data_3DKA # _entry.id 3DKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DKA pdb_00003dka 10.2210/pdb3dka/pdb RCSB RCSB048143 ? ? WWPDB D_1000048143 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 389728 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DKA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-24 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a DinB-like Protein (NP_389123.1) from BACILLUS SUBTILIS at 2.30 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3DKA _cell.length_a 57.690 _cell.length_b 63.340 _cell.length_c 82.060 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DKA _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DinB-like Protein' 18109.627 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)CQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETS(MSE)SAEELVKHILTSFHLFANVIKEGNASPFQNKQ EETETDLNVLAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRALLQLA(MSE)EHEIHHKGNLFVYVRE(MSE)G HTELPFYQQR(MSE) ; _entity_poly.pdbx_seq_one_letter_code_can ;GMCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLN VLAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 389728 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 CYS n 1 4 GLN n 1 5 SER n 1 6 ASN n 1 7 GLN n 1 8 ILE n 1 9 VAL n 1 10 SER n 1 11 HIS n 1 12 PHE n 1 13 LEU n 1 14 SER n 1 15 HIS n 1 16 ARG n 1 17 ASN n 1 18 VAL n 1 19 THR n 1 20 ASN n 1 21 GLU n 1 22 LEU n 1 23 ALA n 1 24 GLU n 1 25 LYS n 1 26 ILE n 1 27 SER n 1 28 LYS n 1 29 ASP n 1 30 HIS n 1 31 TYR n 1 32 SER n 1 33 TYR n 1 34 LYS n 1 35 PRO n 1 36 ALA n 1 37 GLU n 1 38 THR n 1 39 SER n 1 40 MSE n 1 41 SER n 1 42 ALA n 1 43 GLU n 1 44 GLU n 1 45 LEU n 1 46 VAL n 1 47 LYS n 1 48 HIS n 1 49 ILE n 1 50 LEU n 1 51 THR n 1 52 SER n 1 53 PHE n 1 54 HIS n 1 55 LEU n 1 56 PHE n 1 57 ALA n 1 58 ASN n 1 59 VAL n 1 60 ILE n 1 61 LYS n 1 62 GLU n 1 63 GLY n 1 64 ASN n 1 65 ALA n 1 66 SER n 1 67 PRO n 1 68 PHE n 1 69 GLN n 1 70 ASN n 1 71 LYS n 1 72 GLN n 1 73 GLU n 1 74 GLU n 1 75 THR n 1 76 GLU n 1 77 THR n 1 78 ASP n 1 79 LEU n 1 80 ASN n 1 81 VAL n 1 82 LEU n 1 83 ALA n 1 84 LYS n 1 85 THR n 1 86 TYR n 1 87 THR n 1 88 GLU n 1 89 LYS n 1 90 THR n 1 91 VAL n 1 92 ALA n 1 93 ILE n 1 94 LEU n 1 95 GLU n 1 96 GLN n 1 97 LEU n 1 98 THR n 1 99 GLU n 1 100 GLU n 1 101 GLN n 1 102 LEU n 1 103 ASP n 1 104 ARG n 1 105 GLU n 1 106 ILE n 1 107 ASP n 1 108 LEU n 1 109 THR n 1 110 SER n 1 111 ALA n 1 112 PHE n 1 113 GLY n 1 114 ARG n 1 115 LYS n 1 116 VAL n 1 117 THR n 1 118 GLY n 1 119 ARG n 1 120 ALA n 1 121 LEU n 1 122 LEU n 1 123 GLN n 1 124 LEU n 1 125 ALA n 1 126 MSE n 1 127 GLU n 1 128 HIS n 1 129 GLU n 1 130 ILE n 1 131 HIS n 1 132 HIS n 1 133 LYS n 1 134 GLY n 1 135 ASN n 1 136 LEU n 1 137 PHE n 1 138 VAL n 1 139 TYR n 1 140 VAL n 1 141 ARG n 1 142 GLU n 1 143 MSE n 1 144 GLY n 1 145 HIS n 1 146 THR n 1 147 GLU n 1 148 LEU n 1 149 PRO n 1 150 PHE n 1 151 TYR n 1 152 GLN n 1 153 GLN n 1 154 ARG n 1 155 MSE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_389123.1, yjoA, BSU12410' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code YJOA_BACSU _struct_ref.pdbx_db_accession O34334 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLNV LAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DKA A 2 ? 155 ? O34334 1 ? 154 ? 1 154 2 1 3DKA B 2 ? 155 ? O34334 1 ? 154 ? 1 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DKA GLY A 1 ? UNP O34334 ? ? 