data_3DLC # _entry.id 3DLC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DLC pdb_00003dlc 10.2210/pdb3dlc/pdb RCSB RCSB048181 ? ? WWPDB D_1000048181 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 387106 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3DLC _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-27 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of a Putative S-adenosyl-L-methionine-dependent Methyltransferase (NP_988299.1) from Methanococcus maripaludis JJ (DSM 2067) at 1.15 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3DLC _cell.length_a 39.610 _cell.length_b 63.500 _cell.length_c 75.440 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DLC _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative S-adenosyl-L-methionine-dependent Methyltransferase' 24757.426 1 ? 'N45T, D89N, T127A, V194I, E202G' ? ? 2 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 3 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 5 water nat water 18.015 328 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)SENKKKFDKKGAKN(MSE)DEISKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRAL DFSKH(MSE)NEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG GFGNKELRDSISAE(MSE)IRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTDQEVI ; _entity_poly.pdbx_seq_one_letter_code_can ;GMSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNE IALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSIS AEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTDQEVI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 387106 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 SER n 1 4 GLU n 1 5 ASN n 1 6 LYS n 1 7 LYS n 1 8 LYS n 1 9 PHE n 1 10 ASP n 1 11 LYS n 1 12 LYS n 1 13 GLY n 1 14 ALA n 1 15 LYS n 1 16 ASN n 1 17 MSE n 1 18 ASP n 1 19 GLU n 1 20 ILE n 1 21 SER n 1 22 LYS n 1 23 THR n 1 24 LEU n 1 25 PHE n 1 26 ALA n 1 27 PRO n 1 28 ILE n 1 29 TYR n 1 30 PRO n 1 31 ILE n 1 32 ILE n 1 33 ALA n 1 34 GLU n 1 35 ASN n 1 36 ILE n 1 37 ILE n 1 38 ASN n 1 39 ARG n 1 40 PHE n 1 41 GLY n 1 42 ILE n 1 43 THR n 1 44 ALA n 1 45 GLY n 1 46 THR n 1 47 CYS n 1 48 ILE n 1 49 ASP n 1 50 ILE n 1 51 GLY n 1 52 SER n 1 53 GLY n 1 54 PRO n 1 55 GLY n 1 56 ALA n 1 57 LEU n 1 58 SER n 1 59 ILE n 1 60 ALA n 1 61 LEU n 1 62 ALA n 1 63 LYS n 1 64 GLN n 1 65 SER n 1 66 ASP n 1 67 PHE n 1 68 SER n 1 69 ILE n 1 70 ARG n 1 71 ALA n 1 72 LEU n 1 73 ASP n 1 74 PHE n 1 75 SER n 1 76 LYS n 1 77 HIS n 1 78 MSE n 1 79 ASN n 1 80 GLU n 1 81 ILE n 1 82 ALA n 1 83 LEU n 1 84 LYS n 1 85 ASN n 1 86 ILE n 1 87 ALA n 1 88 ASP n 1 89 ALA n 1 90 ASN n 1 91 LEU n 1 92 ASN n 1 93 ASP n 1 94 ARG n 1 95 ILE n 1 96 GLN n 1 97 ILE n 1 98 VAL n 1 99 GLN n 1 100 GLY n 1 101 ASP n 1 102 VAL n 1 103 HIS n 1 104 ASN n 1 105 ILE n 1 106 PRO n 1 107 ILE n 1 108 GLU n 1 109 ASP n 1 110 ASN n 1 111 TYR n 1 112 ALA n 1 113 ASP n 1 114 LEU n 1 115 ILE n 1 116 VAL n 1 117 SER n 1 118 ARG n 1 119 GLY n 1 120 SER n 1 121 VAL n 1 122 PHE n 1 123 PHE n 1 124 TRP n 1 125 GLU n 1 126 ASP n 1 127 VAL n 1 128 ALA n 1 129 THR n 1 130 ALA n 1 131 PHE n 1 132 ARG n 1 133 GLU n 1 134 ILE n 1 135 TYR n 1 136 ARG n 1 137 ILE n 1 138 LEU n 1 139 LYS n 1 140 SER n 1 141 GLY n 1 142 GLY n 1 143 LYS n 1 144 THR n 1 145 TYR n 1 146 ILE n 1 147 GLY n 1 148 GLY n 1 149 GLY n 1 150 PHE n 1 151 GLY n 1 152 ASN n 1 153 LYS n 1 154 GLU n 1 155 LEU n 1 156 ARG n 1 157 ASP n 1 158 SER n 1 159 ILE n 1 160 SER n 1 161 ALA n 1 162 GLU n 1 163 MSE n 1 164 ILE n 1 165 ARG n 1 166 LYS n 1 167 ASN n 1 168 PRO n 1 169 ASP n 1 170 TRP n 1 171 LYS n 1 172 GLU n 1 173 PHE n 1 174 ASN n 1 175 ARG n 1 176 LYS n 1 177 ASN n 1 178 ILE n 1 179 SER n 1 180 GLN n 1 181 GLU n 1 182 ASN n 1 183 VAL n 1 184 GLU n 1 185 ARG n 1 186 PHE n 1 187 GLN n 1 188 ASN n 1 189 VAL n 1 190 LEU n 1 191 ASP n 1 192 GLU n 1 193 ILE n 1 194 GLY n 1 195 ILE n 1 196 SER n 1 197 SER n 1 198 TYR n 1 199 GLU n 1 200 ILE n 1 201 ILE n 1 202 LEU n 1 203 GLY n 1 204 ASP n 1 205 GLU n 1 206 GLY n 1 207 PHE n 1 208 TRP n 1 209 ILE n 1 210 ILE n 1 211 ILE n 1 212 SER n 1 213 LYS n 1 214 THR n 1 215 ASP n 1 216 GLN n 1 217 GLU n 1 218 VAL n 1 219 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name Archaea _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NP_988299.1, MMP1179' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'JJ [DSM 2067]' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanococcus maripaludis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 39152 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 43000 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6LY14_METMP _struct_ref.pdbx_db_accession Q6LY14 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGNCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEI ALKNIADADLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVTTAFREIYRILKSGGKTYIGGGFGNKELRDSISA EMIRKNPDWKEFNRKNISQENVERFQNVLDEIGVSSYEIILEDEGFWIIISKTDQEVI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DLC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 219 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6LY14 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 218 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 218 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DLC GLY A 1 ? UNP Q6LY14 ? ? 'expression tag' 0 1 1 3DLC THR A 46 ? UNP Q6LY14 ASN 45 'SEE REMARK 999' 45 2 1 3DLC ASN A 90 ? UNP Q6LY14 ASP 89 'SEE REMARK 999' 89 3 1 3DLC ALA A 128 ? UNP Q6LY14 THR 127 'SEE REMARK 999' 127 4 1 3DLC ILE A 195 ? UNP Q6LY14 VAL 194 'SEE REMARK 999' 194 5 1 3DLC GLY A 203 ? UNP Q6LY14 GLU 202 'SEE REMARK 999' 202 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3DLC # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.92 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 35.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;0.17M ammonium acetate, 15.0% Glycerol, 25.5% polyethylene glycol 4000, 0.1M sodium acetate pH 4.6, Additive - 1mM S-adenosylmethionine, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2008-06-15 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97947 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97947 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3DLC _reflns.d_resolution_high 1.15 _reflns.d_resolution_low 29.260 _reflns.number_obs 68022 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_netI_over_sigmaI 11.430 _reflns.percent_possible_obs 98.000 _reflns.B_iso_Wilson_estimate 7.892 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.15 1.19 21233 ? 11988 0.378 2.3 ? ? ? ? ? 94.20 1 1 1.19 1.24 24047 ? 13355 0.323 2.7 ? ? ? ? ? 97.20 2 1 1.24 1.30 24546 ? 13447 0.275 3.2 ? ? ? ? ? 97.80 3 1 1.30 1.36 20933 ? 11314 0.217 4.0 ? ? ? ? ? 98.50 4 1 1.36 1.45 25355 ? 13606 0.167 5.1 ? ? ? ? ? 98.80 5 1 1.45 1.56 23864 ? 12743 0.110 7.4 ? ? ? ? ? 98.80 6 1 1.56 1.72 24887 ? 13143 0.074 10.3 ? ? ? ? ? 99.00 7 1 1.72 1.97 24434 ? 12903 0.046 15.0 ? ? ? ? ? 98.70 8 1 1.97 2.48 35406 ? 12884 0.038 24.2 ? ? ? ? ? 99.30 9 1 2.48 ? 49418 ? 12763 0.025 39.8 ? ? ? ? ? 97.80 10 1 # _refine.entry_id 3DLC _refine.ls_d_res_high 1.150 _refine.ls_d_res_low 29.260 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 99.460 _refine.ls_number_reflns_obs 67971 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. S-ADENOSYLMETHIONINE (SAM), ACETATE (ACT) AND GLYCEROL (GOL) MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. ; _refine.ls_R_factor_obs 0.121 _refine.ls_R_factor_R_work 0.120 _refine.ls_R_factor_R_free 0.138 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 3439 _refine.B_iso_mean 9.085 _refine.aniso_B[1][1] 0.620 _refine.aniso_B[2][2] 0.160 _refine.aniso_B[3][3] -0.770 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.982 _refine.correlation_coeff_Fo_to_Fc_free 0.979 _refine.pdbx_overall_ESU_R 0.032 _refine.pdbx_overall_ESU_R_Free 0.031 _refine.overall_SU_ML 0.020 _refine.overall_SU_B 0.958 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1722 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 328 _refine_hist.number_atoms_total 2093 _refine_hist.d_res_high 1.150 _refine_hist.d_res_low 29.260 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 2033 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1435 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2786 1.723 1.978 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3547 1.342 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 285 4.988 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 101 35.038 24.950 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 394 11.665 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14 17.480 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 305 0.114 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2326 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 412 0.004 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1208 1.776 2.