data_3DKZ # _entry.id 3DKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DKZ RCSB RCSB048168 WWPDB D_1000048168 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id BpR208C _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DKZ _pdbx_database_status.recvd_initial_deposition_date 2008-06-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vorobiev, S.M.' 1 'Su, M.' 2 'Seetharaman, J.' 3 'Wang, D.' 4 'Ciccosanti, C.' 5 'Foote, E.L.' 6 'Mao, L.' 7 'Xiao, R.' 8 'Acton, T.B.' 9 'Montelione, G.T.' 10 'Hunt, J.F.' 11 'Tong, L.' 12 'Northeast Structural Genomics Consortium (NESG)' 13 # _citation.id primary _citation.title 'Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vorobiev, S.M.' 1 primary 'Su, M.' 2 primary 'Seetharaman, J.' 3 primary 'Wang, D.' 4 primary 'Ciccosanti, C.' 5 primary 'Foote, E.L.' 6 primary 'Mao, L.' 7 primary 'Xiao, R.' 8 primary 'Acton, T.B.' 9 primary 'Montelione, G.T.' 10 primary 'Hunt, J.F.' 11 primary 'Tong, L.' 12 # _cell.entry_id 3DKZ _cell.length_a 69.646 _cell.length_b 69.646 _cell.length_c 107.792 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DKZ _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thioesterase superfamily protein' 15581.942 2 ? ? ? ? 2 water nat water 18.015 68 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)STPHTDFFGLTIPF(MSE)QLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTL(MSE)SVLDFTLGAAIRGD TPEVGVATID(MSE)NTSF(MSE)SPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQRRPGLEHHHH HH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMN TSFMSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQRRPGLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier BpR208C # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 SER n 1 3 THR n 1 4 PRO n 1 5 HIS n 1 6 THR n 1 7 ASP n 1 8 PHE n 1 9 PHE n 1 10 GLY n 1 11 LEU n 1 12 THR n 1 13 ILE n 1 14 PRO n 1 15 PHE n 1 16 MSE n 1 17 GLN n 1 18 LEU n 1 19 LEU n 1 20 GLY n 1 21 VAL n 1 22 VAL n 1 23 PRO n 1 24 GLU n 1 25 HIS n 1 26 SER n 1 27 GLY n 1 28 ASN n 1 29 GLY n 1 30 THR n 1 31 ALA n 1 32 ARG n 1 33 THR n 1 34 ARG n 1 35 LEU n 1 36 PRO n 1 37 ALA n 1 38 ARG n 1 39 ALA n 1 40 ASP n 1 41 LEU n 1 42 VAL n 1 43 ASN n 1 44 SER n 1 45 ARG n 1 46 GLY n 1 47 ASP n 1 48 ILE n 1 49 HIS n 1 50 GLY n 1 51 GLY n 1 52 THR n 1 53 LEU n 1 54 MSE n 1 55 SER n 1 56 VAL n 1 57 LEU n 1 58 ASP n 1 59 PHE n 1 60 THR n 1 61 LEU n 1 62 GLY n 1 63 ALA n 1 64 ALA n 1 65 ILE n 1 66 ARG n 1 67 GLY n 1 68 ASP n 1 69 THR n 1 70 PRO n 1 71 GLU n 1 72 VAL n 1 73 GLY n 1 74 VAL n 1 75 ALA n 1 76 THR n 1 77 ILE n 1 78 ASP n 1 79 MSE n 1 80 ASN n 1 81 THR n 1 82 SER n 1 83 PHE n 1 84 MSE n 1 85 SER n 1 86 PRO n 1 87 GLY n 1 88 ARG n 1 89 GLY n 1 90 ASP n 1 91 LEU n 1 92 VAL n 1 93 ILE n 1 94 GLU n 1 95 THR n 1 96 ARG n 1 97 CYS n 1 98 LEU n 1 99 ARG n 1 100 ARG n 1 101 GLY n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ALA n 1 106 PHE n 1 107 CYS n 1 108 GLU n 1 109 GLY n 1 110 GLU n 1 111 ILE n 1 112 ARG n 1 113 ASP n 1 114 SER n 1 115 ALA n 1 116 GLY n 1 117 GLU n 1 118 LEU n 1 119 VAL n 1 120 ALA n 1 121 LYS n 1 122 ALA n 1 123 THR n 1 124 ALA n 1 125 THR n 1 126 PHE n 1 127 LYS n 1 128 ILE n 1 129 ILE n 1 130 GLN n 1 131 ARG n 1 132 ARG n 1 133 PRO n 1 134 GLY n 1 135 LEU n 1 136 GLU n 1 137 