'expression tag' 0 1 2 3DKA GLY B 1 ? UNP O34334 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DKA # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.57 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M NH4OAc, 30.0000% PEG-4000, 0.1M Citrate pH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-05-14 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97956 1.0 3 0.97904 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97956,0.97904 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DKA _reflns.d_resolution_high 2.30 _reflns.d_resolution_low 29.566 _reflns.number_obs 13596 _reflns.pdbx_Rmerge_I_obs 0.097 _reflns.pdbx_netI_over_sigmaI 7.300 _reflns.percent_possible_obs 95.900 _reflns.B_iso_Wilson_estimate 34.972 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.63 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.30 2.38 4548 ? 2313 0.571 1.58 ? ? ? ? ? 90.50 1 1 2.38 2.48 5203 ? 2619 0.462 1.9 ? ? ? ? ? 96.10 2 1 2.48 2.59 4812 ? 2441 0.378 2.4 ? ? ? ? ? 96.40 3 1 2.59 2.73 5069 ? 2554 0.280 3.0 ? ? ? ? ? 96.00 4 1 2.73 2.90 4885 ? 2460 0.214 3.9 ? ? ? ? ? 96.00 5 1 2.90 3.12 4873 ? 2468 0.163 5.0 ? ? ? ? ? 97.20 6 1 3.12 3.43 4973 ? 2501 0.107 7.6 ? ? ? ? ? 96.80 7 1 3.43 3.93 4994 ? 2523 0.060 12.0 ? ? ? ? ? 96.40 8 1 3.93 4.93 4955 ? 2499 0.040 16.6 ? ? ? ? ? 97.10 9 1 4.93 29.57 5051 ? 2562 0.035 18.5 ? ? ? ? ? 96.50 10 1 # _refine.entry_id 3DKA _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 29.566 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.560 _refine.ls_number_reflns_obs 13568 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. ; _refine.ls_R_factor_obs 0.219 _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.269 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 677 _refine.B_iso_mean 27.260 _refine.aniso_B[1][1] 2.390 _refine.aniso_B[2][2] -0.470 _refine.aniso_B[3][3] -1.920 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.930 _refine.correlation_coeff_Fo_to_Fc_free 0.893 _refine.pdbx_overall_ESU_R 0.437 _refine.pdbx_overall_ESU_R_Free 0.273 _refine.overall_SU_ML 0.193 _refine.overall_SU_B 15.654 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2288 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 2387 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 29.566 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2343 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1532 0.006 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3168 1.073 1.945 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3763 0.839 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 286 4.557 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 117 33.959 25.043 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 418 13.550 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 9 10.103 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 364 0.065 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2587 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 450 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 519 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1538 0.170 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 1131 0.172 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 1140 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 89 0.142 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 16 0.105 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 18 0.225 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.243 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1511 1.304 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 577 0.211 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2308 2.082 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 953 3.402 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 858 4.632 11.