HEADER UNKNOWN FUNCTION 24-JUN-08 3DKA TITLE CRYSTAL STRUCTURE OF A DINB-LIKE PROTEIN (YJOA, BSU12410) FROM TITLE 2 BACILLUS SUBTILIS AT 2.30 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DINB-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: NP_389123.1, YJOA, BSU12410; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS DINB/YFIT-LIKE PUTATIVE METALLOENZYME FOLD, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3DKA 1 SEQADV REVDAT 6 24-JUL-19 3DKA 1 REMARK LINK REVDAT 5 25-OCT-17 3DKA 1 REMARK REVDAT 4 13-JUL-11 3DKA 1 VERSN REVDAT 3 23-MAR-11 3DKA 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 3DKA 1 VERSN REVDAT 1 19-AUG-08 3DKA 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A DINB-LIKE PROTEIN (NP_389123.1) FROM JRNL TITL 2 BACILLUS SUBTILIS AT 2.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 13568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 677 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1225 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.39000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.437 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.193 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2343 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1532 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3168 ; 1.073 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3763 ; 0.839 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 4.557 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;33.959 ;25.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;13.550 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.103 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2587 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 519 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1538 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1131 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1140 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.105 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 18 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1511 ; 1.304 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 577 ; 0.211 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2308 ; 2.082 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 953 ; 3.402 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 858 ; 4.632 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 67 2 REMARK 3 1 B 5 B 67 2 REMARK 3 2 A 68 A 69 4 REMARK 3 2 B 68 B 69 4 REMARK 3 3 A 70 A 152 2 REMARK 3 3 B 70 B 152 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 798 ; 0.070 ; 0.100 REMARK 3 MEDIUM POSITIONAL 1 A (A): 1007 ; 0.250 ; 0.400 REMARK 3 TIGHT THERMAL 1 A (A**2): 798 ; 0.070 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1007 ; 0.280 ; 1.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 154 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7978 36.2709 18.3858 REMARK 3 T TENSOR REMARK 3 T11: -0.0656 T22: -0.0319 REMARK 3 T33: -0.0223 T12: 0.0059 REMARK 3 T13: -0.0026 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.7332 L22: 1.0220 REMARK 3 L33: 2.4037 L12: 0.2212 REMARK 3 L13: -0.2770 L23: -0.4726 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: 0.0144 S13: 0.0834 REMARK 3 S21: -0.0617 S22: 0.0822 S23: 0.1071 REMARK 3 S31: -0.1075 S32: -0.1458 S33: -0.0341 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8085 37.5655 28.0478 REMARK 3 T TENSOR REMARK 3 T11: -0.0432 T22: -0.0686 REMARK 3 T33: -0.0105 T12: -0.0303 REMARK 3 T13: -0.0031 T23: -0.0216 REMARK 3 L TENSOR REMARK 3 L11: 1.3254 L22: 0.2585 REMARK 3 L33: 2.9029 L12: -0.3565 REMARK 3 L13: -1.5279 L23: -0.0198 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: -0.0141 S13: 0.0528 REMARK 3 S21: 0.1019 S22: 0.0465 S23: -0.1325 REMARK 3 S31: 0.0032 S32: 0.0979 S33: 0.0096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 3DKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000048143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97956,0.97904 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13596 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.566 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 3.630 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NH4OAC, 30.0000% PEG-4000, REMARK 280 0.1M CITRATE PH 5.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.84500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.03000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.03000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 CYS A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 LYS A 70 REMARK 465 GLN A 71 REMARK 465 GLU A 72 REMARK 465 GLU A 73 REMARK 465 LEU A 107 REMARK 465 THR A 108 REMARK 465 SER A 109 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 CYS B 2 REMARK 465 GLN B 3 REMARK 465 SER B 4 REMARK 465 SER B 109 REMARK 465 ALA B 110 REMARK 465 PHE B 111 REMARK 465 GLY B 112 REMARK 465 ARG B 113 REMARK 465 MSE B 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CD OE1 NE2 REMARK 470 ASN A 69 CG OD1 ND2 REMARK 470 THR A 74 OG1 CG2 REMARK 470 ASP A 106 CG OD1 OD2 REMARK 470 PHE A 111 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 113 CD NE CZ NH1 NH2 REMARK 470 GLN B 6 CG CD OE1 NE2 REMARK 470 ASN B 69 CG OD1 ND2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 GLN B 71 CG CD OE1 NE2 REMARK 470 GLU B 72 CG CD OE1 OE2 REMARK 470 THR B 74 OG1 CG2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 113 -143.72 -122.61 REMARK 500 LYS A 114 146.20 -173.60 REMARK 500 ASN B 69 95.31 -69.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 389728 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3DKA A 1 154 UNP O34334 YJOA_BACSU 1 154 DBREF 3DKA B 1 154 UNP O34334 YJOA_BACSU 1 154 SEQADV 3DKA GLY A 0 UNP O34334 EXPRESSION TAG SEQADV 3DKA GLY B 0 UNP O34334 EXPRESSION TAG SEQRES 1 A 155 GLY MSE CYS GLN SER ASN GLN ILE VAL SER HIS PHE LEU SEQRES 2 A 155 SER HIS ARG ASN VAL THR ASN GLU LEU ALA GLU LYS ILE SEQRES 3 A 155 SER LYS ASP HIS TYR SER TYR LYS PRO ALA GLU THR SER SEQRES 4 A 155 MSE SER ALA GLU GLU LEU VAL LYS HIS ILE LEU THR SER SEQRES 5 A 155 PHE HIS LEU PHE ALA ASN VAL ILE LYS GLU GLY ASN ALA SEQRES 6 A 155 SER PRO PHE GLN ASN LYS GLN GLU GLU THR GLU THR ASP SEQRES 7 A 155 LEU ASN VAL LEU ALA LYS THR TYR THR GLU LYS THR VAL SEQRES 8 A 155 ALA ILE LEU GLU GLN LEU THR GLU GLU GLN LEU ASP ARG SEQRES 9 A 155 GLU ILE ASP LEU THR SER ALA PHE GLY ARG LYS VAL THR SEQRES 10 A 155 GLY ARG ALA LEU LEU GLN LEU ALA MSE GLU HIS GLU ILE SEQRES 11 A 155 HIS HIS LYS GLY ASN LEU PHE VAL TYR VAL ARG GLU MSE SEQRES 12 A 155 GLY HIS THR GLU LEU PRO PHE TYR GLN GLN ARG MSE SEQRES 1 B 155 GLY MSE CYS GLN SER ASN GLN ILE VAL SER HIS PHE LEU SEQRES 2 B 155 SER HIS ARG ASN VAL THR ASN GLU LEU ALA GLU LYS ILE SEQRES 3 B 155 SER LYS ASP HIS TYR SER TYR LYS PRO ALA GLU THR SER SEQRES 4 B 155 MSE SER ALA GLU GLU LEU VAL LYS HIS ILE LEU THR SER SEQRES 5 B 155 PHE HIS LEU PHE ALA ASN VAL ILE LYS GLU GLY ASN ALA SEQRES 6 B 155 SER PRO PHE GLN ASN LYS GLN GLU GLU THR GLU THR ASP SEQRES 7 B 155 LEU ASN VAL LEU ALA LYS THR TYR THR GLU LYS THR VAL SEQRES 8 B 155 ALA ILE LEU GLU GLN LEU THR GLU GLU GLN LEU ASP ARG SEQRES 9 B 155 GLU ILE ASP LEU THR SER ALA PHE GLY ARG LYS VAL THR SEQRES 10 B 155 GLY ARG ALA LEU LEU GLN LEU ALA MSE GLU HIS GLU ILE SEQRES 11 B 155 HIS HIS LYS GLY ASN LEU PHE VAL TYR VAL ARG GLU MSE SEQRES 12 B 155 GLY HIS THR GLU LEU PRO PHE TYR GLN GLN ARG MSE MODRES 3DKA MSE A 39 MET SELENOMETHIONINE MODRES 3DKA MSE A 125 MET SELENOMETHIONINE MODRES 3DKA MSE A 142 MET SELENOMETHIONINE MODRES 3DKA MSE A 154 MET SELENOMETHIONINE MODRES 3DKA MSE B 39 MET SELENOMETHIONINE MODRES 3DKA MSE B 125 MET SELENOMETHIONINE MODRES 3DKA MSE B 142 MET SELENOMETHIONINE HET MSE A 39 8 HET MSE A 125 8 HET MSE A 142 8 HET MSE A 154 9 HET MSE B 39 8 HET MSE B 125 8 HET MSE B 142 8 HET CL A 155 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 HOH *98(H2 O) HELIX 1 1 ASN A 5 GLU A 23 1 19 HELIX 2 2 SER A 40 GLY A 62 1 23 HELIX 3 3 ALA A 64 GLN A 68 5 5 HELIX 4 4 ASP A 77 GLN A 95 1 19 HELIX 5 5 THR A 97 ARG A 103 1 7 HELIX 6 6 GLY A 117 MSE A 142 1 26 HELIX 7 7 ASN B 5 LYS B 24 1 20 HELIX 8 8 ILE B 25 TYR B 30 5 6 HELIX 9 9 SER B 40 GLY B 62 1 23 HELIX 10 10 ALA B 64 GLN B 68 5 5 HELIX 11 11 ASP B 77 GLU B 94 1 18 HELIX 12 12 THR B 97 ARG B 103 1 7 HELIX 13 13 GLY B 117 MSE B 142 1 26 SHEET 1 A 2 GLU A 104 ILE A 105 0 SHEET 2 A 2 VAL A 115 THR A 116 -1 O VAL A 115 N ILE A 105 SHEET 1 B 2 GLU B 104 ILE B 105 0 SHEET 2 B 2 VAL B 115 THR B 116 -1 O VAL B 115 N ILE B 105 LINK C SER A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N SER A 40 1555 1555 1.33 LINK C ALA A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N GLU A 126 1555 1555 1.33 LINK C GLU A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLY A 143 1555 1555 1.33 LINK C ARG A 153 N MSE A 154 1555 1555 1.33 LINK C SER B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N SER B 40 1555 1555 1.33 LINK C ALA B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N GLU B 126 1555 1555 1.33 LINK C GLU B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLY B 143 1555 1555 1.33 CRYST1 57.690 63.340 82.060 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012186 0.00000