HIS n 1 138 HIS n 1 139 HIS n 1 140 HIS n 1 141 HIS n 1 142 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BPP1634 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '12822/ATCC BAA-587/NCTC 13253' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bordetella parapertussis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 519 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) +Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21-23C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7W9W5_BORPA _struct_ref.pdbx_db_accession Q7W9W5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMN TSFMSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQRRPG ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DKZ A 1 ? 134 ? Q7W9W5 34 ? 167 ? 34 167 2 1 3DKZ B 1 ? 134 ? Q7W9W5 34 ? 167 ? 34 167 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DKZ LEU A 135 ? UNP Q7W9W5 ? ? 'expression tag' 168 1 1 3DKZ GLU A 136 ? UNP Q7W9W5 ? ? 'expression tag' 169 2 1 3DKZ HIS A 137 ? UNP Q7W9W5 ? ? 'expression tag' 170 3 1 3DKZ HIS A 138 ? UNP Q7W9W5 ? ? 'expression tag' 171 4 1 3DKZ HIS A 139 ? UNP Q7W9W5 ? ? 'expression tag' 172 5 1 3DKZ HIS A 140 ? UNP Q7W9W5 ? ? 'expression tag' 173 6 1 3DKZ HIS A 141 ? UNP Q7W9W5 ? ? 'expression tag' 174 7 1 3DKZ HIS A 142 ? UNP Q7W9W5 ? ? 'expression tag' 175 8 2 3DKZ LEU B 135 ? UNP Q7W9W5 ? ? 'expression tag' 168 9 2 3DKZ GLU B 136 ? UNP Q7W9W5 ? ? 'expression tag' 169 10 2 3DKZ HIS B 137 ? UNP Q7W9W5 ? ? 'expression tag' 170 11 2 3DKZ HIS B 138 ? UNP Q7W9W5 ? ? 'expression tag' 171 12 2 3DKZ HIS B 139 ? UNP Q7W9W5 ? ? 'expression tag' 172 13 2 3DKZ HIS B 140 ? UNP Q7W9W5 ? ? 'expression tag' 173 14 2 3DKZ HIS B 141 ? UNP Q7W9W5 ? ? 'expression tag' 174 15 2 3DKZ HIS B 142 ? UNP Q7W9W5 ? ? 'expression tag' 175 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3DKZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'microbatch-under-oil crystallization' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details '26% PEG 4000, 0.17M ammonium sulfate, 15% glycerol, microbatch-under-oil crystallization , temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2008-06-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97907 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97907 # _reflns.entry_id 3DKZ _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.4 _reflns.number_obs 44952 _reflns.number_all 45637 _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.1 _reflns.B_iso_Wilson_estimate 45.2 _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.4 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.306 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.5 _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4595 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DKZ _refine.ls_number_reflns_obs 20030 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 720938.02 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.93 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 87.6 _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.26 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 59.4 _refine.aniso_B[1][1] 5.13 _refine.aniso_B[2][2] 5.13 _refine.aniso_B[3][3] -10.26 _refine.aniso_B[1][2] 6.90 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.347748 _refine.solvent_model_param_bsol 47.7959 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3DKZ _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.37 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.43 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1826 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 1894 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 35.