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 'TIGHT POSITIONAL' A 798 0.070 0.100 1 'X-RAY DIFFRACTION' 1 ? ? ? 1 'MEDIUM POSITIONAL' A 1007 0.250 0.400 1 'X-RAY DIFFRACTION' 2 ? ? ? 1 'TIGHT THERMAL' A 798 0.070 0.500 1 'X-RAY DIFFRACTION' 3 ? ? ? 1 'MEDIUM THERMAL' A 1007 0.280 1.000 1 'X-RAY DIFFRACTION' 4 ? ? ? # _refine_ls_shell.d_res_high 2.299 _refine_ls_shell.d_res_low 2.380 _refine_ls_shell.pdbx_total_number_of_bins_used 15 _refine_ls_shell.percent_reflns_obs 96.030 _refine_ls_shell.number_reflns_R_work 1225 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.263 _refine_ls_shell.R_factor_R_free 0.289 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1283 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 1 3 A 1 4 B 1 5 A 1 6 B # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 1 A 5 A 67 2 . . . . A 5 A 67 1 ? 2 1 B 5 B 67 2 . . . . B 5 B 67 1 ? 3 2 A 68 A 69 4 . . . . A 68 A 69 1 ? 4 2 B 68 B 69 4 . . . . B 68 B 69 1 ? 5 3 A 70 A 152 2 . . . . A 70 A 152 1 ? 6 3 B 70 B 152 2 . . . . B 70 B 152 1 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3DKA _struct.title 'Crystal structure of a dinb-like protein (yjoa, bsu12410) from bacillus subtilis at 2.30 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text ;Dinb/yfit-like putative metalloenzyme fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3DKA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 6 ? GLU A 24 ? ASN A 5 GLU A 23 1 ? 19 HELX_P HELX_P2 2 SER A 41 ? GLY A 63 ? SER A 40 GLY A 62 1 ? 23 HELX_P HELX_P3 3 ALA A 65 ? GLN A 69 ? ALA A 64 GLN A 68 5 ? 5 HELX_P HELX_P4 4 ASP A 78 ? GLN A 96 ? ASP A 77 GLN A 95 1 ? 19 HELX_P HELX_P5 5 THR A 98 ? ARG A 104 ? THR A 97 ARG A 103 1 ? 7 HELX_P HELX_P6 6 GLY A 118 ? MSE A 143 ? GLY A 117 MSE A 142 1 ? 26 HELX_P HELX_P7 7 ASN B 6 ? LYS B 25 ? ASN B 5 LYS B 24 1 ? 20 HELX_P HELX_P8 8 ILE B 26 ? TYR B 31 ? ILE B 25 TYR B 30 5 ? 6 HELX_P HELX_P9 9 SER B 41 ? GLY B 63 ? SER B 40 GLY B 62 1 ? 23 HELX_P HELX_P10 10 ALA B 65 ? GLN B 69 ? ALA B 64 GLN B 68 5 ? 5 HELX_P HELX_P11 11 ASP B 78 ? GLU B 95 ? ASP B 77 GLU B 94 1 ? 18 HELX_P HELX_P12 12 THR B 98 ? ARG B 104 ? THR B 97 ARG B 103 1 ? 7 HELX_P HELX_P13 13 GLY B 118 ? MSE B 143 ? GLY B 117 MSE B 142 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 39 C ? ? ? 1_555 A MSE 40 N ? ? A SER 38 A MSE 39 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale2 covale both ? A MSE 40 C ? ? ? 1_555 A SER 41 N ? ? A MSE 39 A SER 40 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A ALA 125 C ? ? ? 1_555 A MSE 126 N ? ? A ALA 124 A MSE 125 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 126 C ? ? ? 1_555 A GLU 127 N ? ? A MSE 125 A GLU 126 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale5 covale both ? A GLU 142 C ? ? ? 1_555 A MSE 143 N ? ? A GLU 141 A MSE 142 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 143 C ? ? ? 1_555 A GLY 144 N ? ? A MSE 142 A GLY 143 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? A ARG 154 C ? ? ? 1_555 A MSE 155 N ? ? A ARG 153 A MSE 154 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale8 covale both ? B SER 39 C ? ? ? 1_555 B MSE 40 N ? ? B SER 38 B MSE 39 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale9 covale both ? B MSE 40 C ? ? ? 1_555 B SER 41 N ? ? B MSE 39 B SER 40 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? B ALA 125 C ? ? ? 1_555 B MSE 126 N ? ? B ALA 124 B MSE 125 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale11 covale both ? B MSE 126 C ? ? ? 1_555 B GLU 127 N ? ? B MSE 125 B GLU 126 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale12 covale both ? B GLU 142 C ? ? ? 1_555 B MSE 143 N ? ? B GLU 141 B MSE 142 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? B MSE 143 C ? ? ? 1_555 B GLY 144 N ? ? B MSE 142 B GLY 143 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 105 ? ILE A 106 ? GLU A 104 ILE A 105 A 2 VAL A 116 ? THR A 117 ? VAL A 115 THR A 116 B 1 GLU B 105 ? ILE B 106 ? GLU B 104 ILE B 105 B 2 VAL B 116 ? THR B 117 ? VAL B 115 THR B 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 106 ? N ILE A 105 O VAL A 116 ? O VAL A 115 B 1 2 N ILE B 106 ? N ILE B 105 O VAL B 116 ? O VAL B 115 # _atom_sites.entry_id 3DKA _atom_sites.fract_transf_matrix[1][1] 0.017334 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015788 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012186 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 CYS 3 2 ? ? ? A . n A 1 4 GLN 4 3 ? ? ? A . n A 1 5 SER 5 4 ? ? ? A . n A 1 6 ASN 6 5 5 ASN ASN A . n A 1 7 GLN 7 6 6 GLN GLN A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 HIS 11 10 10 HIS HIS A . n A 1 12 PHE 12 11 11 PHE PHE A . n A 1 13 LEU 13 12 12 LEU LEU A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 HIS 15 14 14 HIS HIS A . n A 1 16 ARG 16 15 15 ARG ARG A . n A 1 17 ASN 17 16 16 ASN ASN A . n A 1 18 VAL 18 17 17 VAL VAL A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 ASN 20 19 19 ASN ASN A . n A 1 21 GLU 21 20 20 GLU GLU A . n A 1 22 LEU 22 21 21 LEU LEU A . n A 1 23 ALA 23 22 22 ALA ALA A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 ILE 26 25 25 ILE ILE A . n A 1 27 SER 27 26 26 SER SER A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 ASP 29 28 28 ASP ASP A . n A 1 30 HIS 30 29 29 HIS HIS A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 SER 32 31 31 SER SER A . n A 1 33 TYR 33 32 32 TYR TYR A . n A 1 34 LYS 34 33 33 LYS LYS A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 MSE 40 39 39 MSE MSE A . n A 1 41 SER 41 40 40 SER SER A . n A 1 42 ALA 42 41 41 ALA ALA A . n A 1 43 GLU 43 42 42 GLU GLU A . n A 1 44 GLU 44 43 43 GLU GLU A . n A 1 45 LEU 45 44 44 LEU LEU A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 LYS 47 46 46 LYS LYS A . n A 1 48 HIS 48 47 47 HIS HIS A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 LEU 50 49 49 LEU LEU A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 PHE 53 52 52 PHE PHE A . n A 1 54 HIS 54 53 53 HIS HIS A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 PHE 56 55 55 PHE PHE A . n A 1 57 ALA 57 56 56 ALA ALA A . n A 1 58 ASN 58 57 57 ASN ASN A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 ILE 60 59 59 ILE ILE A . n A 1 61 LYS 61 60 60 LYS LYS A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 GLY 63 62 62 GLY GLY A . n A 1 64 ASN 64 63 63 ASN ASN A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 PRO 67 66 66 PRO PRO A . n A 1 68 PHE 68 67 67 PHE PHE A . n A 1 69 GLN 69 68 68 GLN GLN A . n A 1 70 ASN 70 69 69 ASN ASN A . n A 1 71 LYS 71 70 ? ? ? A . n A 1 72 GLN 72 71 ? ? ? A . n A 1 73 GLU 73 72 ? ? ? A . n A 1 74 GLU 74 73 ? ? ? A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 GLU 76 75 75 GLU GLU A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 THR 85 84 84 THR THR A . n A 1 86 TYR 86 85 85 TYR TYR A . n A 1 87 THR 87 86 86 THR THR A . n A 1 88 GLU 88 87 87 GLU GLU A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 THR 90 89 89 THR THR A . n A 1 91 VAL 91 90 90 VAL VAL A . n A 1 92 ALA 92 91 91 ALA ALA A . n A 1 93 ILE 93 92 92 ILE ILE A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 GLN 96 95 95 GLN GLN A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 THR 98 97 97 THR THR A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 GLU 100 99 99 GLU GLU A . n A 1 101 GLN 101 100 100 GLN GLN A . n A 1 102 LEU 102 101 101 LEU LEU A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 ASP 107 106 106 ASP ASP A . n A 1 108 LEU 108 107 ? ? ? A . n A 1 109 THR 109 108 ? ? ? A . n A 1 110 SER 110 109 ? ? ? A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 PHE 112 111 111 PHE PHE A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 ARG 119 118 118 ARG ARG A . n A 1 120 ALA 120 119 119 ALA ALA A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 GLN 123 122 122 GLN GLN A . n A 1 124 LEU 124 123 123 LEU LEU A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 MSE 126 125 125 MSE MSE A . n A 1 127 GLU 127 126 126 GLU GLU A . n A 1 128 HIS 128 127 127 HIS HIS A . n A 1 129 GLU 129 128 128 GLU GLU A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 HIS 131 130 130 HIS HIS A . n A 1 132 HIS 132 131 131 HIS HIS A . n A 1 133 LYS 133 132 132 LYS LYS A . n A 1 134 GLY 134 133 133 GLY GLY A . n A 1 135 ASN 135 134 134 ASN ASN A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 PHE 137 136 136 PHE PHE A . n A 1 138 VAL 138 137 137 VAL VAL A . n A 1 139 TYR 139 138 138 TYR TYR A . n A 1 140 VAL 140 139 139 VAL VAL A . n A 1 141 ARG 141 140 140 ARG ARG A . n A 1 142 GLU 142 141 141 GLU GLU A . n A 1 143 MSE 143 142 142 MSE MSE A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 HIS 145 144 144 HIS HIS A . n A 1 146 THR 146 145 145 THR THR A . n A 1 147 GLU 147 146 146 GLU GLU A . n A 1 148 LEU 148 147 147 LEU LEU A . n A 1 149 PRO 149 148 148 PRO PRO A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 TYR 151 150 150 TYR TYR A . n A 1 152 GLN 152 151 151 GLN GLN A . n A 1 153 GLN 153 152 152 GLN GLN A . n A 1 154 ARG 154 153 153 ARG ARG A . n A 1 155 MSE 155 154 154 MSE MSE A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 ? ? ? B . n B 1 3 CYS 3 2 ? ? ? B . n B 1 4 GLN 4 3 ? ? ? B . n B 1 5 SER 5 4 ? ? ? B . n B 1 6 ASN 6 5 5 ASN ASN B . n B 1 7 GLN 7 6 6 GLN GLN B . n B 1 8 ILE 8 7 7 ILE ILE B . n B 1 9 VAL 9 8 8 VAL VAL B . n B 1 10 SER 10 9 9 SER SER B . n B 1 11 HIS 11 10 10 HIS HIS B . n B 1 12 PHE 12 11 11 PHE PHE B . n B 1 13 LEU 13 12 12 LEU LEU B . n B 1 14 SER 14 13 13 SER SER B . n B 1 15 HIS 15 14 14 HIS HIS B . n B 1 16 ARG 16 15 15 ARG ARG B . n B 1 17 ASN 17 16 16 ASN ASN B . n B 1 18 VAL 18 17 17 VAL VAL B . n B 1 19 THR 19 18 18 THR THR B . n B 1 20 ASN 20 19 19 ASN ASN B . n B 1 21 GLU 21 20 20 GLU GLU B . n B 1 22 LEU 22 21 21 LEU LEU B . n B 1 23 ALA 23 22 22 ALA ALA B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 LYS 25 24 24 LYS LYS B . n B 1 26 ILE 26 25 25 ILE ILE B . n B 1 27 SER 27 26 26 SER SER B . n B 1 28 LYS 28 27 27 LYS LYS B . n B 1 29 ASP 29 28 28 ASP ASP B . n B 1 30 HIS 30 29 29 HIS HIS B . n B 1 31 TYR 31 30 30 TYR TYR B . n B 1 32 SER 32 31 31 SER SER B . n B 1 33 TYR 33 32 32 TYR TYR B . n B 1 34 LYS 34 33 33 LYS LYS B . n B 1 35 PRO 35 34 34 PRO PRO B . n B 1 36 ALA 36 35 35 ALA ALA B . n B 1 37 GLU 37 36 36 GLU GLU B . n B 1 38 THR 38 37 37 THR THR B . n B 1 39 SER 39 38 38 SER SER B . n B 1 40 MSE 40 39 39 MSE MSE B . n B 1 41 SER 41 40 40 SER SER B . n B 1 42 ALA 42 41 41 ALA ALA B . n B 1 43 GLU 43 42 42 GLU GLU B . n B 1 44 GLU 44 43 43 GLU GLU B . n B 1 45 LEU 45 44 44 LEU LEU B . n B 1 46 VAL 46 45 45 VAL VAL B . n B 1 47 LYS 47 46 46 LYS LYS B . n B 1 48 HIS 48 47 47 HIS HIS B . n B 1 49 ILE 49 48 48 ILE ILE B . n B 1 50 LEU 50 49 49 LEU LEU B . n B 1 51 THR 51 50 50 THR THR B . n B 1 52 SER 52 51 51 SER SER B . n B 1 53 PHE 53 52 52 PHE PHE B . n B 1 54 HIS 54 53 53 HIS HIS B . n B 1 55 LEU 55 54 54 LEU LEU B . n B 1 56 PHE 56 55 55 PHE PHE B . n B 1 57 ALA 57 56 56 ALA ALA B . n B 1 58 ASN 58 57 57 ASN ASN B . n B 1 59 VAL 59 58 58 VAL VAL B . n B 1 60 ILE 60 59 59 ILE ILE B . n B 1 61 LYS 61 60 60 LYS LYS B . n B 1 62 GLU 62 61 61 GLU GLU B . n B 1 63 GLY 63 62 62 GLY GLY B . n B 1 64 ASN 64 63 63 ASN ASN B . n B 1 65 ALA 65 64 64 ALA ALA B . n B 1 66 SER 66 65 65 SER SER B . n B 1 67 PRO 67 66 66 PRO PRO B . n B 1 68 PHE 68 67 67 PHE PHE B . n B 1 69 GLN 69 68 68 GLN GLN B . n B 1 70 ASN 70 69 69 ASN ASN B . n B 1 71 LYS 71 70 70 LYS LYS B . n B 1 72 GLN 72 71 71 GLN GLN B . n B 1 73 GLU 73 72 72 GLU GLU B . n B 1 74 GLU 74 73 73 GLU GLU B . n B 1 75 THR 75 74 74 THR THR B . n B 1 76 GLU 76 75 75 GLU GLU B . n B 1 77 THR 77 76 76 THR THR B . n B 1 78 ASP 78 77 77 ASP ASP B . n B 1 79 LEU 79 78 78 LEU LEU B . n B 1 80 ASN 80 79 79 ASN ASN B . n B 1 81 VAL 81 80 80 VAL VAL B . n B 1 82 LEU 82 81 81 LEU LEU B . n B 1 83 ALA 83 82 82 ALA ALA B . n B 1 84 LYS 84 83 83 LYS LYS B . n B 1 85 THR 85 84 84 THR THR B . n B 1 86 TYR 86 85 85 TYR TYR B . n B 1 87 THR 87 86 86 THR THR B . n B 1 88 GLU 88 87 87 GLU GLU B . n B 1 89 LYS 89 88 88 LYS LYS B . n B 1 90 THR 90 89 89 THR THR B . n B 1 91 VAL 91 90 90 VAL VAL B . n B 1 92 ALA 92 91 91 ALA ALA B . n B 1 93 ILE 93 92 92 ILE ILE B . n B 1 94 LEU 94 93 93 LEU LEU B . n B 1 95 GLU 95 94 94 GLU GLU B . n B 1 96 GLN 96 95 95 GLN GLN B . n B 1 97 LEU 97 96 96 LEU LEU B . n B 1 98 THR 98 97 97 THR THR B . n B 1 99 GLU 99 98 98 GLU GLU B . n B 1 100 GLU 100 99 99 GLU GLU B . n B 1 101 GLN 101 100 100 GLN GLN B . n B 1 102 LEU 102 101 101 LEU LEU B . n B 1 103 ASP 103 102 102 ASP ASP B . n B 1 104 ARG 104 103 103 ARG ARG B . n B 1 105 GLU 105 104 104 GLU GLU B . n B 1 106 ILE 106 105 105 ILE ILE B . n B 1 107 ASP 107 106 106 ASP ASP B . n B 1 108 LEU 108 107 107 LEU LEU B . n B 1 109 THR 109 108 108 THR THR B . n B 1 110 SER 110 109 ? ? ? B . n B 1 111 ALA 111 110 ? ? ? B . n B 1 112 PHE 112 111 ? ? ? B . n B 1 113 GLY 113 112 ? ? ? B . n B 1 114 ARG 114 113 ? ? ? B . n B 1 115 LYS 115 114 114 LYS LYS B . n B 1 116 VAL 116 115 115 VAL VAL B . n B 1 117 THR 117 116 116 THR THR B . n B 1 118 GLY 118 117 117 GLY GLY B . n B 1 119 ARG 119 118 118 ARG ARG B . n B 1 120 ALA 120 119 119 ALA ALA B . n B 1 121 LEU 121 120 120 LEU LEU B . n B 1 122 LEU 122 121 121 LEU LEU B . n B 1 123 GLN 123 122 122 GLN GLN B . n B 1 124 LEU 124 123 123 LEU LEU B . n B 1 125 ALA 125 124 124 ALA ALA B . n B 1 126 MSE 126 125 125 MSE MSE B . n B 1 127 GLU 127 126 126 GLU GLU B . n B 1 128 HIS 128 127 127 HIS HIS B . n B 1 129 GLU 129 128 128 GLU GLU B . n B 1 130 ILE 130 129 129 ILE ILE B . n B 1 131 HIS 131 130 130 HIS HIS B . n B 1 132 HIS 132 131 131 HIS HIS B . n B 1 133 LYS 133 132 132 LYS LYS B . n B 1 134 GLY 134 133 133 GLY GLY B . n B 1 135 ASN 135 134 134 ASN ASN B . n B 1 136 LEU 136 135 135 LEU LEU B . n B 1 137 PHE 137 136 136 PHE PHE B . n B 1 138 VAL 138 137 137 VAL VAL B . n B 1 139 TYR 139 138 138 TYR TYR B . n B 1 140 VAL 140 139 139 VAL VAL B . n B 1 141 ARG 141 140 140 ARG ARG B . n B 1 142 GLU 142 141 141 GLU GLU B . n B 1 143 MSE 143 142 142 MSE MSE B . n B 1 144 GLY 144 143 143 GLY GLY B . n B 1 145 HIS 145 144 144 HIS HIS B . n B 1 146 THR 146 145 145 THR THR B . n B 1 147 GLU 147 146 146 GLU GLU B . n B 1 148 LEU 148 147 147 LEU LEU B . n B 1 149 PRO 149 148 148 PRO PRO B . n B 1 150 PHE 150 149 149 PHE PHE B . n B 1 151 TYR 151 150 150 TYR TYR B . n B 1 152 GLN 152 151 151 GLN GLN B . n B 1 153 GLN 153 152 152 GLN GLN B . n B 1 154 ARG 154 153 153 ARG ARG B . n B 1 155 MSE 155 154 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 155 1 CL CL A . D 3 HOH 1 156 2 HOH HOH A . D 3 HOH 2 157 4 HOH HOH A . D 3 HOH 3 158 5 HOH HOH A . D 3 HOH 4 159 6 HOH HOH A . D 3 HOH 5 160 8 HOH HOH A . D 3 HOH 6 161 10 HOH HOH A . D 3 HOH 7 162 12 HOH HOH A . D 3 HOH 8 163 13 HOH HOH A . D 3 HOH 9 164 18 HOH HOH A . D 3 HOH 10 165 19 HOH HOH A . D 3 HOH 11 166 21 HOH HOH A . D 3 HOH 12 167 22 HOH HOH A . D 3 HOH 13 168 25 HOH HOH A . D 3 HOH 14 169 26 HOH HOH A . D 3 HOH 15 170 28 HOH HOH A . D 3 HOH 16 171 30 HOH HOH A . D 3 HOH 17 172 31 HOH HOH A . D 3 HOH 18 173 32 HOH HOH A . D 3 HOH 19 174 33 HOH HOH A . D 3 HOH 20 175 34 HOH HOH A . D 3 HOH 21 176 39 HOH HOH A . D 3 HOH 22 177 40 HOH HOH A . D 3 HOH 23 178 41 HOH HOH A . D 3 HOH 24 179 51 HOH HOH A . D 3 HOH 25 180 57 HOH HOH A . D 3 HOH 26 181 60 HOH HOH A . D 3 HOH 27 182 62 HOH HOH A . D 3 HOH 28 183 63 HOH HOH A . D 3 HOH 29 184 66 HOH HOH A . D 3 HOH 30 185 67 HOH HOH A . D 3 HOH 31 186 68 HOH HOH A . D 3 HOH 32 187 69 HOH HOH A . D 3 HOH 33 188 70 HOH HOH A . D 3 HOH 34 189 71 HOH HOH A . D 3 HOH 35 190 73 HOH HOH A . D 3 HOH 36 191 76 HOH HOH A . D 3 HOH 37 192 78 HOH HOH A . D 3 HOH 38 193 81 HOH HOH A . D 3 HOH 39 194 82 HOH HOH A . D 3 HOH 40 195 83 HOH HOH A . D 3 HOH 41 196 84 HOH HOH A . D 3 HOH 42 197 87 HOH HOH A . D 3 HOH 43 198 88 HOH HOH A . D 3 HOH 44 199 89 HOH HOH A . D 3 HOH 45 200 93 HOH HOH A . D 3 HOH 46 201 95 HOH HOH A . D 3 HOH 47 202 97 HOH HOH A . D 3 HOH 48 203 98 HOH HOH A . D 3 HOH 49 204 99 HOH HOH A . E 3 HOH 1 155 3 HOH HOH B . E 3 HOH 2 156 7 HOH HOH B . E 3 HOH 3 157 9 HOH HOH B . E 3 HOH 4 158 11 HOH HOH B . E 3 HOH 5 159 14 HOH HOH B . E 3 HOH 6 160 15 HOH HOH B . E 3 HOH 7 161 16 HOH HOH B . E 3 HOH 8 162 17 HOH HOH B . E 3 HOH 9 163 20 HOH HOH B . E 3 HOH 10 164 23 HOH HOH B . E 3 HOH 11 165 24 HOH HOH B . E 3 HOH 12 166 27 HOH HOH B . E 3 HOH 13 167 29 HOH HOH B . E 3 HOH 14 168 35 HOH HOH B . E 3 HOH 15 169 36 HOH HOH B . E 3 HOH 16 170 37 HOH HOH B . E 3 HOH 17 171 38 HOH HOH B . E 3 HOH 18 172 42 HOH HOH B . E 3 HOH 19 173 43 HOH HOH B . E 3 HOH 20 174 44 HOH HOH B . E 3 HOH 21 175 45 HOH HOH B . E 3 HOH 22 176 46 HOH HOH B . E 3 HOH 23 177 47 HOH HOH B . E 3 HOH 24 178 48 HOH HOH B . E 3 HOH 25 179 49 HOH HOH B . E 3 HOH 26 180 50 HOH HOH B . E 3 HOH 27 181 52 HOH HOH B . E 3 HOH 28 182 53 HOH HOH B . E 3 HOH 29 183 54 HOH HOH B . E 3 HOH 30 184 55 HOH HOH B . E 3 HOH 31 185 56 HOH HOH B . E 3 HOH 32 186 58 HOH HOH B . E 3 HOH 33 187 59 HOH HOH B . E 3 HOH 34 188 61 HOH HOH B . E 3 HOH 35 189 64 HOH HOH B . E 3 HOH 36 190 65 HOH HOH B . E 3 HOH 37 191 72 HOH HOH B . E 3 HOH 38 192 74 HOH HOH B . E 3 HOH 39 193 75 HOH HOH B . E 3 HOH 40 194 77 HOH HOH B . E 3 HOH 41 195 79 HOH HOH B . E 3 HOH 42 196 80 HOH HOH B . E 3 HOH 43 197 85 HOH HOH B . E 3 HOH 44 198 86 HOH HOH B . E 3 HOH 45 199 90 HOH HOH B . E 3 HOH 46 200 91 HOH HOH B . E 3 HOH 47 201 92 HOH HOH B . E 3 HOH 48 202 94 HOH HOH B . E 3 HOH 49 203 96 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 40 A MSE 39 ? MET SELENOMETHIONINE 2 A MSE 126 A MSE 125 ? MET SELENOMETHIONINE 3 A MSE 143 A MSE 142 ? MET SELENOMETHIONINE 4 A MSE 155 A MSE 154 ? MET SELENOMETHIONINE 5 B MSE 40 B MSE 39 ? MET SELENOMETHIONINE 6 B MSE 126 B MSE 125 ? MET SELENOMETHIONINE 7 B MSE 143 B MSE 142 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1880 ? 1 MORE -11 ? 1 'SSA (A^2)' 14180 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 17.7978 36.2709 18.3858 -0.0656 -0.0319 -0.0223 0.0059 -0.0026 -0.0036 0.7332 1.0220 2.4037 0.2212 -0.2770 -0.4726 -0.0481 0.0822 -0.0341 0.0144 0.0834 0.1071 -0.0617 -0.1075 -0.1458 'X-RAY DIFFRACTION' 2 ? refined 37.8085 37.5655 28.0478 -0.0432 -0.0686 -0.0105 -0.0303 -0.0031 -0.0216 1.3254 0.2585 2.9029 -0.3565 -1.5279 -0.0198 -0.0561 0.0465 0.0096 -0.0141 0.0528 -0.1325 0.1019 0.0032 0.0979 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 6 A 155 ? A 5 A 154 'X-RAY DIFFRACTION' ? 2 2 B 6 B 154 ? B 5 B 153 'X-RAY DIFFRACTION' ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3DKA _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 113 ? ? -122.61 -143.72 2 1 LYS A 114 ? ? -173.60 146.20 3 1 ASN B 69 ? ? -69.96 95.31 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 6 ? CD ? A GLN 7 CD 2 1 Y 1 A GLN 6 ? OE1 ? A GLN 7 OE1 3 1 Y 1 A GLN 6 ? NE2 ? A GLN 7 NE2 4 1 Y 1 A ASN 69 ? CG ? A ASN 70 CG 5 1 Y 1 A ASN 69 ? OD1 ? A ASN 70 OD1 6 1 Y 1 A ASN 69 ? ND2 ? A ASN 70 ND2 7 1 Y 1 A THR 74 ? OG1 ? A THR 75 OG1 8 1 Y 1 A THR 74 ? CG2 ? A THR 75 CG2 9 1 Y 1 A ASP 106 ? CG ? A ASP 107 CG 10 1 Y 1 A ASP 106 ? OD1 ? A ASP 107 OD1 11 1 Y 1 A ASP 106 ? OD2 ? A ASP 107 OD2 12 1 Y 1 A PHE 111 ? CG ? A PHE 112 CG 13 1 Y 1 A PHE 111 ? CD1 ? A PHE 112 CD1 14 1 Y 1 A PHE 111 ? CD2 ? A PHE 112 CD2 15 1 Y 1 A PHE 111 ? CE1 ? A PHE 112 CE1 16 1 Y 1 A PHE 111 ? CE2 ? A PHE 112 CE2 17 1 Y 1 A PHE 111 ? CZ ? A PHE 112 CZ 18 1 Y 1 A ARG 113 ? CD ? A ARG 114 CD 19 1 Y 1 A ARG 113 ? NE ? A ARG 114 NE 20 1 Y 1 A ARG 113 ? CZ ? A ARG 114 CZ 21 1 Y 1 A ARG 113 ? NH1 ? A ARG 114 NH1 22 1 Y 1 A ARG 113 ? NH2 ? A ARG 114 NH2 23 1 Y 1 B GLN 6 ? CG ? B GLN 7 CG 24 1 Y 1 B GLN 6 ? CD ? B GLN 7 CD 25 1 Y 1 B GLN 6 ? OE1 ? B GLN 7 OE1 26 1 Y 1 B GLN 6 ? NE2 ? B GLN 7 NE2 27 1 Y 1 B ASN 69 ? CG ? B ASN 70 CG 28 1 Y 1 B ASN 69 ? OD1 ? B ASN 70 OD1 29 1 Y 1 B ASN 69 ? ND2 ? B ASN 70 ND2 30 1 Y 1 B LYS 70 ? CG ? B LYS 71 CG 31 1 Y 1 B LYS 70 ? CD ? B LYS 71 CD 32 1 Y 1 B LYS 70 ? CE ? B LYS 71 CE 33 1 Y 1 B LYS 70 ? NZ ? B LYS 71 NZ 34 1 Y 1 B GLN 71 ? CG ? B GLN 72 CG 35 1 Y 1 B GLN 71 ? CD ? B GLN 72 CD 36 1 Y 1 B GLN 71 ? OE1 ? B GLN 72 OE1 37 1 Y 1 B GLN 71 ? NE2 ? B GLN 72 NE2 38 1 Y 1 B GLU 72 ? CG ? B GLU 73 CG 39 1 Y 1 B GLU 72 ? CD ? B GLU 73 CD 40 1 Y 1 B GLU 72 ? OE1 ? B GLU 73 OE1 41 1 Y 1 B GLU 72 ? OE2 ? B GLU 73 OE2 42 1 Y 1 B THR 74 ? OG1 ? B THR 75 OG1 43 1 Y 1 B THR 74 ? CG2 ? B THR 75 CG2 44 1 Y 1 B LYS 114 ? CG ? B LYS 115 CG 45 1 Y 1 B LYS 114 ? CD ? B LYS 115 CD 46 1 Y 1 B LYS 114 ? CE ? B LYS 115 CE 47 1 Y 1 B LYS 114 ? NZ ? B LYS 115 NZ 48 1 Y 1 B ARG 153 ? CG ? B ARG 154 CG 49 1 Y 1 B ARG 153 ? CD ? B ARG 154 CD 50 1 Y 1 B ARG 153 ? NE ? B ARG 154 NE 51 1 Y 1 B ARG 153 ? CZ ? B ARG 154 CZ 52 1 Y 1 B ARG 153 ? NH1 ? B ARG 154 NH1 53 1 Y 1 B ARG 153 ? NH2 ? B ARG 154 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A CYS 2 ? A CYS 3 4 1 Y 1 A GLN 3 ? A GLN 4 5 1 Y 1 A SER 4 ? A SER 5 6 1 Y 1 A LYS 70 ? A LYS 71 7 1 Y 1 A GLN 71 ? A GLN 72 8 1 Y 1 A GLU 72 ? A GLU 73 9 1 Y 1 A GLU 73 ? A GLU 74 10 1 Y 1 A LEU 107 ? A LEU 108 11 1 Y 1 A THR 108 ? A THR 109 12 1 Y 1 A SER 109 ? A SER 110 13 1 Y 1 B GLY 0 ? B GLY 1 14 1 Y 1 B MSE 1 ? B MSE 2 15 1 Y 1 B CYS 2 ? B CYS 3 16 1 Y 1 B GLN 3 ? B GLN 4 17 1 Y 1 B SER 4 ? B SER 5 18 1 Y 1 B SER 109 ? B SER 110 19 1 Y 1 B ALA 110 ? B ALA 111 20 1 Y 1 B PHE 111 ? B PHE 112 21 1 Y 1 B GLY 112 ? B GLY 113 22 1 Y 1 B ARG 113 ? B ARG 114 23 1 Y 1 B MSE 154 ? B MSE 155 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #