data_3DL1 # _entry.id 3DL1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DL1 pdb_00003dl1 10.2210/pdb3dl1/pdb RCSB RCSB048170 ? ? WWPDB D_1000048170 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 388889 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DL1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-26 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'The Structure of Mlc Titration Factor A (MtfA/YeeI) Reveals a Prototypical Zinc Metallopeptidase Related to Anthrax Lethal Factor.' _citation.journal_abbrev J.Bacteriol. _citation.journal_volume 194 _citation.page_first 2987 _citation.page_last 2999 _citation.year 2012 _citation.journal_id_ASTM JOBAAY _citation.country US _citation.journal_id_ISSN 0021-9193 _citation.journal_id_CSD 0767 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22467785 _citation.pdbx_database_id_DOI 10.1128/JB.00038-12 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, Q.' 1 ? primary 'Gohler, A.K.' 2 ? primary 'Kosfeld, A.' 3 ? primary 'Carlton, D.' 4 ? primary 'Chiu, H.J.' 5 ? primary 'Klock, H.E.' 6 ? primary 'Knuth, M.W.' 7 ? primary 'Miller, M.D.' 8 ? primary 'Elsliger, M.A.' 9 ? primary 'Deacon, A.M.' 10 ? primary 'Godzik, A.' 11 ? primary 'Lesley, S.A.' 12 ? primary 'Jahreis, K.' 13 ? primary 'Wilson, I.A.' 14 ? # _cell.entry_id 3DL1 _cell.length_a 131.050 _cell.length_b 131.050 _cell.length_c 37.150 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DL1 _symmetry.Int_Tables_number 92 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative Metal-dependent Hydrolase' 30673.625 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 water nat water 18.015 97 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Mlc titration factor A' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)(MSE)FKWPWKADDESGNAE(MSE)PWEQALAIPVLAHLSSTEQHKLTQ(MSE)AARFLQQKRLVALQGLELTP LHQARIA(MSE)LFCLPVLELGIEWLDGFHEVLIYPAPFIVDDEWEDDIGLVHNQRVVQSGQSWQQGPVVLNWLDIQDSF DASGFNLVVHEVAHKLDTRNGDRASGVPLIPLREVAGWEHDLHAA(MSE)NNIQDEIDLVGESAASIDAYAATDPAECFA VLSEYFFSAPELFAPRFPALWQRFCHFYRQDPLARRRENGLQDEGDRRIVH ; _entity_poly.pdbx_seq_one_letter_code_can ;GMMFKWPWKADDESGNAEMPWEQALAIPVLAHLSSTEQHKLTQMAARFLQQKRLVALQGLELTPLHQARIAMLFCLPVLE LGIEWLDGFHEVLIYPAPFIVDDEWEDDIGLVHNQRVVQSGQSWQQGPVVLNWLDIQDSFDASGFNLVVHEVAHKLDTRN GDRASGVPLIPLREVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRF CHFYRQDPLARRRENGLQDEGDRRIVH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 388889 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 MSE n 1 4 PHE n 1 5 LYS n 1 6 TRP n 1 7 PRO n 1 8 TRP n 1 9 LYS n 1 10 ALA n 1 11 ASP n 1 12 ASP n 1 13 GLU n 1 14 SER n 1 15 GLY n 1 16 ASN n 1 17 ALA n 1 18 GLU n 1 19 MSE n 1 20 PRO n 1 21 TRP n 1 22 GLU n 1 23 GLN n 1 24 ALA n 1 25 LEU n 1 26 ALA n 1 27 ILE n 1 28 PRO n 1 29 VAL n 1 30 LEU n 1 31 ALA n 1 32 HIS n 1 33 LEU n 1 34 SER n 1 35 SER n 1 36 THR n 1 37 GLU n 1 38 GLN n 1 39 HIS n 1 40 LYS n 1 41 LEU n 1 42 THR n 1 43 GLN n 1 44 MSE n 1 45 ALA n 1 46 ALA n 1 47 ARG n 1 48 PHE n 1 49 LEU n 1 50 GLN n 1 51 GLN n 1 52 LYS n 1 53 ARG n 1 54 LEU n 1 55 VAL n 1 56 ALA n 1 57 LEU n 1 58 GLN n 1 59 GLY n 1 60 LEU n 1 61 GLU n 1 62 LEU n 1 63 THR n 1 64 PRO n 1 65 LEU n 1 66 HIS n 1 67 GLN n 1 68 ALA n 1 69 ARG n 1 70 ILE n 1 71 ALA n 1 72 MSE n 1 73 LEU n 1 74 PHE n 1 75 CYS n 1 76 LEU n 1 77 PRO n 1 78 VAL n 1 79 LEU n 1 80 GLU n 1 81 LEU n 1 82 GLY n 1 83 ILE n 1 84 GLU n 1 85 TRP n 1 86 LEU n 1 87 ASP n 1 88 GLY n 1 89 PHE n 1 90 HIS n 1 91 GLU n 1 92 VAL n 1 93 LEU n 1 94 ILE n 1 95 TYR n 1 96 PRO n 1 97 ALA n 1 98 PRO n 1 99 PHE n 1 100 ILE n 1 101 VAL n 1 102 ASP n 1 103 ASP n 1 104 GLU n 1 105 TRP n 1 106 GLU n 1 107 ASP n 1 108 ASP n 1 109 ILE n 1 110 GLY n 1 111 LEU n 1 112 VAL n 1 113 HIS n 1 114 ASN n 1 115 GLN n 1 116 ARG n 1 117 VAL n 1 118 VAL n 1 119 GLN n 1 120 SER n 1 121 GLY n 1 122 GLN n 1 123 SER n 1 124 TRP n 1 125 GLN n 1 126 GLN n 1 127 GLY n 1 128 PRO n 1 129 VAL n 1 130 VAL n 1 131 LEU n 1 132 ASN n 1 133 TRP n 1 134 LEU n 1 135 ASP n 1 136 ILE n 1 137 GLN n 1 138 ASP n 1 139 SER n 1 140 PHE n 1 141 ASP n 1 142 ALA n 1 143 SER n 1 144 GLY n 1 145 PHE n 1 146 ASN n 1 147 LEU n 1 148 VAL n 1 149 VAL n 1 150 HIS n 1 151 GLU n 1 152 VAL n 1 153 ALA n 1 154 HIS n 1 155 LYS n 1 156 LEU n 1 157 ASP n 1 158 THR n 1 159 ARG n 1 160 ASN n 1 161 GLY n 1 162 ASP n 1 163 ARG n 1 164 ALA n 1 165 SER n 1 166 GLY n 1 167 VAL n 1 168 PRO n 1 169 LEU n 1 170 ILE n 1 171 PRO n 1 172 LEU n 1 173 ARG n 1 174 GLU n 1 175 VAL n 1 176 ALA n 1 177 GLY n 1 178 TRP n 1 179 GLU n 1 180 HIS n 1 181 ASP n 1 182 LEU n 1 183 HIS n 1 184 ALA n 1 185 ALA n 1 186 MSE n 1 187 ASN n 1 188 ASN n 1 189 ILE n 1 190 GLN n 1 191 ASP n 1 192 GLU n 1 193 ILE n 1 194 ASP n 1 195 LEU n 1 196 VAL n 1 197 GLY n 1 198 GLU n 1 199 SER n 1 200 ALA n 1 201 ALA n 1 202 SER n 1 203 ILE n 1 204 ASP n 1 205 ALA n 1 206 TYR n 1 207 ALA n 1 208 ALA n 1 209 THR n 1 210 ASP n 1 211 PRO n 1 212 ALA n 1 213 GLU n 1 214 CYS n 1 215 PHE n 1 216 ALA n 1 217 VAL n 1 218 LEU n 1 219 SER n 1 220 GLU n 1 221 TYR n 1 222 PHE n 1 223 PHE n 1 224 SER n 1 225 ALA n 1 226 PRO n 1 227 GLU n 1 228 LEU n 1 229 PHE n 1 230 ALA n 1 231 PRO n 1 232 ARG n 1 233 PHE n 1 234 PRO n 1 235 ALA n 1 236 LEU n 1 237 TRP n 1 238 GLN n 1 239 ARG n 1 240 PHE n 1 241 CYS n 1 242 HIS n 1 243 PHE n 1 244 TYR n 1 245 ARG n 1 246 GLN n 1 247 ASP n 1 248 PRO n 1 249 LEU n 1 250 ALA n 1 251 ARG n 1 252 ARG n 1 253 ARG n 1 254 GLU n 1 255 ASN n 1 256 GLY n 1 257 LEU n 1 258 GLN n 1 259 ASP n 1 260 GLU n 1 261 GLY n 1 262 ASP n 1 263 ARG n 1 264 ARG n 1 265 ILE n 1 266 VAL n 1 267 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'YP_001336084.1, mtfA, KPN78578_23930, KPN_02432' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Klebsiella pneumoniae subsp. pneumoniae MGH 78578' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272620 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MTFA_KLEP7 _struct_ref.pdbx_db_accession A6TB83 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFKWPWKADDESGNAEMPWEQALAIPVLAHLSSTEQHKLTQMAARFLQQKRLVALQGLELTPLHQARIAMLFCLPVLELG IEWLDGFHEVLIYPAPFIVDDEWEDDIGLVHNQRVVQSGQSWQQGPVVLNWLDIQDSFDASGFNLVVHEVAHKLDTRNGD RASGVPLIPLREVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFCH FYRQDPLARRRENGLQDEGDRRIVH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DL1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 267 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6TB83 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 266 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DL1 GLY A 1 ? UNP A6TB83 ? ? 'expression tag' 0 1 1 3DL1 MSE A 2 ? UNP A6TB83 ? ? 'SEE REMARK 999' 1 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DL1 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.60 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.0000M (NH4)2HPO4, 0.2000M NaCl, 0.1M Imidazole pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-06-16 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DL1 _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 29.311 _reflns.number_obs 17061 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_netI_over_sigmaI 5.900 _reflns.pdbx_Rsym_value 0.081 _reflns.pdbx_redundancy 7.100 _reflns.percent_possible_obs 99.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.20 2.26 ? 8841 ? 0.678 1.1 0.678 ? 7.30 ? 1212 100.00 1 1 2.26 2.32 ? 8965 ? 0.458 1.6 0.458 ? 7.30 ? 1230 100.00 2 1 2.32 2.39 ? 8345 ? 0.413 1.8 0.413 ? 7.20 ? 1152 100.00 3 1 2.39 2.46 ? 8366 ? 0.322 2.3 0.322 ? 7.40 ? 1133 100.00 4 1 2.46 2.54 ? 7954 ? 0.290 2.6 0.290 ? 7.20 ? 1104 100.00 5 1 2.54 2.63 ? 7921 ? 0.221 3.4 0.221 ? 7.30 ? 1079 100.00 6 1 2.63 2.73 ? 7439 ? 0.186 3.9 0.186 ? 7.20 ? 1035 100.00 7 1 2.73 2.84 ? 7428 ? 0.141 5.2 0.141 ? 7.30 ? 1014 100.00 8 1 2.84 2.97 ? 6802 ? 0.118 6.1 0.118 ? 7.20 ? 948 100.00 9 1 2.97 3.11 ? 