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.87 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 2213 _refine_ls_shell.R_factor_R_work 0.316 _refine_ls_shell.percent_reflns_obs 62.0 _refine_ls_shell.R_factor_R_free 0.32 _refine_ls_shell.R_factor_R_free_error 0.027 _refine_ls_shell.percent_reflns_R_free 5.8 _refine_ls_shell.number_reflns_R_free 136 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 3DKZ _struct.title ;Crystal structure of the Q7W9W5_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR208C. ; _struct.pdbx_descriptor 'Thioesterase superfamily protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DKZ _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Q7W9W5, BORPA, thioesterase superfamily, PF03061, NESG, BpR208C, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, HYDROLASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 13 ? LEU A 19 ? ILE A 46 LEU A 52 1 ? 7 HELX_P HELX_P2 2 HIS A 49 ? ALA A 64 ? HIS A 82 ALA A 97 1 ? 16 HELX_P HELX_P3 3 ILE B 13 ? LEU B 19 ? ILE B 46 LEU B 52 1 ? 7 HELX_P HELX_P4 4 ARG B 38 ? VAL B 42 ? ARG B 71 VAL B 75 5 ? 5 HELX_P HELX_P5 5 HIS B 49 ? ALA B 64 ? HIS B 82 ALA B 97 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 15 C ? ? ? 1_555 A MSE 16 N ? ? A PHE 48 A MSE 49 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale ? ? A MSE 16 C ? ? ? 1_555 A GLN 17 N ? ? A MSE 49 A GLN 50 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale ? ? A LEU 53 C ? ? ? 1_555 A MSE 54 N ? ? A LEU 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.333 ? covale4 covale ? ? A MSE 54 C ? ? ? 1_555 A SER 55 N ? ? A MSE 87 A SER 88 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A ASP 78 C ? ? ? 1_555 A MSE 79 N ? ? A ASP 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 79 C ? ? ? 1_555 A ASN 80 N ? ? A MSE 112 A ASN 113 1_555 ? ? ? ? ? ? ? 1.325 ? covale7 covale ? ? A PHE 83 C ? ? ? 1_555 A MSE 84 N ? ? A PHE 116 A MSE 117 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A MSE 84 C ? ? ? 1_555 A SER 85 N ? ? A MSE 117 A SER 118 1_555 ? ? ? ? ? ? ? 1.325 ? covale9 covale ? ? B PHE 15 C ? ? ? 1_555 B MSE 16 N ? ? B PHE 48 B MSE 49 1_555 ? ? ? ? ? ? ? 1.325 ? covale10 covale ? ? B MSE 16 C ? ? ? 1_555 B GLN 17 N ? ? B MSE 49 B GLN 50 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale ? ? B LEU 53 C ? ? ? 1_555 B MSE 54 N ? ? B LEU 86 B MSE 87 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? B MSE 54 C ? ? ? 1_555 B SER 55 N ? ? B MSE 87 B SER 88 1_555 ? ? ? ? ? ? ? 1.328 ? covale13 covale ? ? B ASP 78 C ? ? ? 1_555 B MSE 79 N ? ? B ASP 111 B MSE 112 1_555 ? ? ? ? ? ? ? 1.324 ? covale14 covale ? ? B MSE 79 C ? ? ? 1_555 B ASN 80 N ? ? B MSE 112 B ASN 113 1_555 ? ? ? ? ? ? ? 1.337 ? covale15 covale ? ? B PHE 83 C ? ? ? 1_555 B MSE 84 N ? ? B PHE 116 B MSE 117 1_555 ? ? ? ? ? ? ? 1.333 ? covale16 covale ? ? B MSE 84 C ? ? ? 1_555 B SER 85 N ? ? B MSE 117 B SER 118 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 22 ? GLY A 27 ? VAL A 55 GLY A 60 A 2 THR A 30 ? LEU A 35 ? THR A 63 LEU A 68 A 3 LEU A 91 ? ARG A 100 ? LEU A 124 ARG A 133 A 4 ILE A 104 ? ASP A 113 ? ILE A 137 ASP A 146 A 5 LEU A 118 ? ILE A 128 ? LEU A 151 ILE A 161 A 6 VAL A 74 ? PHE A 83 ? VAL A 107 PHE A 116 B 1 VAL B 22 ? SER B 26 ? VAL B 55 SER B 59 B 2 THR B 30 ? LEU B 35 ? THR B 63 LEU B 68 B 3 LEU B 91 ? ARG B 100 ? LEU B 124 ARG B 133 B 4 ILE B 104 ? ARG B 112 ? ILE B 137 ARG B 145 B 5 LEU B 118 ? ILE B 129 ? LEU B 151 ILE B 162 B 6 GLY B 73 ? PHE B 83 ? GLY B 106 PHE B 116 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 24 ? N GLU A 57 O ARG A 32 ? O ARG A 65 A 2 3 N THR A 33 ? N THR A 66 O ILE A 93 ? O ILE A 126 A 3 4 N LEU A 98 ? N LEU A 131 O PHE A 106 ? O PHE A 139 A 4 5 N ILE A 111 ? N ILE A 144 O VAL A 119 ? O VAL A 152 A 5 6 O LYS A 127 ? O LYS A 160 N ALA A 75 ? N ALA A 108 B 1 2 N VAL B 22 ? N VAL B 55 O ARG B 34 ? O ARG B 67 B 2 3 N THR B 33 ? N THR B 66 O ILE B 93 ? O ILE B 126 B 3 4 N ARG B 99 ? N ARG B 132 O PHE B 106 ? O PHE B 139 B 4 5 N ILE B 111 ? N ILE B 144 O VAL B 119 ? O VAL B 152 B 5 6 O LYS B 127 ? O LYS B 160 N ALA B 75 ? N ALA B 108 # _database_PDB_matrix.entry_id 3DKZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3DKZ _atom_sites.fract_transf_matrix[1][1] 0.014358 _atom_sites.fract_transf_matrix[1][2] 0.008290 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016580 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009277 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 34 ? ? ? A . n A 1 2 SER 2 35 ? ? ? A . n A 1 3 THR 3 36 ? ? ? A . n A 1 4 PRO 4 37 ? ? ? A . n A 1 5 HIS 5 38 ? ? ? A . n A 1 6 THR 6 39 39 THR THR A . n A 1 7 ASP 7 40 40 ASP ASP A . n A 1 8 PHE 8 41 41 PHE PHE A . n A 1 9 PHE 9 42 42 PHE PHE A . n A 1 10 GLY 10 43 43 GLY GLY A . n A 1 11 LEU 11 44 44 LEU LEU A . n A 1 12 THR 12 45 45 THR THR A . n A 1 13 ILE 13 46 46 ILE ILE A . n A 1 14 PRO 14 47 47 PRO PRO A . n A 1 15 PHE 15 48 48 PHE PHE A . n A 1 16 MSE 16 49 49 MSE MSE A . n A 1 17 GLN 17 50 50 GLN GLN A . n A 1 18 LEU 18 51 51 LEU LEU A . n A 1 19 LEU 19 52 52 LEU LEU A . n A 1 20 GLY 20 53 53 GLY GLY A . n A 1 21 VAL 21 54 54 VAL VAL A . n A 1 22 VAL 22 55 55 VAL VAL A . n A 1 23 PRO 23 56 56 PRO PRO A . n A 1 24 GLU 24 57 57 GLU GLU A . n A 1 25 HIS 25 58 58 HIS HIS A . n A 1 26 SER 26 59 59 SER SER A . n A 1 27 GLY 27 60 60 GLY GLY A . n A 1 28 ASN 28 61 61 ASN ASN A . n A 1 29 GLY 29 62 62 GLY GLY A . n A 1 30 THR 30 63 63 THR THR A . n A 1 31 ALA 31 64 64 ALA ALA A . n A 1 32 ARG 32 65 65 ARG ARG A . n A 1 33 THR 33 66 66 THR THR A . n A 1 34 ARG 34 67 67 ARG ARG A . n A 1 35 LEU 35 68 68 LEU LEU A . n A 1 36 PRO 36 69 69 PRO PRO A . n A 1 37 ALA 37 70 70 ALA ALA A . n A 1 38 ARG 38 71 71 ARG ARG A . n A 1 39 ALA 39 72 72 ALA ALA A . n A 1 40 ASP 40 73 73 ASP ASP A . n A 1 41 LEU 41 74 74 LEU LEU A . n A 1 42 VAL 42 75 75 VAL VAL A . n A 1 43 ASN 43 76 76 ASN ASN A . n A 1 44 SER 44 77 77 SER SER A . n A 1 45 ARG 45 78 78 ARG ARG A . n A 1 46 GLY 46 79 79 GLY GLY A . n A 1 47 ASP 47 80 80 ASP ASP A . n A 1 48 ILE 48 81 81 ILE ILE A . n A 1 49 HIS 49 82 82 HIS HIS A . n A 1 50 GLY 50 83 83 GLY GLY A . n A 1 51 GLY 51 84 84 GLY GLY A . n A 1 52 THR 52 85 85 THR THR A . n A 1 53 LEU 53 86 86 LEU LEU A . n A 1 54 MSE 54 87 87 MSE MSE A . n A 1 55 SER 55 88 88 SER SER A . n A 1 56 VAL 56 89 89 VAL VAL A . n A 1 57 LEU 57 90 90 LEU LEU A . n A 1 58 ASP 58 91 91 ASP ASP A . n A 1 59 PHE 59 92 92 PHE PHE A . n A 1 60 THR 60 93 93 THR THR A . n A 1 61 LEU 61 94 94 LEU LEU A . n A 1 62 GLY 62 95 95 GLY GLY A . n A 1 63 ALA 63 96 96 ALA ALA A . n A 1 64 ALA 64 97 97 ALA ALA A . n A 1 65 ILE 65 98 98 ILE ILE A . n A 1 66 ARG 66 99 99 ARG ARG A . n A 1 67 GLY 67 100 100 GLY GLY A . n A 1 68 ASP 68 101 101 ASP ASP A . n A 1 69 THR 69 102 102 THR THR A . n A 1 70 PRO 70 103 103 PRO PRO A . n A 1 71 GLU 71 104 104 GLU ALA A . n A 1 72 VAL 72 105 105 VAL VAL A . n A 1 73 GLY 73 106 106 GLY GLY A . n A 1 74 VAL 74 107 107 VAL VAL A . n A 1 75 ALA 75 108 108 ALA ALA A . n A 1 76 THR 76 109 109 THR THR A . n A 1 77 ILE 77 110 110 ILE ILE A . n A 1 78 ASP 78 111 111 ASP ASP A . n A 1 79 MSE 79 112 112 MSE MSE A . n A 1 80 ASN 80 113 113 ASN ASN A . n A 1 81 THR 81 114 114 THR THR A . n A 1 82 SER 82 115 115 SER SER A . n A 1 83 PHE 83 116 116 PHE PHE A . n A 1 84 MSE 84 117 117 MSE MSE A . n A 1 85 SER 85 118 118 SER SER A . n A 1 86 PRO 86 119 119 PRO PRO A . n A 1 87 GLY 87 120 120 GLY GLY A . n A 1 88 ARG 88 121 121 ARG ARG A . n A 1 89 GLY 89 122 122 GLY GLY A . n A 1 90 ASP 90 123 123 ASP ASP A . n A 1 91 LEU 91 124 124 LEU LEU A . n A 1 92 VAL 92 125 125 VAL VAL A . n A 1 93 ILE 93 126 126 ILE ILE A . n A 1 94 GLU 94 127 127 GLU GLU A . n A 1 95 THR 95 128 128 THR THR A . n A 1 96 ARG 96 129 129 ARG ARG A . n A 1 97 CYS 97 130 130 CYS CYS A . n A 1 98 LEU 98 131 131 LEU LEU A . n A 1 99 ARG 99 132 132 ARG ARG A . n A 1 100 ARG 100 133 133 ARG ARG A . n A 1 101 GLY 101 134 134 GLY GLY A . n A 1 102 ALA 102 135 135 ALA ALA A . n A 1 103 SER 103 136 136 SER SER A . n A 1 104 ILE 104 137 137 ILE ILE A . n A 1 105 ALA 105 138 138 ALA ALA A . n A 1 106 PHE 106 139 139 PHE PHE A . n A 1 107 CYS 107 140 140 CYS CYS A . n A 1 108 GLU 108 141 141 GLU GLU A . n A 1 109 GLY 109 142 142 GLY GLY A . n A 1 110 GLU 110 143 143 GLU GLU A . n A 1 111 ILE 111 144 144 ILE ILE A . n A 1 112 ARG 112 145 145 ARG ARG A . n A 1 113 ASP 113 146 146 ASP ASP A . n A 1 114 SER 114 147 147 SER SER A . n A 1 115 ALA 115 148 148 ALA ALA A . n A 1 116 GLY 116 149 149 GLY GLY A . n A 1 117 GLU 117 150 150 GLU GLU A . n A 1 118 LEU 118 151 151 LEU LEU A . n A 1 119 VAL 119 152 152 VAL VAL A . n A 1 120 ALA 120 153 153 ALA ALA A . n A 1 121 LYS 121 154 154 LYS LYS A . n A 1 122 ALA 122 155 155 ALA ALA A . n A 1 123 THR 123 156 156 THR THR A . n A 1 124 ALA 124 157 157 ALA ALA A . n A 1 125 THR 125 158 158 THR THR A . n A 1 126 PHE 126 159 159 PHE PHE A . n A 1 127 LYS 127 160 160 LYS ALA A . n A 1 128 ILE 128 161 161 ILE ILE A . n A 1 129 ILE 129 162 162 ILE ILE A . n A 1 130 GLN 130 163 163 GLN GLN A . n A 1 131 ARG 131 164 ? ? ? A . n A 1 132 ARG 132 165 ? ? ? A . n A 1 133 PRO 133 166 ? ? ? A . n A 1 134 GLY 134 167 ? ? ? A . n A 1 135 LEU 135 168 ? ? ? A . n A 1 136 GLU 136 169 ? ? ? A . n A 1 137 HIS 137 170 ? ? ? A . n A 1 138 HIS 138 171 ? ? ? A . n A 1 139 HIS 139 172 ? ? ? A . n A 1 140 HIS 140 173 ? ? ? A . n A 1 141 HIS 141 174 ? ? ? A . n A 1 142 HIS 142 175 ? ? ? A . n B 1 1 MSE 1 34 ? ? ? B . n B 1 2 SER 2 35 ? ? ? B . n B 1 3 THR 3 36 ? ? ? B . n B 1 4 PRO 4 37 ? ? ? B . n B 1 5 HIS 5 38 ? ? ? B . n B 1 6 THR 6 39 39 THR THR B . n B 1 7 ASP 7 40 40 ASP ASP B . n B 1 8 PHE 8 41 41 PHE PHE B . n B 1 9 PHE 9 42 42 PHE PHE B . n B 1 10 GLY 10 43 43 GLY GLY B . n B 1 11 LEU 11 44 44 LEU LEU B . n B 1 12 THR 12 45 45 THR THR B . n B 1 13 ILE 13 46 46 ILE ILE B . n B 1 14 PRO 14 47 47 PRO PRO B . n B 1 15 PHE 15 48 48 PHE PHE B . n B 1 16 MSE 16 49 49 MSE MSE B . n B 1 17 GLN 17 50 50 GLN GLN B . n B 1 18 LEU 18 51 51 LEU LEU B . n B 1 19 LEU 19 52 52 LEU LEU B . n B 1 20 GLY 20 53 53 GLY GLY B . n B 1 21 VAL 21 54 54 VAL VAL B . n B 1 22 VAL 22 55 55 VAL VAL B . n B 1 23 PRO 23 56 56 PRO PRO B . n B 1 24 GLU 24 57 57 GLU GLU B . n B 1 25 HIS 25 58 58 HIS HIS B . n B 1 26 SER 26 59 59 SER SER B . n B 1 27 GLY 27 60 60 GLY GLY B . n B 1 28 ASN 28 61 61 ASN ASN B . n B 1 29 GLY 29 62 62 GLY GLY B . n B 1 30 THR 30 63 63 THR THR B . n B 1 31 ALA 31 64 64 ALA ALA B . n B 1 32 ARG 32 65 65 ARG ARG B . n B 1 33 THR 33 66 66 THR THR B . n B 1 34 ARG 34 67 67 ARG ARG B . n B 1 35 LEU 35 68 68 LEU LEU B . n B 1 36 PRO 36 69 69 PRO PRO B . n B 1 37 ALA 37 70 70 ALA ALA B . n B 1 38 ARG 38 71 71 ARG ARG B . n B 1 39 ALA 39 72 72 ALA ALA B . n B 1 40 ASP 40 73 73 ASP ASP B . n B 1 41 LEU 41 74 74 LEU LEU B . n B 1 42 VAL 42 75 75 VAL VAL B . n B 1 43 ASN 43 76 76 ASN ASN B . n B 1 44 SER 44 77 77 SER SER B . n B 1 45 ARG 45 78 78 ARG ARG B . n B 1 46 GLY 46 79 79 GLY GLY B . n B 1 47 ASP 47 80 80 ASP ASP B . n B 1 48 ILE 48 81 81 ILE ILE B . n B 1 49 HIS 49 82 82 HIS HIS B . n B 1 50 GLY 50 83 83 GLY GLY B . n B 1 51 GLY 51 84 84 GLY GLY B . n B 1 52 THR 52 85 85 THR THR B . n B 1 53 LEU 53 86 86 LEU LEU B . n B 1 54 MSE 54 87 87 MSE MSE B . n B 1 55 SER 55 88 88 SER SER B . n B 1 56 VAL 56 89 89 VAL VAL B . n B 1 57 LEU 57 90 90 LEU LEU B . n B 1 58 ASP 58 91 91 ASP ASP B . n B 1 59 PHE 59 92 92 PHE PHE B . n B 1 60 THR 60 93 93 THR THR B . n B 1 61 LEU 61 94 94 LEU LEU B . n B 1 62 GLY 62 95 95 GLY GLY B . n B 1 63 ALA 63 96 96 ALA ALA B . n B 1 64 ALA 64 97 97 ALA ALA B . n B 1 65 ILE 65 98 98 ILE ILE B . n B 1 66 ARG 66 99 99 ARG ARG B . n B 1 67 GLY 67 100 100 GLY GLY B . n B 1 68 ASP 68 101 101 ASP ALA B . n B 1 69 THR 69 102 102 THR ALA B . n B 1 70 PRO 70 103 103 PRO PRO B . n B 1 71 GLU 71 104 104 GLU ALA B . n B 1 72 VAL 72 105 105 VAL VAL B . n B 1 73 GLY 73 106 106 GLY GLY B . n B 1 74 VAL 74 107 107 VAL VAL B . n B 1 75 ALA 75 108 108 ALA ALA B . n B 1 76 THR 76 109 109 THR THR B . n B 1 77 ILE 77 110 110 ILE ILE B . n B 1 78 ASP 78 111 111 ASP ASP B . n B 1 79 MSE 79 112 112 MSE MSE B . n B 1 80 ASN 80 113 113 ASN ASN B . n B 1 81 THR 81 114 114 THR THR B . n B 1 82 SER 82 115 115 SER SER B . n B 1 83 PHE 83 116 116 PHE PHE B . n B 1 84 MSE 84 117 117 MSE MSE B . n B 1 85 SER 85 118 118 SER SER B . n B 1 86 PRO 86 119 119 PRO PRO B . n B 1 87 GLY 87 120 120 GLY GLY B . n B 1 88 ARG 88 121 121 ARG ARG B . n B 1 89 GLY 89 122 122 GLY GLY B . n B 1 90 ASP 90 123 123 ASP ASP B . n B 1 91 LEU 91 124 124 LEU LEU B . n B 1 92 VAL 92 125 125 VAL VAL B . n B 1 93 ILE 93 126 126 ILE ILE B . n B 1 94 GLU 94 127 127 GLU GLU B . n B 1 95 THR 95 128 128 THR THR B . n B 1 96 ARG 96 129 129 ARG ARG B . n B 1 97 CYS 97 130 130 CYS CYS B . n B 1 98 LEU 98 131 131 LEU LEU B . n B 1 99 ARG 99 132 132 ARG ARG B . n B 1 100 ARG 100 133 133 ARG ARG B . n B 1 101 GLY 101 134 134 GLY GLY B . n B 1 102 ALA 102 135 135 ALA ALA B . n B 1 103 SER 103 136 136 SER SER B . n B 1 104 ILE 104 137 137 ILE ILE B . n B 1 105 ALA 105 138 138 ALA ALA B . n B 1 106 PHE 106 139 139 PHE PHE B . n B 1 107 CYS 107 140 140 CYS CYS B . n B 1 108 GLU 108 141 141 GLU GLU B . n B 1 109 GLY 109 142 142 GLY GLY B . n B 1 110 GLU 110 143 143 GLU GLU B . n B 1 111 ILE 111 144 144 ILE ILE B . n B 1 112 ARG 112 145 145 ARG ARG B . n B 1 113 ASP 113 146 146 ASP ASP B . n B 1 114 SER 114 147 147 SER SER B . n B 1 115 ALA 115 148 148 ALA ALA B . n B 1 116 GLY 116 149 149 GLY GLY B . n B 1 117 GLU 117 150 150 GLU GLU B . n B 1 118 LEU 118 151 151 LEU LEU B . n B 1 119 VAL 119 152 152 VAL VAL B . n B 1 120 ALA 120 153 153 ALA ALA B . n B 1 121 LYS 121 154 154 LYS LYS B . n B 1 122 ALA 122 155 155 ALA ALA B . n B 1 123 THR 123 156 156 THR THR B . n B 1 124 ALA 124 157 157 ALA ALA B . n B 1 125 THR 125 158 158 THR THR B . n B 1 126 PHE 126 159 159 PHE PHE B . n B 1 127 LYS 127 160 160 LYS LYS B . n B 1 128 ILE 128 161 161 ILE ILE B . n B 1 129 ILE 129 162 162 ILE ILE B . n B 1 130 GLN 130 163 ? ? ? B . n B 1 131 ARG 131 164 ? ? ? B . n B 1 132 ARG 132 165 ? ? ? B . n B 1 133 PRO 133 166 ? ? ? B . n B 1 134 GLY 134 167 ? ? ? B . n B 1 135 LEU 135 168 ? ? ? B . n B 1 136 GLU 136 169 ? ? ? B . n B 1 137 HIS 137 170 ? ? ? B . n B 1 138 HIS 138 171 ? ? ? B . n B 1 139 HIS 139 172 ? ? ? B . n B 1 140 HIS 140 173 ? ? ? B . n B 1 141 HIS 141 174 ? ? ? B . n B 1 142 HIS 142 175 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 203 203 HOH WAT A . C 2 HOH 2 207 207 HOH WAT A . C 2 HOH 3 209 209 HOH WAT A . C 2 HOH 4 210 210 HOH WAT A . C 2 HOH 5 212 212 HOH WAT A . C 2 HOH 6 213 213 HOH WAT A . C 2 HOH 7 220 220 HOH WAT A . C 2 HOH 8 222 222 HOH WAT A . C 2 HOH 9 223 223 HOH WAT A . C 2 HOH 10 228 228 HOH WAT A . C 2 HOH 11 229 229 HOH WAT A . C 2 HOH 12 231 231 HOH WAT A . C 2 HOH 13 239 239 HOH WAT A . C 2 HOH 14 241 241 HOH WAT A . C 2 HOH 15 242 242 HOH WAT A . C 2 HOH 16 243 243 HOH WAT A . C 2 HOH 17 245 245 HOH WAT A . C 2 HOH 18 247 247 HOH WAT A . C 2 HOH 19 249 249 HOH WAT A . C 2 HOH 20 251 251 HOH WAT A . C 2 HOH 21 253 253 HOH WAT A . C 2 HOH 22 267 267 HOH WAT A . C 2 HOH 23 272 272 HOH WAT A . C 2 HOH 24 273 273 HOH WAT A . C 2 HOH 25 275 275 HOH WAT A . C 2 HOH 26 281 281 HOH WAT A . C 2 HOH 27 287 287 HOH WAT A . C 2 HOH 28 288 288 HOH WAT A . D 2 HOH 1 201 201 HOH WAT B . D 2 HOH 2 202 202 HOH WAT B . D 2 HOH 3 205 205 HOH WAT B . D 2 HOH 4 206 206 HOH WAT B . D 2 HOH 5 208 208 HOH WAT B . D 2 HOH 6 211 211 HOH WAT B . D 2 HOH 7 214 214 HOH WAT B . D 2 HOH 8 215 215 HOH WAT B . D 2 HOH 9 216 216 HOH WAT B . D 2 HOH 10 217 217 HOH WAT B . D 2 HOH 11 218 218 HOH WAT B . D 2 HOH 12 219 219 HOH WAT B . D 2 HOH 13 221 221 HOH WAT B . D 2 HOH 14 224 224 HOH WAT B . D 2 HOH 15 227 227 HOH WAT B . D 2 HOH 16 232 232 HOH WAT B . D 2 HOH 17 233 233 HOH WAT B . D 2 HOH 18 235 235 HOH WAT B . D 2 HOH 19 236 236 HOH WAT B . D 2 HOH 20 237 237 HOH WAT B . D 2 HOH 21 238 238 HOH WAT B . D 2 HOH 22 240 240 HOH WAT B . D 2 HOH 23 246 246 HOH WAT B . D 2 HOH 24 252 252 HOH WAT B . D 2 HOH 25 254 254 HOH WAT B . D 2 HOH 26 256 256 HOH WAT B . D 2 HOH 27 259 259 HOH WAT B . D 2 HOH 28 263 263 HOH WAT B . D 2 HOH 29 268 268 HOH WAT B . D 2 HOH 30 269 269 HOH WAT B . D 2 HOH 31 274 274 HOH WAT B . D 2 HOH 32 280 280 HOH WAT B . D 2 HOH 33 283 283 HOH WAT B . D 2 HOH 34 285 285 HOH WAT B . D 2 HOH 35 289 289 HOH WAT B . D 2 HOH 36 290 290 HOH WAT B . D 2 HOH 37 291 291 HOH WAT B . D 2 HOH 38 292 292 HOH WAT B . D 2 HOH 39 293 293 HOH WAT B . D 2 HOH 40 294 294 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 16 A MSE 49 ? MET SELENOMETHIONINE 2 A MSE 54 A MSE 87 ? MET SELENOMETHIONINE 3 A MSE 79 A MSE 112 ? MET SELENOMETHIONINE 4 A MSE 84 A MSE 117 ? MET SELENOMETHIONINE 5 B MSE 16 B MSE 49 ? MET SELENOMETHIONINE 6 B MSE 54 B MSE 87 ? MET SELENOMETHIONINE 7 B MSE 79 B MSE 112 ? MET SELENOMETHIONINE 8 B MSE 84 B MSE 117 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7460 ? 1 MORE -50 ? 1 'SSA (A^2)' 17940 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 107.7920000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SHELXDE phasing . ? 5 RESOLVE phasing . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 58 ? ? 179.95 155.50 2 1 SER A 59 ? ? -170.17 119.46 3 1 ASN A 76 ? ? -77.21 -162.39 4 1 THR A 102 ? ? -167.14 90.61 5 1 SER B 59 ? ? -177.76 132.41 6 1 ILE B 98 ? ? -98.00 -62.84 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 104 ? CG ? A GLU 71 CG 2 1 Y 1 A GLU 104 ? CD ? A GLU 71 CD 3 1 Y 1 A GLU 104 ? OE1 ? A GLU 71 OE1 4 1 Y 1 A GLU 104 ? OE2 ? A GLU 71 OE2 5 1 Y 1 A LYS 160 ? CG ? A LYS 127 CG 6 1 Y 1 A LYS 160 ? CD ? A LYS 127 CD 7 1 Y 1 A LYS 160 ? CE ? A LYS 127 CE 8 1 Y 1 A LYS 160 ? NZ ? A LYS 127 NZ 9 1 Y 1 B ASP 101 ? CG ? B ASP 68 CG 10 1 Y 1 B ASP 101 ? OD1 ? B ASP 68 OD1 11 1 Y 1 B ASP 101 ? OD2 ? B ASP 68 OD2 12 1 Y 1 B THR 102 ? OG1 ? B THR 69 OG1 13 1 Y 1 B THR 102 ? CG2 ? B THR 69 CG2 14 1 Y 1 B GLU 104 ? CG ? B GLU 71 CG 15 1 Y 1 B GLU 104 ? CD ? B GLU 71 CD 16 1 Y 1 B GLU 104 ? OE1 ? B GLU 71 OE1 17 1 Y 1 B GLU 104 ? OE2 ? B GLU 71 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 34 ? A MSE 1 2 1 Y 1 A SER 35 ? A SER 2 3 1 Y 1 A THR 36 ? A THR 3 4 1 Y 1 A PRO 37 ? A PRO 4 5 1 Y 1 A HIS 38 ? A HIS 5 6 1 Y 1 A ARG 164 ? A ARG 131 7 1 Y 1 A ARG 165 ? A ARG 132 8 1 Y 1 A PRO 166 ? A PRO 133 9 1 Y 1 A GLY 167 ? A GLY 134 10 1 Y 1 A LEU 168 ? A LEU 135 11 1 Y 1 A GLU 169 ? A GLU 136 12 1 Y 1 A HIS 170 ? A HIS 137 13 1 Y 1 A HIS 171 ? A HIS 138 14 1 Y 1 A HIS 172 ? A HIS 139 15 1 Y 1 A HIS 173 ? A HIS 140 16 1 Y 1 A HIS 174 ? A HIS 141 17 1 Y 1 A HIS 175 ? A HIS 142 18 1 Y 1 B MSE 34 ? B MSE 1 19 1 Y 1 B SER 35 ? B SER 2 20 1 Y 1 B THR 36 ? B THR 3 21 1 Y 1 B PRO 37 ? B PRO 4 22 1 Y 1 B HIS 38 ? B HIS 5 23 1 Y 1 B GLN 163 ? B GLN 130 24 1 Y 1 B ARG 164 ? B ARG 131 25 1 Y 1 B ARG 165 ? B ARG 132 26 1 Y 1 B PRO 166 ? B PRO 133 27 1 Y 1 B GLY 167 ? B GLY 134 28 1 Y 1 B LEU 168 ? B LEU 135 29 1 Y 1 B GLU 169 ? B GLU 136 30 1 Y 1 B HIS 170 ? B HIS 137 31 1 Y 1 B HIS 171 ? B HIS 138 32 1 Y 1 B HIS 172 ? B HIS 139 33 1 Y 1 B HIS 173 ? B HIS 140 34 1 Y 1 B HIS 174 ? B HIS 141 35 1 Y 1 B HIS 175 ? B HIS 142 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #