HEADER HYDROLASE 26-JUN-08 3DL1 TITLE CRYSTAL STRUCTURE OF A PUTATIVE METAL-DEPENDENT HYDROLASE TITLE 2 (YP_001336084.1) FROM KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH TITLE 3 78578 AT 2.20 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METAL-DEPENDENT HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MLC TITRATION FACTOR A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE MGH SOURCE 3 78578; SOURCE 4 ORGANISM_TAXID: 272620; SOURCE 5 GENE: YP_001336084.1, MTFA, KPN78578_23930, KPN_02432; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_001336084.1, A PUTATIVE METAL-DEPENDENT HYDROLASE, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-2, PROTEIN OF UNKNOWN FUNCTION (DUF980), KEYWDS 4 UNKNOWN FUNCTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 01-FEB-23 3DL1 1 REMARK SEQADV REVDAT 6 24-JUL-19 3DL1 1 REMARK LINK REVDAT 5 25-OCT-17 3DL1 1 REMARK REVDAT 4 23-MAY-12 3DL1 1 JRNL REVDAT 3 13-JUL-11 3DL1 1 VERSN REVDAT 2 24-FEB-09 3DL1 1 VERSN REVDAT 1 26-AUG-08 3DL1 0 JRNL AUTH Q.XU,A.K.GOHLER,A.KOSFELD,D.CARLTON,H.J.CHIU,H.E.KLOCK, JRNL AUTH 2 M.W.KNUTH,M.D.MILLER,M.A.ELSLIGER,A.M.DEACON,A.GODZIK, JRNL AUTH 3 S.A.LESLEY,K.JAHREIS,I.A.WILSON JRNL TITL THE STRUCTURE OF MLC TITRATION FACTOR A (MTFA/YEEI) REVEALS JRNL TITL 2 A PROTOTYPICAL ZINC METALLOPEPTIDASE RELATED TO ANTHRAX JRNL TITL 3 LETHAL FACTOR. JRNL REF J.BACTERIOL. V. 194 2987 2012 JRNL REFN ISSN 0021-9193 JRNL PMID 22467785 JRNL DOI 10.1128/JB.00038-12 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 861 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1664 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.14000 REMARK 3 B22 (A**2) : 1.14000 REMARK 3 B33 (A**2) : -2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.619 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1731 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1147 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2366 ; 1.375 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2787 ; 0.928 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 4.983 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;37.303 ;23.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;13.220 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;16.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1936 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 366 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 337 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1146 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 825 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 852 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 67 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 15 ; 0.335 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.079 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 2.144 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 416 ; 0.464 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1704 ; 3.215 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 737 ; 5.566 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 659 ; 7.315 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6167 23.6789 8.5781 REMARK 3 T TENSOR REMARK 3 T11: -0.0905 T22: -0.0374 REMARK 3 T33: -0.1160 T12: 0.0668 REMARK 3 T13: 0.0467 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 2.5490 L22: 1.4419 REMARK 3 L33: 1.4342 L12: 0.4932 REMARK 3 L13: 0.1559 L23: 0.1114 REMARK 3 S TENSOR REMARK 3 S11: 0.0746 S12: -0.2828 S13: -0.2943 REMARK 3 S21: -0.0665 S22: -0.0556 S23: -0.0929 REMARK 3 S31: 0.0447 S32: 0.1371 S33: -0.0189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 3DL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.311 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67800 REMARK 200 R SYM FOR SHELL (I) : 0.67800 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M (NH4)2HPO4, 0.2000M NACL, 0.1M REMARK 280 IMIDAZOLE PH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.57500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 65.52500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 65.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 9.28750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 65.52500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 65.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.86250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 65.52500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.52500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 9.28750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 65.52500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.52500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.86250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.57500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 MSE A 2 REMARK 465 PHE A 3 REMARK 465 LYS A 4 REMARK 465 TRP A 5 REMARK 465 PRO A 6 REMARK 465 TRP A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 11 REMARK 465 GLU A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 ASN A 15 REMARK 465 ALA A 16 REMARK 465 ILE A 99 REMARK 465 VAL A 100 REMARK 465 ASP A 101 REMARK 465 ASP A 102 REMARK 465 GLU A 103 REMARK 465 TRP A 104 REMARK 465 GLU A 105 REMARK 465 ASP A 106 REMARK 465 ASP A 107 REMARK 465 ILE A 108 REMARK 465 GLY A 109 REMARK 465 LEU A 110 REMARK 465 VAL A 111 REMARK 465 HIS A 112 REMARK 465 ASN A 113 REMARK 465 GLN A 114 REMARK 465 ARG A 115 REMARK 465 VAL A 116 REMARK 465 VAL A 117 REMARK 465 GLN A 118 REMARK 465 SER A 119 REMARK 465 GLY A 120 REMARK 465 GLN A 121 REMARK 465 SER A 122 REMARK 465 TRP A 123 REMARK 465 ASN A 159 REMARK 465 GLY A 160 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 LEU A 256 REMARK 465 GLN A 257 REMARK 465 ASP A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 ASP A 261 REMARK 465 ARG A 262 REMARK 465 ARG A 263 REMARK 465 ILE A 264 REMARK 465 VAL A 265 REMARK 465 HIS A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 GLN A 125 CG CD OE1 NE2 REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 141 59.76 -104.04 REMARK 500 PHE A 228 -59.42 -120.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 267 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 388889 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE TARGET REMARK 999 PROTEIN SEQUENCE MATCHES TO GENBANK ENTRY YP_001336084.1.YP_ REMARK 999 001336084.1, COMPARED TO UNP MATCH A6TB83, HAS AN EXTRA RESIDEU MET REMARK 999 AT THE BEGINNING OF THE SEQUENCE. DBREF 3DL1 A 2 266 UNP A6TB83 MTFA_KLEP7 1 265 SEQADV 3DL1 GLY A 0 UNP A6TB83 EXPRESSION TAG SEQADV 3DL1 MSE A 1 UNP A6TB83 SEE REMARK 999 SEQRES 1 A 267 GLY MSE MSE PHE LYS TRP PRO TRP LYS ALA ASP ASP GLU SEQRES 2 A 267 SER GLY ASN ALA GLU MSE PRO TRP GLU GLN ALA LEU ALA SEQRES 3 A 267 ILE PRO VAL LEU ALA HIS LEU SER SER THR GLU GLN HIS SEQRES 4 A 267 LYS LEU THR GLN MSE ALA ALA ARG PHE LEU GLN GLN LYS SEQRES 5 A 267 ARG LEU VAL ALA LEU GLN GLY LEU GLU LEU THR PRO LEU SEQRES 6 A 267 HIS GLN ALA ARG ILE ALA MSE LEU PHE CYS LEU PRO VAL SEQRES 7 A 267 LEU GLU LEU GLY ILE GLU TRP LEU ASP GLY PHE HIS GLU SEQRES 8 A 267 VAL LEU ILE TYR PRO ALA PRO PHE ILE VAL ASP ASP GLU SEQRES 9 A 267 TRP GLU ASP ASP ILE GLY LEU VAL HIS ASN GLN ARG VAL SEQRES 10 A 267 VAL GLN SER GLY GLN SER TRP GLN GLN GLY PRO VAL VAL SEQRES 11 A 267 LEU ASN TRP LEU ASP ILE GLN ASP SER PHE ASP ALA SER SEQRES 12 A 267 GLY PHE ASN LEU VAL VAL HIS GLU VAL ALA HIS LYS LEU SEQRES 13 A 267 ASP THR ARG ASN GLY ASP ARG ALA SER GLY VAL PRO LEU SEQRES 14 A 267 ILE PRO LEU ARG GLU VAL ALA GLY TRP GLU HIS ASP LEU SEQRES 15 A 267 HIS ALA ALA MSE ASN ASN ILE GLN ASP GLU ILE ASP LEU SEQRES 16 A 267 VAL GLY GLU SER ALA ALA SER ILE ASP ALA TYR ALA ALA SEQRES 17 A 267 THR ASP PRO ALA GLU CYS PHE ALA VAL LEU SER GLU TYR SEQRES 18 A 267 PHE PHE SER ALA PRO GLU LEU PHE ALA PRO ARG PHE PRO SEQRES 19 A 267 ALA LEU TRP GLN ARG PHE CYS HIS PHE TYR ARG GLN ASP SEQRES 20 A 267 PRO LEU ALA ARG ARG ARG GLU ASN GLY LEU GLN ASP GLU SEQRES 21 A 267 GLY ASP ARG ARG ILE VAL HIS MODRES 3DL1 MSE A 18 MET SELENOMETHIONINE MODRES 3DL1 MSE A 43 MET SELENOMETHIONINE MODRES 3DL1 MSE A 71 MET SELENOMETHIONINE MODRES 3DL1 MSE A 185 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 43 8 HET MSE A 71 8 HET MSE A 185 8 HET CL A 267 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 HOH *97(H2 O) HELIX 1 1 PRO A 19 LEU A 24 1 6 HELIX 2 2 ILE A 26 ALA A 30 5 5 HELIX 3 3 SER A 33 LYS A 51 1 19 HELIX 4 4 THR A 62 LEU A 75 1 14 HELIX 5 5 PRO A 76 LEU A 78 5 3 HELIX 6 6 GLY A 81 ASP A 86 5 6 HELIX 7 7 TRP A 132 SER A 138 1 7 HELIX 8 8 ASN A 145 ARG A 158 1 14 HELIX 9 9 PRO A 170 ARG A 172 5 3 HELIX 10 10 GLU A 173 GLY A 196 1 24 HELIX 11 11 ASP A 209 ALA A 224 1 16 HELIX 12 12 PRO A 225 PHE A 228 5 4 HELIX 13 13 PHE A 232 ARG A 244 1 13 HELIX 14 14 ASP A 246 GLU A 253 1 8 SHEET 1 A 3 ARG A 52 ALA A 55 0 SHEET 2 A 3 GLU A 90 TYR A 94 1 O VAL A 91 N VAL A 54 SHEET 3 A 3 VAL A 128 ASN A 131 1 O VAL A 128 N LEU A 92 LINK C GLU A 17 N MSE A 18 1555 1555 1.34 LINK C MSE A 18 N PRO A 19 1555 1555 1.35 LINK C GLN A 42 N MSE A 43 1555 1555 1.32 LINK C MSE A 43 N ALA A 44 1555 1555 1.34 LINK C ALA A 70 N MSE A 71 1555 1555 1.32 LINK C MSE A 71 N LEU A 72 1555 1555 1.33 LINK C ALA A 184 N MSE A 185 1555 1555 1.34 LINK C MSE A 185 N ASN A 186 1555 1555 1.33 SITE 1 AC1 2 PHE A 222 ARG A 251 CRYST1 131.050 131.050 37.150 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007631 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026918 0.00000