6768 ? 0.097 7.2 0.097 ? 7.30 ? 931 100.00 10 1 3.11 3.28 ? 6192 ? 0.089 7.5 0.089 ? 7.20 ? 865 100.00 11 1 3.28 3.48 ? 5956 ? 0.078 8.3 0.078 ? 7.20 ? 833 100.00 12 1 3.48 3.72 ? 5699 ? 0.073 8.5 0.073 ? 7.10 ? 802 100.00 13 1 3.72 4.02 ? 5179 ? 0.071 8.5 0.071 ? 7.00 ? 740 100.00 14 1 4.02 4.40 ? 4783 ? 0.058 10.0 0.058 ? 7.00 ? 687 100.00 15 1 4.40 4.92 ? 4319 ? 0.053 11.3 0.053 ? 6.90 ? 622 100.00 16 1 4.92 5.68 ? 3855 ? 0.057 9.9 0.057 ? 6.80 ? 568 100.00 17 1 5.68 6.96 ? 3147 ? 0.064 9.5 0.064 ? 6.50 ? 482 100.00 18 1 6.96 9.84 ? 2503 ? 0.052 11.0 0.052 ? 6.30 ? 395 100.00 19 1 9.84 29.31 ? 1220 ? 0.047 13.3 0.047 ? 5.30 ? 229 95.20 20 1 # _refine.entry_id 3DL1 _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 29.311 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.740 _refine.ls_number_reflns_obs 16997 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. ; _refine.ls_R_factor_obs 0.172 _refine.ls_R_factor_R_work 0.171 _refine.ls_R_factor_R_free 0.202 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 861 _refine.B_iso_mean 37.533 _refine.aniso_B[1][1] 1.140 _refine.aniso_B[2][2] 1.140 _refine.aniso_B[3][3] -2.290 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.pdbx_overall_ESU_R 0.170 _refine.pdbx_overall_ESU_R_Free 0.150 _refine.overall_SU_ML 0.109 _refine.overall_SU_B 8.619 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1664 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1762 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 29.311 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1731 0.016 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1147 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2366 1.375 1.946 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2787 0.928 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 213 4.983 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 84 37.303 23.571 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 263 13.220 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 16.880 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 262 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1936 0.005 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 366 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 337 0.209 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1146 0.183 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 825 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 852 0.087 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 67 0.159 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 6 0.185 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 15 0.335 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 5 0.079 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1154 2.144 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 416 0.464 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1704 3.215 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 737 5.566 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 659 7.315 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.340 _refine_ls_shell.number_reflns_R_work 1144 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.241 _refine_ls_shell.R_factor_R_free 0.310 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1205 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DL1 _struct.title ;Crystal structure of a Putative Metal-dependent Hydrolase (YP_001336084.1) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 2.20 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_001336084.1, A Putative Metal-dependent Hydrolase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, Protein of unknown function (DUF980), unknown function, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3DL1 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? LEU A 25 ? PRO A 19 LEU A 24 1 ? 6 HELX_P HELX_P2 2 ILE A 27 ? ALA A 31 ? ILE A 26 ALA A 30 5 ? 5 HELX_P HELX_P3 3 SER A 34 ? LYS A 52 ? SER A 33 LYS A 51 1 ? 19 HELX_P HELX_P4 4 THR A 63 ? LEU A 76 ? THR A 62 LEU A 75 1 ? 14 HELX_P HELX_P5 5 PRO A 77 ? LEU A 79 ? PRO A 76 LEU A 78 5 ? 3 HELX_P HELX_P6 6 GLY A 82 ? ASP A 87 ? GLY A 81 ASP A 86 5 ? 6 HELX_P HELX_P7 7 TRP A 133 ? SER A 139 ? TRP A 132 SER A 138 1 ? 7 HELX_P HELX_P8 8 ASN A 146 ? ARG A 159 ? ASN A 145 ARG A 158 1 ? 14 HELX_P HELX_P9 9 PRO A 171 ? ARG A 173 ? PRO A 170 ARG A 172 5 ? 3 HELX_P HELX_P10 10 GLU A 174 ? GLY A 197 ? GLU A 173 GLY A 196 1 ? 24 HELX_P HELX_P11 11 ASP A 210 ? ALA A 225 ? ASP A 209 ALA A 224 1 ? 16 HELX_P HELX_P12 12 PRO A 226 ? PHE A 229 ? PRO A 225 PHE A 228 5 ? 4 HELX_P HELX_P13 13 PHE A 233 ? ARG A 245 ? PHE A 232 ARG A 244 1 ? 13 HELX_P HELX_P14 14 ASP A 247 ? GLU A 254 ? ASP A 246 GLU A 253 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLU 18 C ? ? ? 1_555 A MSE 19 N ? ? A GLU 17 A MSE 18 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A MSE 19 C ? ? ? 1_555 A PRO 20 N ? ? A MSE 18 A PRO 19 1_555 ? ? ? ? ? ? ? 1.348 ? ? covale3 covale both ? A GLN 43 C ? ? ? 1_555 A MSE 44 N ? ? A GLN 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? A MSE 44 C ? ? ? 1_555 A ALA 45 N ? ? A MSE 43 A ALA 44 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? A ALA 71 C ? ? ? 1_555 A MSE 72 N ? ? A ALA 70 A MSE 71 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? A MSE 72 C ? ? ? 1_555 A LEU 73 N ? ? A MSE 71 A LEU 72 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale7 covale both ? A ALA 185 C ? ? ? 1_555 A MSE 186 N ? ? A ALA 184 A MSE 185 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale8 covale both ? A MSE 186 C ? ? ? 1_555 A ASN 187 N ? ? A MSE 185 A ASN 186 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 53 ? ALA A 56 ? ARG A 52 ALA A 55 A 2 GLU A 91 ? TYR A 95 ? GLU A 90 TYR A 94 A 3 VAL A 129 ? ASN A 132 ? VAL A 128 ASN A 131 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 55 ? N VAL A 54 O VAL A 92 ? O VAL A 91 A 2 3 N LEU A 93 ? N LEU A 92 O VAL A 129 ? O VAL A 128 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id CL _struct_site.pdbx_auth_seq_id 267 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE CL A 267' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 PHE A 223 ? PHE A 222 . ? 1_555 ? 2 AC1 2 ARG A 252 ? ARG A 251 . ? 1_555 ? # _atom_sites.entry_id 3DL1 _atom_sites.fract_transf_matrix[1][1] 0.007631 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007631 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026918 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 MSE 2 1 ? ? ? A . n A 1 3 MSE 3 2 ? ? ? A . n A 1 4 PHE 4 3 ? ? ? A . n A 1 5 LYS 5 4 ? ? ? A . n A 1 6 TRP 6 5 ? ? ? A . n A 1 7 PRO 7 6 ? ? ? A . n A 1 8 TRP 8 7 ? ? ? A . n A 1 9 LYS 9 8 ? ? ? A . n A 1 10 ALA 10 9 ? ? ? A . n A 1 11 ASP 11 10 ? ? ? A . n A 1 12 ASP 12 11 ? ? ? A . n A 1 13 GLU 13 12 ? ? ? A . n A 1 14 SER 14 13 ? ? ? A . n A 1 15 GLY 15 14 ? ? ? A . n A 1 16 ASN 16 15 ? ? ? A . n A 1 17 ALA 17 16 ? ? ? A . n A 1 18 GLU 18 17 17 GLU GLU A . n A 1 19 MSE 19 18 18 MSE MSE A . n A 1 20 PRO 20 19 19 PRO PRO A . n A 1 21 TRP 21 20 20 TRP TRP A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ILE 27 26 26 ILE ILE A . n A 1 28 PRO 28 27 27 PRO PRO A . n A 1 29 VAL 29 28 28 VAL VAL A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 HIS 32 31 31 HIS HIS A . n A 1 33 LEU 33 32 32 LEU LEU A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 SER 35 34 34 SER SER A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 GLN 38 37 37 GLN GLN A . n A 1 39 HIS 39 38 38 HIS HIS A . n A 1 40 LYS 40 39 39 LYS LYS A . n A 1 41 LEU 41 40 40 LEU LEU A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 MSE 44 43 43 MSE MSE A . n A 1 45 ALA 45 44 44 ALA ALA A . n A 1 46 ALA 46 45 45 ALA ALA A . n A 1 47 ARG 47 46 46 ARG ARG A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 LEU 49 48 48 LEU LEU A . n A 1 50 GLN 50 49 49 GLN GLN A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 VAL 55 54 54 VAL VAL A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 GLN 58 57 57 GLN GLN A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 THR 63 62 62 THR THR A . n A 1 64 PRO 64 63 63 PRO PRO A . n A 1 65 LEU 65 64 64 LEU LEU A . n A 1 66 HIS 66 65 65 HIS HIS A . n A 1 67 GLN 67 66 66 GLN GLN A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 ILE 70 69 69 ILE ILE A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 MSE 72 71 71 MSE MSE A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 PHE 74 73 73 PHE PHE A . n A 1 75 CYS 75 74 74 CYS CYS A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 PRO 77 76 76 PRO PRO A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 GLY 82 81 81 GLY GLY A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 TRP 85 84 84 TRP TRP A . n A 1 86 LEU 86 85 85 LEU LEU A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 PHE 89 88 88 PHE PHE A . n A 1 90 HIS 90 89 89 HIS HIS A . n A 1 91 GLU 91 90 90 GLU GLU A . n A 1 92 VAL 92 91 91 VAL VAL A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 TYR 95 94 94 TYR TYR A . n A 1 96 PRO 96 95 95 PRO PRO A . n A 1 97 ALA 97 96 96 ALA ALA A . n A 1 98 PRO 98 97 97 PRO PRO A . n A 1 99 PHE 99 98 98 PHE PHE A . n A 1 100 ILE 100 99 ? ? ? A . n A 1 101 VAL 101 100 ? ? ? A . n A 1 102 ASP 102 101 ? ? ? A . n A 1 103 ASP 103 102 ? ? ? A . n A 1 104 GLU 104 103 ? ? ? A . n A 1 105 TRP 105 104 ? ? ? A . n A 1 106 GLU 106 105 ? ? ? A . n A 1 107 ASP 107 106 ? ? ? A . n A 1 108 ASP 108 107 ? ? ? A . n A 1 109 ILE 109 108 ? ? ? A . n A 1 110 GLY 110 109 ? ? ? A . n A 1 111 LEU 111 110 ? ? ? A . n A 1 112 VAL 112 111 ? ? ? A . n A 1 113 HIS 113 112 ? ? ? A . n A 1 114 ASN 114 113 ? ? ? A . n A 1 115 GLN 115 114 ? ? ? A . n A 1 116 ARG 116 115 ? ? ? A . n A 1 117 VAL 117 116 ? ? ? A . n A 1 118 VAL 118 117 ? ? ? A . n A 1 119 GLN 119 118 ? ? ? A . n A 1 120 SER 120 119 ? ? ? A . n A 1 121 GLY 121 120 ? ? ? A . n A 1 122 GLN 122 121 ? ? ? A . n A 1 123 SER 123 122 ? ? ? A . n A 1 124 TRP 124 123 ? ? ? A . n A 1 125 GLN 125 124 124 GLN GLN A . n A 1 126 GLN 126 125 125 GLN GLN A . n A 1 127 GLY 127 126 126 GLY GLY A . n A 1 128 PRO 128 127 127 PRO PRO A . n A 1 129 VAL 129 128 128 VAL VAL A . n A 1 130 VAL 130 129 129 VAL VAL A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 ASN 132 131 131 ASN ASN A . n A 1 133 TRP 133 132 132 TRP TRP A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 ASP 135 134 134 ASP ASP A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 GLN 137 136 136 GLN GLN A . n A 1 138 ASP 138 137 137 ASP ASP A . n A 1 139 SER 139 138 138 SER SER A . n A 1 140 PHE 140 139 139 PHE PHE A . n A 1 141 ASP 141 140 140 ASP ASP A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 SER 143 142 142 SER SER A . n A 1 144 GLY 144 143 143 GLY GLY A . n A 1 145 PHE 145 144 144 PHE PHE A . n A 1 146 ASN 146 145 145 ASN ASN A . n A 1 147 LEU 147 146 146 LEU LEU A . n A 1 148 VAL 148 147 147 VAL VAL A . n A 1 149 VAL 149 148 148 VAL VAL A . n A 1 150 HIS 150 149 149 HIS HIS A . n A 1 151 GLU 151 150 150 GLU GLU A . n A 1 152 VAL 152 151 151 VAL VAL A . n A 1 153 ALA 153 152 152 ALA ALA A . n A 1 154 HIS 154 153 153 HIS HIS A . n A 1 155 LYS 155 154 154 LYS LYS A . n A 1 156 LEU 156 155 155 LEU LEU A . n A 1 157 ASP 157 156 156 ASP ASP A . n A 1 158 THR 158 157 157 THR THR A . n A 1 159 ARG 159 158 158 ARG ARG A . n A 1 160 ASN 160 159 ? ? ? A . n A 1 161 GLY 161 160 ? ? ? A . n A 1 162 ASP 162 161 161 ASP ASP A . n A 1 163 ARG 163 162 162 ARG ARG A . n A 1 164 ALA 164 163 163 ALA ALA A . n A 1 165 SER 165 164 164 SER SER A . n A 1 166 GLY 166 165 165 GLY GLY A . n A 1 167 VAL 167 166 166 VAL VAL A . n A 1 168 PRO 168 167 167 PRO PRO A . n A 1 169 LEU 169 168 168 LEU LEU A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 PRO 171 170 170 PRO PRO A . n A 1 172 LEU 172 171 171 LEU LEU A . n A 1 173 ARG 173 172 172 ARG ARG A . n A 1 174 GLU 174 173 173 GLU GLU A . n A 1 175 VAL 175 174 174 VAL VAL A . n A 1 176 ALA 176 175 175 ALA ALA A . n A 1 177 GLY 177 176 176 GLY GLY A . n A 1 178 TRP 178 177 177 TRP TRP A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 HIS 180 179 179 HIS HIS A . n A 1 181 ASP 181 180 180 ASP ASP A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 HIS 183 182 182 HIS HIS A . n A 1 184 ALA 184 183 183 ALA ALA A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 MSE 186 185 185 MSE MSE A . n A 1 187 ASN 187 186 186 ASN ASN A . n A 1 188 ASN 188 187 187 ASN ASN A . n A 1 189 ILE 189 188 188 ILE ILE A . n A 1 190 GLN 190 189 189 GLN GLN A . n A 1 191 ASP 191 190 190 ASP ASP A . n A 1 192 GLU 192 191 191 GLU GLU A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 ASP 194 193 193 ASP ASP A . n A 1 195 LEU 195 194 194 LEU LEU A . n A 1 196 VAL 196 195 195 VAL VAL A . n A 1 197 GLY 197 196 196 GLY GLY A . n A 1 198 GLU 198 197 197 GLU GLU A . n A 1 199 SER 199 198 198 SER SER A . n A 1 200 ALA 200 199 199 ALA ALA A . n A 1 201 ALA 201 200 200 ALA ALA A . n A 1 202 SER 202 201 201 SER SER A . n A 1 203 ILE 203 202 202 ILE ILE A . n A 1 204 ASP 204 203 203 ASP ASP A . n A 1 205 ALA 205 204 204 ALA ALA A . n A 1 206 TYR 206 205 205 TYR TYR A . n A 1 207 ALA 207 206 206 ALA ALA A . n A 1 208 ALA 208 207 207 ALA ALA A . n A 1 209 THR 209 208 208 THR THR A . n A 1 210 ASP 210 209 209 ASP ASP A . n A 1 211 PRO 211 210 210 PRO PRO A . n A 1 212 ALA 212 211 211 ALA ALA A . n A 1 213 GLU 213 212 212 GLU GLU A . n A 1 214 CYS 214 213 213 CYS CYS A . n A 1 215 PHE 215 214 214 PHE PHE A . n A 1 216 ALA 216 215 215 ALA ALA A . n A 1 217 VAL 217 216 216 VAL VAL A . n A 1 218 LEU 218 217 217 LEU LEU A . n A 1 219 SER 219 218 218 SER SER A . n A 1 220 GLU 220 219 219 GLU GLU A . n A 1 221 TYR 221 220 220 TYR TYR A . n A 1 222 PHE 222 221 221 PHE PHE A . n A 1 223 PHE 223 222 222 PHE PHE A . n A 1 224 SER 224 223 223 SER SER A . n A 1 225 ALA 225 224 224 ALA ALA A . n A 1 226 PRO 226 225 225 PRO PRO A . n A 1 227 GLU 227 226 226 GLU GLU A . n A 1 228 LEU 228 227 227 LEU LEU A . n A 1 229 PHE 229 228 228 PHE PHE A . n A 1 230 ALA 230 229 229 ALA ALA A . n A 1 231 PRO 231 230 230 PRO PRO A . n A 1 232 ARG 232 231 231 ARG ARG A . n A 1 233 PHE 233 232 232 PHE PHE A . n A 1 234 PRO 234 233 233 PRO PRO A . n A 1 235 ALA 235 234 234 ALA ALA A . n A 1 236 LEU 236 235 235 LEU LEU A . n A 1 237 TRP 237 236 236 TRP TRP A . n A 1 238 GLN 238 237 237 GLN GLN A . n A 1 239 ARG 239 238 238 ARG ARG A . n A 1 240 PHE 240 239 239 PHE PHE A . n A 1 241 CYS 241 240 240 CYS CYS A . n A 1 242 HIS 242 241 241 HIS HIS A . n A 1 243 PHE 243 242 242 PHE PHE A . n A 1 244 TYR 244 243 243 TYR TYR A . n A 1 245 ARG 245 244 244 ARG ARG A . n A 1 246 GLN 246 245 245 GLN GLN A . n A 1 247 ASP 247 246 246 ASP ASP A . n A 1 248 PRO 248 247 247 PRO PRO A . n A 1 249 LEU 249 248 248 LEU LEU A . n A 1 250 ALA 250 249 249 ALA ALA A . n A 1 251 ARG 251 250 250 ARG ARG A . n A 1 252 ARG 252 251 251 ARG ARG A . n A 1 253 ARG 253 252 252 ARG ARG A . n A 1 254 GLU 254 253 253 GLU GLU A . n A 1 255 ASN 255 254 ? ? ? A . n A 1 256 GLY 256 255 ? ? ? A . n A 1 257 LEU 257 256 ? ? ? A . n A 1 258 GLN 258 257 ? ? ? A . n A 1 259 ASP 259 258 ? ? ? A . n A 1 260 GLU 260 259 ? ? ? A . n A 1 261 GLY 261 260 ? ? ? A . n A 1 262 ASP 262 261 ? ? ? A . n A 1 263 ARG 263 262 ? ? ? A . n A 1 264 ARG 264 263 ? ? ? A . n A 1 265 ILE 265 264 ? ? ? A . n A 1 266 VAL 266 265 ? ? ? A . n A 1 267 HIS 267 266 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 267 1 CL CL A . C 3 HOH 1 268 2 HOH HOH A . C 3 HOH 2 269 3 HOH HOH A . C 3 HOH 3 270 4 HOH HOH A . C 3 HOH 4 271 5 HOH HOH A . C 3 HOH 5 272 6 HOH HOH A . C 3 HOH 6 273 7 HOH HOH A . C 3 HOH 7 274 8 HOH HOH A . C 3 HOH 8 275 9 HOH HOH A . C 3 HOH 9 276 10 HOH HOH A . C 3 HOH 10 277 11 HOH HOH A . C 3 HOH 11 278 12 HOH HOH A . C 3 HOH 12 279 13 HOH HOH A . C 3 HOH 13 280 14 HOH HOH A . C 3 HOH 14 281 15 HOH HOH A . C 3 HOH 15 282 16 HOH HOH A . C 3 HOH 16 283 17 HOH HOH A . C 3 HOH 17 284 18 HOH HOH A . C 3 HOH 18 285 19 HOH HOH A . C 3 HOH 19 286 20 HOH HOH A . C 3 HOH 20 287 21 HOH HOH A . C 3 HOH 21 288 22 HOH HOH A . C 3 HOH 22 289 23 HOH HOH A . C 3 HOH 23 290 24 HOH HOH A . C 3 HOH 24 291 25 HOH HOH A . C 3 HOH 25 292 26 HOH HOH A . C 3 HOH 26 293 27 HOH HOH A . C 3 HOH 27 294 28 HOH HOH A . C 3 HOH 28 295 29 HOH HOH A . C 3 HOH 29 296 30 HOH HOH A . C 3 HOH 30 297 31 HOH HOH A . C 3 HOH 31 298 32 HOH HOH A . C 3 HOH 32 299 33 HOH HOH A . C 3 HOH 33 300 34 HOH HOH A . C 3 HOH 34 301 35 HOH HOH A . C 3 HOH 35 302 36 HOH HOH A . C 3 HOH 36 303 37 HOH HOH A . C 3 HOH 37 304 38 HOH HOH A . C 3 HOH 38 305 39 HOH HOH A . C 3 HOH 39 306 40 HOH HOH A . C 3 HOH 40 307 41 HOH HOH A . C 3 HOH 41 308 42 HOH HOH A . C 3 HOH 42 309 43 HOH HOH A . C 3 HOH 43 310 44 HOH HOH A . C 3 HOH 44 311 45 HOH HOH A . C 3 HOH 45 312 46 HOH HOH A . C 3 HOH 46 313 47 HOH HOH A . C 3 HOH 47 314 48 HOH HOH A . C 3 HOH 48 315 49 HOH HOH A . C 3 HOH 49 316 50 HOH HOH A . C 3 HOH 50 317 51 HOH HOH A . C 3 HOH 51 318 52 HOH HOH A . C 3 HOH 52 319 53 HOH HOH A . C 3 HOH 53 320 54 HOH HOH A . C 3 HOH 54 321 55 HOH HOH A . C 3 HOH 55 322 56 HOH HOH A . C 3 HOH 56 323 57 HOH HOH A . C 3 HOH 57 324 58 HOH HOH A . C 3 HOH 58 325 59 HOH HOH A . C 3 HOH 59 326 60 HOH HOH A . C 3 HOH 60 327 61 HOH HOH A . C 3 HOH 61 328 62 HOH HOH A . C 3 HOH 62 329 63 HOH HOH A . C 3 HOH 63 330 64 HOH HOH A . C 3 HOH 64 331 65 HOH HOH A . C 3 HOH 65 332 66 HOH HOH A . C 3 HOH 66 333 67 HOH HOH A . C 3 HOH 67 334 68 HOH HOH A . C 3 HOH 68 335 69 HOH HOH A . C 3 HOH 69 336 70 HOH HOH A . C 3 HOH 70 337 71 HOH HOH A . C 3 HOH 71 338 72 HOH HOH A . C 3 HOH 72 339 73 HOH HOH A . C 3 HOH 73 340 74 HOH HOH A . C 3 HOH 74 341 75 HOH HOH A . C 3 HOH 75 342 76 HOH HOH A . C 3 HOH 76 343 77 HOH HOH A . C 3 HOH 77 344 78 HOH HOH A . C 3 HOH 78 345 79 HOH HOH A . C 3 HOH 79 346 80 HOH HOH A . C 3 HOH 80 347 81 HOH HOH A . C 3 HOH 81 348 82 HOH HOH A . C 3 HOH 82 349 83 HOH HOH A . C 3 HOH 83 350 84 HOH HOH A . C 3 HOH 84 351 85 HOH HOH A . C 3 HOH 85 352 86 HOH HOH A . C 3 HOH 86 353 87 HOH HOH A . C 3 HOH 87 354 88 HOH HOH A . C 3 HOH 88 355 89 HOH HOH A . C 3 HOH 89 356 90 HOH HOH A . C 3 HOH 90 357 91 HOH HOH A . C 3 HOH 91 358 92 HOH HOH A . C 3 HOH 92 359 93 HOH HOH A . C 3 HOH 93 360 94 HOH HOH A . C 3 HOH 94 361 95 HOH HOH A . C 3 HOH 95 362 96 HOH HOH A . C 3 HOH 96 363 97 HOH HOH A . C 3 HOH 97 364 98 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 19 A MSE 18 ? MET SELENOMETHIONINE 2 A MSE 44 A MSE 43 ? MET SELENOMETHIONINE 3 A MSE 72 A MSE 71 ? MET SELENOMETHIONINE 4 A MSE 186 A MSE 185 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-05-23 4 'Structure model' 1 3 2017-10-25 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 5 'Structure model' struct_conn 4 6 'Structure model' database_2 5 6 'Structure model' struct_ref_seq_dif 6 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_software.classification' 4 5 'Structure model' '_software.contact_author' 5 5 'Structure model' '_software.contact_author_email' 6 5 'Structure model' '_software.language' 7 5 'Structure model' '_software.location' 8 5 'Structure model' '_software.name' 9 5 'Structure model' '_software.type' 10 5 'Structure model' '_software.version' 11 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 6 'Structure model' '_database_2.pdbx_DOI' 13 6 'Structure model' '_database_2.pdbx_database_accession' 14 6 'Structure model' '_struct_ref_seq_dif.details' 15 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 50.6167 _pdbx_refine_tls.origin_y 23.6789 _pdbx_refine_tls.origin_z 8.5781 _pdbx_refine_tls.T[1][1] -0.0905 _pdbx_refine_tls.T[2][2] -0.0374 _pdbx_refine_tls.T[3][3] -0.1160 _pdbx_refine_tls.T[1][2] 0.0668 _pdbx_refine_tls.T[1][3] 0.0467 _pdbx_refine_tls.T[2][3] 0.0732 _pdbx_refine_tls.L[1][1] 2.5490 _pdbx_refine_tls.L[2][2] 1.4419 _pdbx_refine_tls.L[3][3] 1.4342 _pdbx_refine_tls.L[1][2] 0.4932 _pdbx_refine_tls.L[1][3] 0.1559 _pdbx_refine_tls.L[2][3] 0.1114 _pdbx_refine_tls.S[1][1] 0.0746 _pdbx_refine_tls.S[2][2] -0.0556 _pdbx_refine_tls.S[3][3] -0.0189 _pdbx_refine_tls.S[1][2] -0.2828 _pdbx_refine_tls.S[1][3] -0.2943 _pdbx_refine_tls.S[2][3] -0.0929 _pdbx_refine_tls.S[2][1] -0.0665 _pdbx_refine_tls.S[3][1] 0.0447 _pdbx_refine_tls.S[3][2] 0.1371 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 18 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 254 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 17 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 253 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 SHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3DL1 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE TARGET PROTEIN SEQUENCE MATCHES TO GENBANK ENTRY YP_001336084.1.YP_001336084.1, COMPARED TO UNP MATCH A6TB83, HAS AN EXTRA RESIDEU MET AT THE BEGINNING OF THE SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 141 ? ? -104.04 59.76 2 1 PHE A 228 ? ? -120.64 -59.42 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 17 ? CG ? A GLU 18 CG 2 1 Y 1 A GLU 17 ? CD ? A GLU 18 CD 3 1 Y 1 A GLU 17 ? OE1 ? A GLU 18 OE1 4 1 Y 1 A GLU 17 ? OE2 ? A GLU 18 OE2 5 1 Y 1 A GLN 124 ? CG ? A GLN 125 CG 6 1 Y 1 A GLN 124 ? CD ? A GLN 125 CD 7 1 Y 1 A GLN 124 ? OE1 ? A GLN 125 OE1 8 1 Y 1 A GLN 124 ? NE2 ? A GLN 125 NE2 9 1 Y 1 A GLN 125 ? CG ? A GLN 126 CG 10 1 Y 1 A GLN 125 ? CD ? A GLN 126 CD 11 1 Y 1 A GLN 125 ? OE1 ? A GLN 126 OE1 12 1 Y 1 A GLN 125 ? NE2 ? A GLN 126 NE2 13 1 Y 1 A ASP 161 ? CG ? A ASP 162 CG 14 1 Y 1 A ASP 161 ? OD1 ? A ASP 162 OD1 15 1 Y 1 A ASP 161 ? OD2 ? A ASP 162 OD2 16 1 Y 1 A ARG 162 ? CG ? A ARG 163 CG 17 1 Y 1 A ARG 162 ? CD ? A ARG 163 CD 18 1 Y 1 A ARG 162 ? NE ? A ARG 163 NE 19 1 Y 1 A ARG 162 ? CZ ? A ARG 163 CZ 20 1 Y 1 A ARG 162 ? NH1 ? A ARG 163 NH1 21 1 Y 1 A ARG 162 ? NH2 ? A ARG 163 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A MSE 1 ? A MSE 2 3 1 Y 1 A MSE 2 ? A MSE 3 4 1 Y 1 A PHE 3 ? A PHE 4 5 1 Y 1 A LYS 4 ? A LYS 5 6 1 Y 1 A TRP 5 ? A TRP 6 7 1 Y 1 A PRO 6 ? A PRO 7 8 1 Y 1 A TRP 7 ? A TRP 8 9 1 Y 1 A LYS 8 ? A LYS 9 10 1 Y 1 A ALA 9 ? A ALA 10 11 1 Y 1 A ASP 10 ? A ASP 11 12 1 Y 1 A ASP 11 ? A ASP 12 13 1 Y 1 A GLU 12 ? A GLU 13 14 1 Y 1 A SER 13 ? A SER 14 15 1 Y 1 A GLY 14 ? A GLY 15 16 1 Y 1 A ASN 15 ? A ASN 16 17 1 Y 1 A ALA 16 ? A ALA 17 18 1 Y 1 A ILE 99 ? A ILE 100 19 1 Y 1 A VAL 100 ? A VAL 101 20 1 Y 1 A ASP 101 ? A ASP 102 21 1 Y 1 A ASP 102 ? A ASP 103 22 1 Y 1 A GLU 103 ? A GLU 104 23 1 Y 1 A TRP 104 ? A TRP 105 24 1 Y 1 A GLU 105 ? A GLU 106 25 1 Y 1 A ASP 106 ? A ASP 107 26 1 Y 1 A ASP 107 ? A ASP 108 27 1 Y 1 A ILE 108 ? A ILE 109 28 1 Y 1 A GLY 109 ? A GLY 110 29 1 Y 1 A LEU 110 ? A LEU 111 30 1 Y 1 A VAL 111 ? A VAL 112 31 1 Y 1 A HIS 112 ? A HIS 113 32 1 Y 1 A ASN 113 ? A ASN 114 33 1 Y 1 A GLN 114 ? A GLN 115 34 1 Y 1 A ARG 115 ? A ARG 116 35 1 Y 1 A VAL 116 ? A VAL 117 36 1 Y 1 A VAL 117 ? A VAL 118 37 1 Y 1 A GLN 118 ? A GLN 119 38 1 Y 1 A SER 119 ? A SER 120 39 1 Y 1 A GLY 120 ? A GLY 121 40 1 Y 1 A GLN 121 ? A GLN 122 41 1 Y 1 A SER 122 ? A SER 123 42 1 Y 1 A TRP 123 ? A TRP 124 43 1 Y 1 A ASN 159 ? A ASN 160 44 1 Y 1 A GLY 160 ? A GLY 161 45 1 Y 1 A ASN 254 ? A ASN 255 46 1 Y 1 A GLY 255 ? A GLY 256 47 1 Y 1 A LEU 256 ? A LEU 257 48 1 Y 1 A GLN 257 ? A GLN 258 49 1 Y 1 A ASP 258 ? A ASP 259 50 1 Y 1 A GLU 259 ? A GLU 260 51 1 Y 1 A GLY 260 ? A GLY 261 52 1 Y 1 A ASP 261 ? A ASP 262 53 1 Y 1 A ARG 262 ? A ARG 263 54 1 Y 1 A ARG 263 ? A ARG 264 55 1 Y 1 A ILE 264 ? A ILE 265 56 1 Y 1 A VAL 265 ? A VAL 266 57 1 Y 1 A HIS 266 ? A HIS 267 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #