASP LEU LEU SER GLU ALA PHE VAL GLU SEQRES 36 A 541 VAL LYS GLY GLN ASP ARG TYR PHE ASP ARG ALA VAL ARG SEQRES 37 A 541 ARG LEU GLN GLN GLN LEU ARG LYS PRO ALA GLU GLU LEU SEQRES 38 A 541 GLY ARG GLU ILE THR HIS GLN LEU PHE LEU LEU GLY CYS SEQRES 39 A 541 GLY ALA GLN MET LEU LYS TYR ALA SER PRO PRO MET ALA SEQRES 40 A 541 GLN ALA TRP CYS GLN VAL MET LEU ASP THR ARG GLY GLY SEQRES 41 A 541 VAL ARG LEU SER GLU GLN ILE GLN ASN ASP LEU LEU LEU SEQRES 42 A 541 ARG ALA THR GLY GLY VAL CYS VAL HET CA A 601 1 HET FAD A 602 53 HETNAM CA CALCIUM ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 CA CA 2+ FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 HOH *439(H2 O) HELIX 1 1 ASP A 24 GLU A 34 1 11 HELIX 2 2 ALA A 36 TRP A 38 5 3 HELIX 3 3 ASP A 39 GLY A 51 1 13 HELIX 4 4 THR A 52 ASN A 65 1 14 HELIX 5 5 HIS A 85 ASN A 98 1 14 HELIX 6 6 ASN A 102 GLU A 106 5 5 HELIX 7 7 GLY A 112 GLU A 128 1 17 HELIX 8 8 SER A 131 LEU A 149 1 19 HELIX 9 9 PRO A 150 ASP A 155 5 6 HELIX 10 10 TRP A 156 LEU A 161 1 6 HELIX 11 11 PRO A 171 LYS A 175 5 5 HELIX 12 12 ASP A 192 ASN A 196 5 5 HELIX 13 13 GLU A 286 ILE A 291 1 6 HELIX 14 14 ILE A 291 ARG A 324 1 34 HELIX 15 15 GLN A 334 ARG A 364 1 31 HELIX 16 16 ASP A 367 GLY A 401 1 35 HELIX 17 17 GLY A 402 CYS A 406 5 5 HELIX 18 18 GLU A 410 TRP A 424 1 15 HELIX 19 19 GLY A 426 GLN A 442 1 17 HELIX 20 20 GLY A 444 GLU A 455 1 12 HELIX 21 21 ASP A 460 LEU A 474 1 15 HELIX 22 22 ALA A 478 GLU A 480 5 3 HELIX 23 23 LEU A 481 ALA A 502 1 22 HELIX 24 24 SER A 503 ASP A 516 1 14 HELIX 25 25 SER A 524 ALA A 535 1 12 SHEET 1 A 2 GLU A 68 TYR A 72 0 SHEET 2 A 2 ARG A 78 ARG A 83 -1 O LEU A 79 N ARG A 71 SHEET 1 B 6 ILE A 180 GLY A 183 0 SHEET 2 B 6 ALA A 224 THR A 231 1 O LEU A 226 N GLY A 183 SHEET 3 B 6 ARG A 199 ARG A 202 1 N ALA A 200 O GLN A 230 SHEET 4 B 6 TYR A 208 SER A 218 -1 O VAL A 211 N ARG A 199 SHEET 5 B 6 SER A 268 LEU A 281 -1 O ALA A 276 N LEU A 210 SHEET 6 B 6 ILE A 252 LEU A 257 -1 N ARG A 253 O GLU A 272 SHEET 1 C 5 ILE A 180 GLY A 183 0 SHEET 2 C 5 ALA A 224 THR A 231 1 O LEU A 226 N GLY A 183 SHEET 3 C 5 GLY A 234 PRO A 241 -1 O SER A 236 N ALA A 229 SHEET 4 C 5 SER A 268 LEU A 281 -1 O LEU A 281 N CYS A 237 SHEET 5 C 5 ILE A 252 LEU A 257 -1 N ARG A 253 O GLU A 272 SHEET 1 D 2 HIS A 325 VAL A 326 0 SHEET 2 D 2 ASN A 329 PRO A 330 -1 O ASN A 329 N VAL A 326 SSBOND 1 CYS A 28 CYS A 540 1555 1555 2.09 SITE 1 AC1 7 GLN A 333 HOH A 701 HOH A 711 HOH A 716 SITE 2 AC1 7 HOH A1060 HOH A1061 HOH A1062 SITE 1 AC2 34 MET A 182 MET A 184 THR A 185 GLY A 190 SITE 2 AC2 34 SER A 191 PHE A 216 SER A 218 LYS A 260 SITE 3 AC2 34 ARG A 324 VAL A 326 PHE A 327 LEU A 331 SITE 4 AC2 34 GLN A 334 MET A 337 GLU A 398 VAL A 399 SITE 5 AC2 34 GLY A 401 GLY A 402 VAL A 420 ILE A 423 SITE 6 AC2 34 TRP A 424 GLU A 425 GLY A 426 SER A 427 SITE 7 AC2 34 ASN A 429 HOH A 709 HOH A 710 HOH A 722 SITE 8 AC2 34 HOH A 723 HOH A 726 HOH A 728 HOH A 740 SITE 9 AC2 34 HOH A 756 HOH A 831 CRYST1 84.989 101.875 137.566 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011766 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009816 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007269 0.00000