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 492 0.856 2.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1985 2.575 4.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 825 3.919 6.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 769 5.120 8.000 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3468 2.217 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_free 338 7.559 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3404 3.369 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.150 _refine_ls_shell.d_res_low 1.180 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.250 _refine_ls_shell.number_reflns_R_work 4598 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.178 _refine_ls_shell.R_factor_R_free 0.175 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 245 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4843 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DLC _struct.title ;Crystal structure of a putative s-adenosyl-l-methionine-dependent methyltransferase (mmp1179) from methanococcus maripaludis at 1.15 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, transferase' _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.entry_id 3DLC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details 'AUTHORS STATE THAT CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? THR A 23 ? ASP A 9 THR A 22 1 ? 14 HELX_P HELX_P2 2 PRO A 27 ? GLY A 41 ? PRO A 26 GLY A 40 1 ? 15 HELX_P HELX_P3 3 GLY A 55 ? SER A 65 ? GLY A 54 SER A 64 1 ? 11 HELX_P HELX_P4 4 SER A 75 ? ALA A 89 ? SER A 74 ALA A 88 1 ? 15 HELX_P HELX_P5 5 SER A 120 ? TRP A 124 ? SER A 119 TRP A 123 5 ? 5 HELX_P HELX_P6 6 ASP A 126 ? ILE A 137 ? ASP A 125 ILE A 136 1 ? 12 HELX_P HELX_P7 7 ASN A 152 ? ASN A 167 ? ASN A 151 ASN A 166 1 ? 16 HELX_P HELX_P8 8 ASP A 169 ? ILE A 178 ? ASP A 168 ILE A 177 1 ? 10 HELX_P HELX_P9 9 SER A 179 ? GLY A 194 ? SER A 178 GLY A 193 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A SER 3 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.304 ? ? covale3 covale both ? A ASN 16 C ? ? ? 1_555 A MSE 17 N ? ? A ASN 15 A MSE 16 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? A MSE 17 C ? ? ? 1_555 A ASP 18 N ? ? A MSE 16 A ASP 17 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A HIS 77 C ? ? ? 1_555 A MSE 78 N ? ? A HIS 76 A MSE 77 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale6 covale both ? A MSE 78 C ? ? ? 1_555 A ASN 79 N ? ? A MSE 77 A ASN 78 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale7 covale both ? A GLU 162 C ? ? ? 1_555 A MSE 163 N ? ? A GLU 161 A MSE 162 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MSE 163 C ? ? ? 1_555 A ILE 164 N ? ? A MSE 162 A ILE 163 1_555 ? ? ? ? ? ? ? 1.321 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 95 ? GLN A 99 ? ILE A 94 GLN A 98 A 2 ASP A 66 ? ASP A 73 ? ASP A 65 ASP A 72 A 3 ALA A 44 ? ILE A 50 ? ALA A 43 ILE A 49 A 4 ALA A 112 ? ARG A 118 ? ALA A 111 ARG A 117 A 5 LEU A 138 ? GLY A 148 ? LEU A 137 GLY A 147 A 6 GLY A 206 ? ILE A 211 ? GLY A 205 ILE A 210 A 7 TYR A 198 ? GLY A 203 ? TYR A 197 GLY A 202 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 98 ? O VAL A 97 N ALA A 71 ? N ALA A 70 A 2 3 O SER A 68 ? O SER A 67 N GLY A 45 ? N GLY A 44 A 3 4 N ILE A 48 ? N ILE A 47 O VAL A 116 ? O VAL A 115 A 4 5 N SER A 117 ? N SER A 116 O GLY A 147 ? O GLY A 146 A 5 6 N ILE A 146 ? N ILE A 145 O ILE A 209 ? O ILE A 208 A 6 7 O ILE A 210 ? O ILE A 209 N GLU A 199 ? N GLU A 198 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 219 ? 3 'BINDING SITE FOR RESIDUE ACT A 219' AC2 Software A SAM 220 ? 19 'BINDING SITE FOR RESIDUE SAM A 220' AC3 Software A GOL 221 ? 9 'BINDING SITE FOR RESIDUE GOL A 221' AC4 Software A GOL 222 ? 8 'BINDING SITE FOR RESIDUE GOL A 222' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ARG A 185 ? ARG A 184 . ? 1_555 ? 2 AC1 3 HOH F . ? HOH A 275 . ? 1_555 ? 3 AC1 3 HOH F . ? HOH A 289 . ? 1_555 ? 4 AC2 19 PHE A 9 ? PHE A 8 . ? 1_555 ? 5 AC2 19 TYR A 29 ? TYR A 28 . ? 1_555 ? 6 AC2 19 GLY A 51 ? GLY A 50 . ? 1_555 ? 7 AC2 19 SER A 52 ? SER A 51 . ? 1_555 ? 8 AC2 19 GLY A 53 ? GLY A 52 . ? 1_555 ? 9 AC2 19 ASP A 73 ? ASP A 72 . ? 1_555 ? 10 AC2 19 PHE A 74 ? PHE A 73 . ? 1_555 ? 11 AC2 19 SER A 75 ? SER A 74 . ? 1_555 ? 12 AC2 19 GLY A 100 ? GLY A 99 . ? 1_555 ? 13 AC2 19 ASP A 101 ? ASP A 100 . ? 1_555 ? 14 AC2 19 ARG A 118 ? ARG A 117 . ? 1_555 ? 15 AC2 19 GLY A 119 ? GLY A 118 . ? 1_555 ? 16 AC2 19 SER A 120 ? SER A 119 . ? 1_555 ? 17 AC2 19 TRP A 124 ? TRP A 123 . ? 1_555 ? 18 AC2 19 GLU A 217 ? GLU A 216 . ? 2_555 ? 19 AC2 19 ILE A 219 ? ILE A 218 . ? 2_555 ? 20 AC2 19 HOH F . ? HOH A 239 . ? 1_555 ? 21 AC2 19 HOH F . ? HOH A 268 . ? 1_555 ? 22 AC2 19 HOH F . ? HOH A 297 . ? 1_555 ? 23 AC3 9 ILE A 20 ? ILE A 19 . ? 1_555 ? 24 AC3 9 LYS A 166 ? LYS A 165 . ? 1_555 ? 25 AC3 9 ASN A 167 ? ASN A 166 . ? 1_555 ? 26 AC3 9 ILE A 193 ? ILE A 192 . ? 2_555 ? 27 AC3 9 GLY A 194 ? GLY A 193 . ? 2_555 ? 28 AC3 9 GLN A 216 ? GLN A 215 . ? 2_555 ? 29 AC3 9 HOH F . ? HOH A 228 . ? 2_555 ? 30 AC3 9 HOH F . ? HOH A 354 . ? 2_555 ? 31 AC3 9 HOH F . ? HOH A 357 . ? 1_555 ? 32 AC4 8 PHE A 9 ? PHE A 8 . ? 1_555 ? 33 AC4 8 PRO A 30 ? PRO A 29 . ? 3_545 ? 34 AC4 8 PHE A 74 ? PHE A 73 . ? 1_555 ? 35 AC4 8 SER A 75 ? SER A 74 . ? 1_555 ? 36 AC4 8 HOH F . ? HOH A 321 . ? 1_555 ? 37 AC4 8 HOH F . ? HOH A 375 . ? 1_555 ? 38 AC4 8 HOH F . ? HOH A 470 . ? 3_545 ? 39 AC4 8 HOH F . ? HOH A 489 . ? 1_555 ? # _atom_sites.entry_id 3DLC _atom_sites.fract_transf_matrix[1][1] 0.025246 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015748 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013256 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 SER 3 2 2 SER SER A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 LYS 7 6 6 LYS LYS A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 PHE 9 8 8 PHE PHE A . n A 1 10 ASP 10 9 9 ASP ASP A . n A 1 11 LYS 11 10 10 LYS LYS A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 GLY 13 12 12 GLY GLY A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 LYS 15 14 14 LYS LYS A . n A 1 16 ASN 16 15 15 ASN ASN A . n A 1 17 MSE 17 16 16 MSE MSE A . n A 1 18 ASP 18 17 17 ASP ASP A . n A 1 19 GLU 19 18 18 GLU GLU A . n A 1 20 ILE 20 19 19 ILE ILE A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 LYS 22 21 21 LYS LYS A . n A 1 23 THR 23 22 22 THR THR A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 PHE 25 24 24 PHE PHE A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 PRO 27 26 26 PRO PRO A . n A 1 28 ILE 28 27 27 ILE ILE A . n A 1 29 TYR 29 28 28 TYR TYR A . n A 1 30 PRO 30 29 29 PRO PRO A . n A 1 31 ILE 31 30 30 ILE ILE A . n A 1 32 ILE 32 31 31 ILE ILE A . n A 1 33 ALA 33 32 32 ALA ALA A . n A 1 34 GLU 34 33 33 GLU GLU A . n A 1 35 ASN 35 34 34 ASN ASN A . n A 1 36 ILE 36 35 35 ILE ILE A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 ASN 38 37 37 ASN ASN A . n A 1 39 ARG 39 38 38 ARG ARG A . n A 1 40 PHE 40 39 39 PHE PHE A . n A 1 41 GLY 41 40 40 GLY GLY A . n A 1 42 ILE 42 41 41 ILE ILE A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 THR 46 45 45 THR THR A . n A 1 47 CYS 47 46 46 CYS CYS A . n A 1 48 ILE 48 47 47 ILE ILE A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 ILE 50 49 49 ILE ILE A . n A 1 51 GLY 51 50 50 GLY GLY A . n A 1 52 SER 52 51 51 SER SER A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 GLY 55 54 54 GLY GLY A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 SER 58 57 57 SER SER A . n A 1 59 ILE 59 58 58 ILE ILE A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 ALA 62 61 61 ALA ALA A . n A 1 63 LYS 63 62 62 LYS LYS A . n A 1 64 GLN 64 63 63 GLN GLN A . n A 1 65 SER 65 64 64 SER SER A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 PHE 67 66 66 PHE PHE A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 ARG 70 69 69 ARG ARG A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 ASP 73 72 72 ASP ASP A . n A 1 74 PHE 74 73 73 PHE PHE A . n A 1 75 SER 75 74 74 SER SER A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 HIS 77 76 76 HIS HIS A . n A 1 78 MSE 78 77 77 MSE MSE A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 ILE 81 80 80 ILE ILE A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 ASN 85 84 84 ASN ASN A . n A 1 86 ILE 86 85 85 ILE ILE A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 ASP 88 87 87 ASP ASP A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 ASN 90 89 89 ASN ASN A . n A 1 91 LEU 91 90 90 LEU LEU A . n A 1 92 ASN 92 91 91 ASN ASN A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 ARG 94 93 93 ARG ARG A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 GLN 96 95 95 GLN GLN A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 VAL 98 97 97 VAL VAL A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 GLY 100 99 99 GLY GLY A . n A 1 101 ASP 101 100 100 ASP ASP A . n A 1 102 VAL 102 101 101 VAL VAL A . n A 1 103 HIS 103 102 102 HIS HIS A . n A 1 104 ASN 104 103 103 ASN ASN A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 PRO 106 105 105 PRO PRO A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 TYR 111 110 110 TYR TYR A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 ASP 113 112 112 ASP ASP A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 ILE 115 114 114 ILE ILE A . n A 1 116 VAL 116 115 115 VAL VAL A . n A 1 117 SER 117 116 116 SER SER A . n A 1 118 ARG 118 117 117 ARG ARG A . n A 1 119 GLY 119 118 118 GLY GLY A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 VAL 121 120 120 VAL VAL A . n A 1 122 PHE 122 121 121 PHE PHE A . n A 1 123 PHE 123 122 122 PHE PHE A . n A 1 124 TRP 124 123 123 TRP TRP A . n A 1 125 GLU 125 124 124 GLU GLU A . n A 1 126 ASP 126 125 125 ASP ASP A . n A 1 127 VAL 127 126 126 VAL VAL A . n A 1 128 ALA 128 127 127 ALA ALA A . n A 1 129 THR 129 128 128 THR THR A . n A 1 130 ALA 130 129 129 ALA ALA A . n A 1 131 PHE 131 130 130 PHE PHE A . n A 1 132 ARG 132 131 131 ARG ARG A . n A 1 133 GLU 133 132 132 GLU GLU A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 ILE 137 136 136 ILE ILE A . n A 1 138 LEU 138 137 137 LEU LEU A . n A 1 139 LYS 139 138 138 LYS LYS A . n A 1 140 SER 140 139 139 SER SER A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 GLY 142 141 141 GLY GLY A . n A 1 143 LYS 143 142 142 LYS LYS A . n A 1 144 THR 144 143 143 THR THR A . n A 1 145 TYR 145 144 144 TYR TYR A . n A 1 146 ILE 146 145 145 ILE ILE A . n A 1 147 GLY 147 146 146 GLY GLY A . n A 1 148 GLY 148 147 147 GLY GLY A . n A 1 149 GLY 149 148 148 GLY GLY A . n A 1 150 PHE 150 149 149 PHE PHE A . n A 1 151 GLY 151 150 150 GLY GLY A . n A 1 152 ASN 152 151 151 ASN ASN A . n A 1 153 LYS 153 152 152 LYS LYS A . n A 1 154 GLU 154 153 153 GLU GLU A . n A 1 155 LEU 155 154 154 LEU LEU A . n A 1 156 ARG 156 155 155 ARG ARG A . n A 1 157 ASP 157 156 156 ASP ASP A . n A 1 158 SER 158 157 157 SER SER A . n A 1 159 ILE 159 158 158 ILE ILE A . n A 1 160 SER 160 159 159 SER SER A . n A 1 161 ALA 161 160 160 ALA ALA A . n A 1 162 GLU 162 161 161 GLU GLU A . n A 1 163 MSE 163 162 162 MSE MSE A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 LYS 166 165 165 LYS LYS A . n A 1 167 ASN 167 166 166 ASN ASN A . n A 1 168 PRO 168 167 167 PRO PRO A . n A 1 169 ASP 169 168 168 ASP ASP A . n A 1 170 TRP 170 169 169 TRP TRP A . n A 1 171 LYS 171 170 170 LYS LYS A . n A 1 172 GLU 172 171 171 GLU GLU A . n A 1 173 PHE 173 172 172 PHE PHE A . n A 1 174 ASN 174 173 173 ASN ASN A . n A 1 175 ARG 175 174 174 ARG ARG A . n A 1 176 LYS 176 175 175 LYS LYS A . n A 1 177 ASN 177 176 176 ASN ASN A . n A 1 178 ILE 178 177 177 ILE ILE A . n A 1 179 SER 179 178 178 SER SER A . n A 1 180 GLN 180 179 179 GLN GLN A . n A 1 181 GLU 181 180 180 GLU GLU A . n A 1 182 ASN 182 181 181 ASN ASN A . n A 1 183 VAL 183 182 182 VAL VAL A . n A 1 184 GLU 184 183 183 GLU GLU A . n A 1 185 ARG 185 184 184 ARG ARG A . n A 1 186 PHE 186 185 185 PHE PHE A . n A 1 187 GLN 187 186 186 GLN GLN A . n A 1 188 ASN 188 187 187 ASN ASN A . n A 1 189 VAL 189 188 188 VAL VAL A . n A 1 190 LEU 190 189 189 LEU LEU A . n A 1 191 ASP 191 190 190 ASP ASP A . n A 1 192 GLU 192 191 191 GLU GLU A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 GLY 194 193 193 GLY GLY A . n A 1 195 ILE 195 194 194 ILE ILE A . n A 1 196 SER 196 195 195 SER SER A . n A 1 197 SER 197 196 196 SER SER A . n A 1 198 TYR 198 197 197 TYR TYR A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 ILE 200 199 199 ILE ILE A . n A 1 201 ILE 201 200 200 ILE ILE A . n A 1 202 LEU 202 201 201 LEU LEU A . n A 1 203 GLY 203 202 202 GLY GLY A . n A 1 204 ASP 204 203 203 ASP ASP A . n A 1 205 GLU 205 204 204 GLU GLU A . n A 1 206 GLY 206 205 205 GLY GLY A . n A 1 207 PHE 207 206 206 PHE PHE A . n A 1 208 TRP 208 207 207 TRP TRP A . n A 1 209 ILE 209 208 208 ILE ILE A . n A 1 210 ILE 210 209 209 ILE ILE A . n A 1 211 ILE 211 210 210 ILE ILE A . n A 1 212 SER 212 211 211 SER SER A . n A 1 213 LYS 213 212 212 LYS LYS A . n A 1 214 THR 214 213 213 THR THR A . n A 1 215 ASP 215 214 214 ASP ASP A . n A 1 216 GLN 216 215 215 GLN GLN A . n A 1 217 GLU 217 216 216 GLU GLU A . n A 1 218 VAL 218 217 217 VAL VAL A . n A 1 219 ILE 219 218 218 ILE ILE A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 219 4 ACT ACT A . C 3 SAM 1 220 1 SAM SAM A . D 4 GOL 1 221 2 GOL GOL A . E 4 GOL 1 222 3 GOL GOL A . F 5 HOH 1 223 5 HOH HOH A . F 5 HOH 2 224 6 HOH HOH A . F 5 HOH 3 225 7 HOH HOH A . F 5 HOH 4 226 8 HOH HOH A . F 5 HOH 5 227 9 HOH HOH A . F 5 HOH 6 228 10 HOH HOH A . F 5 HOH 7 229 11 HOH HOH A . F 5 HOH 8 230 12 HOH HOH A . F 5 HOH 9 231 13 HOH HOH A . F 5 HOH 10 232 14 HOH HOH A . F 5 HOH 11 233 15 HOH HOH A . F 5 HOH 12 234 16 HOH HOH A . F 5 HOH 13 235 17 HOH HOH A . F 5 HOH 14 236 18 HOH HOH A . F 5 HOH 15 237 19 HOH HOH A . F 5 HOH 16 238 20 HOH HOH A . F 5 HOH 17 239 21 HOH HOH A . F 5 HOH 18 240 22 HOH HOH A . F 5 HOH 19 241 23 HOH HOH A . F 5 HOH 20 242 24 HOH HOH A . F 5 HOH 21 243 25 HOH HOH A . F 5 HOH 22 244 26 HOH HOH A . F 5 HOH 23 245 27 HOH HOH A . F 5 HOH 24 246 28 HOH HOH A . F 5 HOH 25 247 29 HOH HOH A . F 5 HOH 26 248 30 HOH HOH A . F 5 HOH 27 249 31 HOH HOH A . F 5 HOH 28 250 32 HOH HOH A . F 5 HOH 29 251 33 HOH HOH A . F 5 HOH 30 252 34 HOH HOH A . F 5 HOH 31 253 35 HOH HOH A . F 5 HOH 32 254 36 HOH HOH A . F 5 HOH 33 255 37 HOH HOH A . F 5 HOH 34 256 38 HOH HOH A . F 5 HOH 35 257 39 HOH HOH A . F 5 HOH 36 258 40 HOH HOH A . F 5 HOH 37 259 41 HOH HOH A . F 5 HOH 38 260 42 HOH HOH A . F 5 HOH 39 261 43 HOH HOH A . F 5 HOH 40 262 44 HOH HOH A . F 5 HOH 41 263 45 HOH HOH A . F 5 HOH 42 264 46 HOH HOH A . F 5 HOH 43 265 47 HOH HOH A . F 5 HOH 44 266 48 HOH HOH A . F 5 HOH 45 267 49 HOH HOH A . F 5 HOH 46 268 50 HOH HOH A . F 5 HOH 47 269 51 HOH HOH A . F 5 HOH 48 270 52 HOH HOH A . F 5 HOH 49 271 53 HOH HOH A . F 5 HOH 50 272 54 HOH HOH A . F 5 HOH 51 273 55 HOH HOH A . F 5 HOH 52 274 56 HOH HOH A . F 5 HOH 53 275 57 HOH HOH A . F 5 HOH 54 276 58 HOH HOH A . F 5 HOH 55 277 59 HOH HOH A . F 5 HOH 56 278 60 HOH HOH A . F 5 HOH 57 279 61 HOH HOH A . F 5 HOH 58 280 62 HOH HOH A . F 5 HOH 59 281 63 HOH HOH A . F 5 HOH 60 282 64 HOH HOH A . F 5 HOH 61 283 65 HOH HOH A . F 5 HOH 62 284 66 HOH HOH A . F 5 HOH 63 285 67 HOH HOH A . F 5 HOH 64 286 68 HOH HOH A . F 5 HOH 65 287 69 HOH HOH A . F 5 HOH 66 288 70 HOH HOH A . F 5 HOH 67 289 71 HOH HOH A . F 5 HOH 68 290 72 HOH HOH A . F 5 HOH 69 291 73 HOH HOH A . F 5 HOH 70 292 74 HOH HOH A . F 5 HOH 71 293 75 HOH HOH A . F 5 HOH 72 294 76 HOH HOH A . F 5 HOH 73 295 77 HOH HOH A . F 5 HOH 74 296 78 HOH HOH A . F 5 HOH 75 297 79 HOH HOH A . F 5 HOH 76 298 80 HOH HOH A . F 5 HOH 77 299 81 HOH HOH A . F 5 HOH 78 300 82 HOH HOH A . F 5 HOH 79 301 83 HOH HOH A . F 5 HOH 80 302 84 HOH HOH A . F 5 HOH 81 303 85 HOH HOH A . F 5 HOH 82 304 86 HOH HOH A . F 5 HOH 83 305 87 HOH HOH A . F 5 HOH 84 306 88 HOH HOH A . F 5 HOH 85 307 89 HOH HOH A . F 5 HOH 86 308 90 HOH HOH A . F 5 HOH 87 309 91 HOH HOH A . F 5 HOH 88 310 92 HOH HOH A . F 5 HOH 89 311 93 HOH HOH A . F 5 HOH 90 312 94 HOH HOH A . F 5 HOH 91 313 95 HOH HOH A . F 5 HOH 92 314 96 HOH HOH A . F 5 HOH 93 315 97 HOH HOH A . F 5 HOH 94 316 98 HOH HOH A . F 5 HOH 95 317 99 HOH HOH A . F 5 HOH 96 318 100 HOH HOH A . F 5 HOH 97 319 101 HOH HOH A . F 5 HOH 98 320 102 HOH HOH A . F 5 HOH 99 321 103 HOH HOH A . F 5 HOH 100 322 104 HOH HOH A . F 5 HOH 101 323 105 HOH HOH A . F 5 HOH 102 324 106 HOH HOH A . F 5 HOH 103 325 107 HOH HOH A . F 5 HOH 104 326 108 HOH HOH A . F 5 HOH 105 327 109 HOH HOH A . F 5 HOH 106 328 110 HOH HOH A . F 5 HOH 107 329 111 HOH HOH A . F 5 HOH 108 330 112 HOH HOH A . F 5 HOH 109 331 113 HOH HOH A . F 5 HOH 110 332 114 HOH HOH A . F 5 HOH 111 333 115 HOH HOH A . F 5 HOH 112 334 116 HOH HOH A . F 5 HOH 113 335 117 HOH HOH A . F 5 HOH 114 336 118 HOH HOH A . F 5 HOH 115 337 119 HOH HOH A . F 5 HOH 116 338 120 HOH HOH A . F 5 HOH 117 339 121 HOH HOH A . F 5 HOH 118 340 122 HOH HOH A . F 5 HOH 119 341 123 HOH HOH A . F 5 HOH 120 342 124 HOH HOH A . F 5 HOH 121 343 125 HOH HOH A . F 5 HOH 122 344 126 HOH HOH A . F 5 HOH 123 345 127 HOH HOH A . F 5 HOH 124 346 128 HOH HOH A . F 5 HOH 125 347 129 HOH HOH A . F 5 HOH 126 348 130 HOH HOH A . F 5 HOH 127 349 131 HOH HOH A . F 5 HOH 128 350 132 HOH HOH A . F 5 HOH 129 351 133 HOH HOH A . F 5 HOH 130 352 134 HOH HOH A . F 5 HOH 131 353 135 HOH HOH A . F 5 HOH 132 354 136 HOH HOH A . F 5 HOH 133 355 137 HOH HOH A . F 5 HOH 134 356 138 HOH HOH A . F 5 HOH 135 357 139 HOH HOH A . F 5 HOH 136 358 140 HOH HOH A . F 5 HOH 137 359 141 HOH HOH A . F 5 HOH 138 360 142 HOH HOH A . F 5 HOH 139 361 143 HOH HOH A . F 5 HOH 140 362 144 HOH HOH A . F 5 HOH 141 363 145 HOH HOH A . F 5 HOH 142 364 146 HOH HOH A . F 5 HOH 143 365 147 HOH HOH A . F 5 HOH 144 366 148 HOH HOH A . F 5 HOH 145 367 149 HOH HOH A . F 5 HOH 146 368 150 HOH HOH A . F 5 HOH 147 369 151 HOH HOH A . F 5 HOH 148 370 152 HOH HOH A . F 5 HOH 149 371 153 HOH HOH A . F 5 HOH 150 372 154 HOH HOH A . F 5 HOH 151 373 155 HOH HOH A . F 5 HOH 152 374 156 HOH HOH A . F 5 HOH 153 375 157 HOH HOH A . F 5 HOH 154 376 158 HOH HOH A . F 5 HOH 155 377 159 HOH HOH A . F 5 HOH 156 378 160 HOH HOH A . F 5 HOH 157 379 161 HOH HOH A . F 5 HOH 158 380 162 HOH HOH A . F 5 HOH 159 381 163 HOH HOH A . F 5 HOH 160 382 164 HOH HOH A . F 5 HOH 161 383 165 HOH HOH A . F 5 HOH 162 384 166 HOH HOH A . F 5 HOH 163 385 167 HOH HOH A . F 5 HOH 164 386 168 HOH HOH A . F 5 HOH 165 387 169 HOH HOH A . F 5 HOH 166 388 170 HOH HOH A . F 5 HOH 167 389 171 HOH HOH A . F 5 HOH 168 390 172 HOH HOH A . F 5 HOH 169 391 173 HOH HOH A . F 5 HOH 170 392 174 HOH HOH A . F 5 HOH 171 393 175 HOH HOH A . F 5 HOH 172 394 176 HOH HOH A . F 5 HOH 173 395 177 HOH HOH A . F 5 HOH 174 396 178 HOH HOH A . F 5 HOH 175 397 179 HOH HOH A . F 5 HOH 176 398 180 HOH HOH A . F 5 HOH 177 399 181 HOH HOH A . F 5 HOH 178 400 182 HOH HOH A . F 5 HOH 179 401 183 HOH HOH A . F 5 HOH 180 402 184 HOH HOH A . F 5 HOH 181 403 185 HOH HOH A . F 5 HOH 182 404 186 HOH HOH A . F 5 HOH 183 405 187 HOH HOH A . F 5 HOH 184 406 188 HOH HOH A . F 5 HOH 185 407 189 HOH HOH A . F 5 HOH 186 408 190 HOH HOH A . F 5 HOH 187 409 191 HOH HOH A . F 5 HOH 188 410 192 HOH HOH A . F 5 HOH 189 411 193 HOH HOH A . F 5 HOH 190 412 194 HOH HOH A . F 5 HOH 191 413 195 HOH HOH A . F 5 HOH 192 414 196 HOH HOH A . F 5 HOH 193 415 197 HOH HOH A . F 5 HOH 194 416 198 HOH HOH A . F 5 HOH 195 417 199 HOH HOH A . F 5 HOH 196 418 200 HOH HOH A . F 5 HOH 197 419 201 HOH HOH A . F 5 HOH 198 420 202 HOH HOH A . F 5 HOH 199 421 203 HOH HOH A . F 5 HOH 200 422 204 HOH HOH A . F 5 HOH 201 423 205 HOH HOH A . F 5 HOH 202 424 206 HOH HOH A . F 5 HOH 203 425 207 HOH HOH A . F 5 HOH 204 426 208 HOH HOH A . F 5 HOH 205 427 209 HOH HOH A . F 5 HOH 206 428 210 HOH HOH A . F 5 HOH 207 429 211 HOH HOH A . F 5 HOH 208 430 212 HOH HOH A . F 5 HOH 209 431 213 HOH HOH A . F 5 HOH 210 432 214 HOH HOH A . F 5 HOH 211 433 215 HOH HOH A . F 5 HOH 212 434 216 HOH HOH A . F 5 HOH 213 435 217 HOH HOH A . F 5 HOH 214 436 218 HOH HOH A . F 5 HOH 215 437 219 HOH HOH A . F 5 HOH 216 438 220 HOH HOH A . F 5 HOH 217 439 221 HOH HOH A . F 5 HOH 218 440 222 HOH HOH A . F 5 HOH 219 441 223 HOH HOH A . F 5 HOH 220 442 224 HOH HOH A . F 5 HOH 221 443 225 HOH HOH A . F 5 HOH 222 444 226 HOH HOH A . F 5 HOH 223 445 227 HOH HOH A . F 5 HOH 224 446 228 HOH HOH A . F 5 HOH 225 447 229 HOH HOH A . F 5 HOH 226 448 230 HOH HOH A . F 5 HOH 227 449 231 HOH HOH A . F 5 HOH 228 450 232 HOH HOH A . F 5 HOH 229 451 233 HOH HOH A . F 5 HOH 230 452 234 HOH HOH A . F 5 HOH 231 453 235 HOH HOH A . F 5 HOH 232 454 236 HOH HOH A . F 5 HOH 233 455 237 HOH HOH A . F 5 HOH 234 456 238 HOH HOH A . F 5 HOH 235 457 239 HOH HOH A . F 5 HOH 236 458 240 HOH HOH A . F 5 HOH 237 459 241 HOH HOH A . F 5 HOH 238 460 242 HOH HOH A . F 5 HOH 239 461 243 HOH HOH A . F 5 HOH 240 462 244 HOH HOH A . F 5 HOH 241 463 245 HOH HOH A . F 5 HOH 242 464 246 HOH HOH A . F 5 HOH 243 465 247 HOH HOH A . F 5 HOH 244 466 248 HOH HOH A . F 5 HOH 245 467 249 HOH HOH A . F 5 HOH 246 468 250 HOH HOH A . F 5 HOH 247 469 251 HOH HOH A . F 5 HOH 248 470 252 HOH HOH A . F 5 HOH 249 471 253 HOH HOH A . F 5 HOH 250 472 254 HOH HOH A . F 5 HOH 251 473 255 HOH HOH A . F 5 HOH 252 474 256 HOH HOH A . F 5 HOH 253 475 257 HOH HOH A . F 5 HOH 254 476 258 HOH HOH A . F 5 HOH 255 477 259 HOH HOH A . F 5 HOH 256 478 260 HOH HOH A . F 5 HOH 257 479 261 HOH HOH A . F 5 HOH 258 480 262 HOH HOH A . F 5 HOH 259 481 263 HOH HOH A . F 5 HOH 260 482 264 HOH HOH A . F 5 HOH 261 483 265 HOH HOH A . F 5 HOH 262 484 266 HOH HOH A . F 5 HOH 263 485 267 HOH HOH A . F 5 HOH 264 486 268 HOH HOH A . F 5 HOH 265 487 269 HOH HOH A . F 5 HOH 266 488 270 HOH HOH A . F 5 HOH 267 489 271 HOH HOH A . F 5 HOH 268 490 272 HOH HOH A . F 5 HOH 269 491 273 HOH HOH A . F 5 HOH 270 492 274 HOH HOH A . F 5 HOH 271 493 275 HOH HOH A . F 5 HOH 272 494 276 HOH HOH A . F 5 HOH 273 495 277 HOH HOH A . F 5 HOH 274 496 278 HOH HOH A . F 5 HOH 275 497 279 HOH HOH A . F 5 HOH 276 498 280 HOH HOH A . F 5 HOH 277 499 281 HOH HOH A . F 5 HOH 278 500 282 HOH HOH A . F 5 HOH 279 501 283 HOH HOH A . F 5 HOH 280 502 284 HOH HOH A . F 5 HOH 281 503 285 HOH HOH A . F 5 HOH 282 504 286 HOH HOH A . F 5 HOH 283 505 287 HOH HOH A . F 5 HOH 284 506 288 HOH HOH A . F 5 HOH 285 507 289 HOH HOH A . F 5 HOH 286 508 290 HOH HOH A . F 5 HOH 287 509 291 HOH HOH A . F 5 HOH 288 510 292 HOH HOH A . F 5 HOH 289 511 293 HOH HOH A . F 5 HOH 290 512 294 HOH HOH A . F 5 HOH 291 513 295 HOH HOH A . F 5 HOH 292 514 296 HOH HOH A . F 5 HOH 293 515 297 HOH HOH A . F 5 HOH 294 516 298 HOH HOH A . F 5 HOH 295 517 299 HOH HOH A . F 5 HOH 296 518 300 HOH HOH A . F 5 HOH 297 519 301 HOH HOH A . F 5 HOH 298 520 302 HOH HOH A . F 5 HOH 299 521 303 HOH HOH A . F 5 HOH 300 522 304 HOH HOH A . F 5 HOH 301 523 305 HOH HOH A . F 5 HOH 302 524 306 HOH HOH A . F 5 HOH 303 525 307 HOH HOH A . F 5 HOH 304 526 308 HOH HOH A . F 5 HOH 305 527 309 HOH HOH A . F 5 HOH 306 528 310 HOH HOH A . F 5 HOH 307 529 311 HOH HOH A . F 5 HOH 308 530 312 HOH HOH A . F 5 HOH 309 531 313 HOH HOH A . F 5 HOH 310 532 314 HOH HOH A . F 5 HOH 311 533 315 HOH HOH A . F 5 HOH 312 534 316 HOH HOH A . F 5 HOH 313 535 317 HOH HOH A . F 5 HOH 314 536 318 HOH HOH A . F 5 HOH 315 537 319 HOH HOH A . F 5 HOH 316 538 320 HOH HOH A . F 5 HOH 317 539 321 HOH HOH A . F 5 HOH 318 540 322 HOH HOH A . F 5 HOH 319 541 323 HOH HOH A . F 5 HOH 320 542 324 HOH HOH A . F 5 HOH 321 543 325 HOH HOH A . F 5 HOH 322 544 326 HOH HOH A . F 5 HOH 323 545 327 HOH HOH A . F 5 HOH 324 546 328 HOH HOH A . F 5 HOH 325 547 329 HOH HOH A . F 5 HOH 326 548 330 HOH HOH A . F 5 HOH 327 549 331 HOH HOH A . F 5 HOH 328 550 332 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 17 A MSE 16 ? MET SELENOMETHIONINE 3 A MSE 78 A MSE 77 ? MET SELENOMETHIONINE 4 A MSE 163 A MSE 162 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.4.0067 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html ? ? 5 PDB_EXTRACT 3.004 'September 10, 2007' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3DLC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE STRAIN CLONED, METHANOCOCCUS MARIPALUDIS JJ, DIFFERS FROM THE DATABASE SEQUENCE STRAIN, METHANOCOCCUS MARIPALUDIS S2. DNA SEQUENCING OF THE CLONED CONSTRUCT SHOWS THE CONSTRUCT HAS THE FOLLOWING SEQUENCE DIFFERENCES WHEN COMPARED TO THE DATABASE SEQUENCE: N45T, D89N, T127A, V194I AND E202G. THESE SEQUENCE DIFFERENCES ARE SUPPORTED BY THE ELECTRON DENSITY. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 159 ? B O A HOH 502 ? ? 2.05 2 1 O A HOH 299 ? ? O A HOH 538 ? ? 2.09 3 1 O A HOH 230 ? ? O A HOH 499 ? ? 2.14 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 38 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 A _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 38 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 A _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 38 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 A _pdbx_validate_rmsd_angle.angle_value 123.57 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.27 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 22 ? ? -123.11 -97.72 2 1 ASN A 103 ? ? -161.07 72.82 3 1 ASP A 125 ? ? 36.32 66.44 4 1 TYR A 144 ? ? -152.18 87.16 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 175 ? CG ? A LYS 176 CG 2 1 Y 1 A LYS 175 ? CD ? A LYS 176 CD 3 1 Y 1 A LYS 175 ? CE ? A LYS 176 CE 4 1 Y 1 A LYS 175 ? NZ ? A LYS 176 NZ 5 1 Y 1 A GLU 180 ? CG ? A GLU 181 CG 6 1 Y 1 A GLU 180 ? CD ? A GLU 181 CD 7 1 Y 1 A GLU 180 ? OE1 ? A GLU 181 OE1 8 1 Y 1 A GLU 180 ? OE2 ? A GLU 181 OE2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 S-ADENOSYLMETHIONINE SAM 4 GLYCEROL GOL 5 water HOH #