data_3DLR # _entry.id 3DLR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3DLR pdb_00003dlr 10.2210/pdb3dlr/pdb RCSB RCSB048196 ? ? WWPDB D_1000048196 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2019-07-24 4 'Structure model' 1 3 2019-10-23 5 'Structure model' 1 4 2023-08-30 6 'Structure model' 1 5 2023-11-15 7 'Structure model' 1 6 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 5 'Structure model' Advisory 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Database references' 13 5 'Structure model' 'Derived calculations' 14 5 'Structure model' 'Refinement description' 15 6 'Structure model' 'Data collection' 16 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 3 3 'Structure model' software 4 3 'Structure model' struct 5 3 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' database_2 10 5 'Structure model' pdbx_initial_refinement_model 11 5 'Structure model' pdbx_struct_conn_angle 12 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 13 5 'Structure model' struct_conn 14 5 'Structure model' struct_site 15 6 'Structure model' chem_comp_atom 16 6 'Structure model' chem_comp_bond 17 7 'Structure model' pdbx_entry_details 18 7 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 2 3 'Structure model' '_software.name' 3 3 'Structure model' '_software.version' 4 3 'Structure model' '_struct.pdbx_descriptor' 5 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.value' 22 5 'Structure model' '_struct_conn.pdbx_dist_value' 23 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' 38 6 'Structure model' '_chem_comp_atom.atom_id' 39 6 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DLR _pdbx_database_status.recvd_initial_deposition_date 2008-06-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1cxu _pdbx_database_related.details '1.42A RESOLUTION ASV INTEGRASE CORE DOMAIN FROM CITRATE' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Valkov, E.' 1 'Cherepanov, P.' 2 # _citation.id primary _citation.title 'Functional and structural characterization of the integrase from the prototype foamy virus.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 37 _citation.page_first 243 _citation.page_last 255 _citation.year 2009 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19036793 _citation.pdbx_database_id_DOI 10.1093/nar/gkn938 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valkov, E.' 1 ? primary 'Gupta, S.S.' 2 ? primary 'Hare, S.' 3 ? primary 'Helander, A.' 4 ? primary 'Roversi, P.' 5 ? primary 'McClure, M.' 6 ? primary 'Cherepanov, P.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Integrase 22646.635 1 ? ? 'catalytic core domain' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 48 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Integrase, IN, p42In' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPGSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDG(MSE)TGFTWLYPTKAPSTSATVKSLNVLTSIAIPKV IHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVL KYTPHQLLFGIDSNTPFANQDTLDLTREEELSLLQEIRTSLYHPST ; _entity_poly.pdbx_seq_one_letter_code_can ;GPGSGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSIAIPKVIHSD QGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTP HQLLFGIDSNTPFANQDTLDLTREEELSLLQEIRTSLYHPST ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 PRO n 1 7 ILE n 1 8 LEU n 1 9 ARG n 1 10 PRO n 1 11 ASP n 1 12 ARG n 1 13 PRO n 1 14 GLN n 1 15 LYS n 1 16 PRO n 1 17 PHE n 1 18 ASP n 1 19 LYS n 1 20 PHE n 1 21 PHE n 1 22 ILE n 1 23 ASP n 1 24 TYR n 1 25 ILE n 1 26 GLY n 1 27 PRO n 1 28 LEU n 1 29 PRO n 1 30 PRO n 1 31 SER n 1 32 GLN n 1 33 GLY n 1 34 TYR n 1 35 LEU n 1 36 TYR n 1 37 VAL n 1 38 LEU n 1 39 VAL n 1 40 VAL n 1 41 VAL n 1 42 ASP n 1 43 GLY n 1 44 MSE n 1 45 THR n 1 46 GLY n 1 47 PHE n 1 48 THR n 1 49 TRP n 1 50 LEU n 1 51 TYR n 1 52 PRO n 1 53 THR n 1 54 LYS n 1 55 ALA n 1 56 PRO n 1 57 SER n 1 58 THR n 1 59 SER n 1 60 ALA n 1 61 THR n 1 62 VAL n 1 63 LYS n 1 64 SER n 1 65 LEU n 1 66 ASN n 1 67 VAL n 1 68 LEU n 1 69 THR n 1 70 SER n 1 71 ILE n 1 72 ALA n 1 73 ILE n 1 74 PRO n 1 75 LYS n 1 76 VAL n 1 77 ILE n 1 78 HIS n 1 79 SER n 1 80 ASP n 1 81 GLN n 1 82 GLY n 1 83 ALA n 1 84 ALA n 1 85 PHE n 1 86 THR n 1 87 SER n 1 88 SER n 1 89 THR n 1 90 PHE n 1 91 ALA n 1 92 GLU n 1 93 TRP n 1 94 ALA n 1 95 LYS n 1 96 GLU n 1 97 ARG n 1 98 GLY n 1 99 ILE n 1 100 HIS n 1 101 LEU n 1 102 GLU n 1 103 PHE n 1 104 SER n 1 105 THR n 1 106 PRO n 1 107 TYR n 1 108 HIS n 1 109 PRO n 1 110 GLN n 1 111 SER n 1 112 SER n 1 113 GLY n 1 114 LYS n 1 115 VAL n 1 116 GLU n 1 117 ARG n 1 118 LYS n 1 119 ASN n 1 120 SER n 1 121 ASP n 1 122 ILE n 1 123 LYS n 1 124 ARG n 1 125 LEU n 1 126 LEU n 1 127 THR n 1 128 LYS n 1 129 LEU n 1 130 LEU n 1 131 VAL n 1 132 GLY n 1 133 ARG n 1 134 PRO n 1 135 THR n 1 136 LYS n 1 137 TRP n 1 138 TYR n 1 139 ASP n 1 140 LEU n 1 141 LEU n 1 142 PRO n 1 143 VAL n 1 144 VAL n 1 145 GLN n 1 146 LEU n 1 147 ALA n 1 148 LEU n 1 149 ASN n 1 150 ASN n 1 151 THR n 1 152 TYR n 1 153 SER n 1 154 PRO n 1 155 VAL n 1 156 LEU n 1 157 LYS n 1 158 TYR n 1 159 THR n 1 160 PRO n 1 161 HIS n 1 162 GLN n 1 163 LEU n 1 164 LEU n 1 165 PHE n 1 166 GLY n 1 167 ILE n 1 168 ASP n 1 169 SER n 1 170 ASN n 1 171 THR n 1 172 PRO n 1 173 PHE n 1 174 ALA n 1 175 ASN n 1 176 GLN n 1 177 ASP n 1 178 THR n 1 179 LEU n 1 180 ASP n 1 181 LEU n 1 182 THR n 1 183 ARG n 1 184 GLU n 1 185 GLU n 1 186 GLU n 1 187 LEU n 1 188 SER n 1 189 LEU n 1 190 LEU n 1 191 GLN n 1 192 GLU n 1 193 ILE n 1 194 ARG n 1 195 THR n 1 196 SER n 1 197 LEU n 1 198 TYR n 1 199 HIS n 1 200 PRO n 1 201 SER n 1 202 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'SFVcpz(hu)' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HSRV2 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human spumaretrovirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain B834 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pCPH6P-HSRV2(88-286)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 106 ? ? ? A . n A 1 2 PRO 2 107 ? ? ? A . n A 1 3 GLY 3 108 ? ? ? A . n A 1 4 SER 4 109 ? ? ? A . n A 1 5 GLY 5 110 ? ? ? A . n A 1 6 PRO 6 111 ? ? ? A . n A 1 7 ILE 7 112 ? ? ? A . n A 1 8 LEU 8 113 ? ? ? A . n A 1 9 ARG 9 114 ? ? ? A . n A 1 10 PRO 10 115 ? ? ? A . n A 1 11 ASP 11 116 ? ? ? A . n A 1 12 ARG 12 117 ? ? ? A . n A 1 13 PRO 13 118 ? ? ? A . n A 1 14 GLN 14 119 119 GLN GLN A . n A 1 15 LYS 15 120 120 LYS LYS A . n A 1 16 PRO 16 121 121 PRO PRO A . n A 1 17 PHE 17 122 122 PHE PHE A . n A 1 18 ASP 18 123 123 ASP ASP A . n A 1 19 LYS 19 124 124 LYS LYS A . n A 1 20 PHE 20 125 125 PHE PHE A . n A 1 21 PHE 21 126 126 PHE PHE A . n A 1 22 ILE 22 127 127 ILE ILE A . n A 1 23 ASP 23 128 128 ASP ASP A . n A 1 24 TYR 24 129 129 TYR TYR A . n A 1 25 ILE 25 130 130 ILE ILE A . n A 1 26 GLY 26 131 131 GLY GLY A . n A 1 27 PRO 27 132 132 PRO PRO A . n A 1 28 LEU 28 133 133 LEU LEU A . n A 1 29 PRO 29 134 134 PRO PRO A . n A 1 30 PRO 30 135 135 PRO PRO A . n A 1 31 SER 31 136 136 SER SER A . n A 1 32 GLN 32 137 137 GLN GLN A . n A 1 33 GLY 33 138 138 GLY GLY A . n A 1 34 TYR 34 139 139 TYR TYR A . n A 1 35 LEU 35 140 140 LEU LEU A . n A 1 36 TYR 36 141 141 TYR TYR A . n A 1 37 VAL 37 142 142 VAL VAL A . n A 1 38 LEU 38 143 143 LEU LEU A . n A 1 39 VAL 39 144 144 VAL VAL A . n A 1 40 VAL 40 145 145 VAL VAL A . n A 1 41 VAL 41 146 146 VAL VAL A . n A 1 42 ASP 42 147 147 ASP ASP A . n A 1 43 GLY 43 148 148 GLY GLY A . n A 1 44 MSE 44 149 149 MSE MSE A . n A 1 45 THR 45 150 150 THR THR A . n A 1 46 GLY 46 151 151 GLY GLY A . n A 1 47 PHE 47 152 152 PHE PHE A . n A 1 48 THR 48 153 153 THR THR A . n A 1 49 TRP 49 154 154 TRP TRP A . n A 1 50 LEU 50 155 155 LEU LEU A . n A 1 51 TYR 51 156 156 TYR TYR A . n A 1 52 PRO 52 157 157 PRO PRO A . n A 1 53 THR 53 158 158 THR THR A . n A 1 54 LYS 54 159 159 LYS LYS A . n A 1 55 ALA 55 160 160 ALA ALA A . n A 1 56 PRO 56 161 161 PRO PRO A . n A 1 57 SER 57 162 162 SER SER A . n A 1 58 THR 58 163 163 THR THR A . n A 1 59 SER 59 164 164 SER SER A . n A 1 60 ALA 60 165 165 ALA ALA A . n A 1 61 THR 61 166 166 THR THR A . n A 1 62 VAL 62 167 167 VAL VAL A . n A 1 63 LYS 63 168 168 LYS LYS A . n A 1 64 SER 64 169 169 SER SER A . n A 1 65 LEU 65 170 170 LEU LEU A . n A 1 66 ASN 66 171 171 ASN ASN A . n A 1 67 VAL 67 172 172 VAL VAL A . n A 1 68 LEU 68 173 173 LEU LEU A . n A 1 69 THR 69 174 174 THR THR A . n A 1 70 SER 70 175 175 SER SER A . n A 1 71 ILE 71 176 176 ILE ILE A . n A 1 72 ALA 72 177 177 ALA ALA A . n A 1 73 ILE 73 178 178 ILE ILE A . n A 1 74 PRO 74 179 179 PRO PRO A . n A 1 75 LYS 75 180 180 LYS LYS A . n A 1 76 VAL 76 181 181 VAL VAL A . n A 1 77 ILE 77 182 182 ILE ILE A . n A 1 78 HIS 78 183 183 HIS HIS A . n A 1 79 SER 79 184 184 SER SER A . n A 1 80 ASP 80 185 185 ASP ASP A . n A 1 81 GLN 81 186 186 GLN GLN A . n A 1 82 GLY 82 187 187 GLY GLY A . n A 1 83 ALA 83 188 188 ALA ALA A . n A 1 84 ALA 84 189 189 ALA ALA A . n A 1 85 PHE 85 190 190 PHE PHE A . n A 1 86 THR 86 191 191 THR THR A . n A 1 87 SER 87 192 192 SER SER A . n A 1 88 SER 88 193 193 SER SER A . n A 1 89 THR 89 194 194 THR THR A . n A 1 90 PHE 90 195 195 PHE PHE A . n A 1 91 ALA 91 196 196 ALA ALA A . n A 1 92 GLU 92 197 197 GLU GLU A . n A 1 93 TRP 93 198 198 TRP TRP A . n A 1 94 ALA 94 199 199 ALA ALA A . n A 1 95 LYS 95 200 200 LYS LYS A . n A 1 96 GLU 96 201 201 GLU GLU A . n A 1 97 ARG 97 202 202 ARG ARG A . n A 1 98 GLY 98 203 203 GLY GLY A . n A 1 99 ILE 99 204 204 ILE ILE A . n A 1 100 HIS 100 205 205 HIS HIS A . n A 1 101 LEU 101 206 206 LEU LEU A . n A 1 102 GLU 102 207 207 GLU GLU A . n A 1 103 PHE 103 208 208 PHE PHE A . n A 1 104 SER 104 209 209 SER SER A . n A 1 105 THR 105 210 ? ? ? A . n A 1 106 PRO 106 211 ? ? ? A . n A 1 107 TYR 107 212 ? ? ? A . n A 1 108 HIS 108 213 ? ? ? A . n A 1 109 PRO 109 214 ? ? ? A . n A 1 110 GLN 110 215 ? ? ? A . n A 1 111 SER 111 216 ? ? ? A . n A 1 112 SER 112 217 ? ? ? A . n A 1 113 GLY 113 218 ? ? ? A . n A 1 114 LYS 114 219 ? ? ? A . n A 1 115 VAL 115 220 220 VAL VAL A . n A 1 116 GLU 116 221 221 GLU GLU A . n A 1 117 ARG 117 222 222 ARG ARG A . n A 1 118 LYS 118 223 223 LYS LYS A . n A 1 119 ASN 119 224 224 ASN ASN A . n A 1 120 SER 120 225 225 SER SER A . n A 1 121 ASP 121 226 226 ASP ASP A . n A 1 122 ILE 122 227 227 ILE ILE A . n A 1 123 LYS 123 228 228 LYS LYS A . n A 1 124 ARG 124 229 229 ARG ARG A . n A 1 125 LEU 125 230 230 LEU LEU A . n A 1 126 LEU 126 231 231 LEU LEU A . n A 1 127 THR 127 232 232 THR THR A . n A 1 128 LYS 128 233 233 LYS LYS A . n A 1 129 LEU 129 234 234 LEU LEU A . n A 1 130 LEU 130 235 235 LEU LEU A . n A 1 131 VAL 131 236 236 VAL VAL A . n A 1 132 GLY 132 237 237 GLY GLY A . n A 1 133 ARG 133 238 238 ARG ARG A . n A 1 134 PRO 134 239 239 PRO PRO A . n A 1 135 THR 135 240 240 THR THR A . n A 1 136 LYS 136 241 241 LYS LYS A . n A 1 137 TRP 137 242 242 TRP TRP A . n A 1 138 TYR 138 243 243 TYR TYR A . n A 1 139 ASP 139 244 244 ASP ASP A . n A 1 140 LEU 140 245 245 LEU LEU A . n A 1 141 LEU 141 246 246 LEU LEU A . n A 1 142 PRO 142 247 247 PRO PRO A . n A 1 143 VAL 143 248 248 VAL VAL A . n A 1 144 VAL 144 249 249 VAL VAL A . n A 1 145 GLN 145 250 250 GLN GLN A . n A 1 146 LEU 146 251 251 LEU LEU A . n A 1 147 ALA 147 252 252 ALA ALA A . n A 1 148 LEU 148 253 253 LEU LEU A . n A 1 149 ASN 149 254 254 ASN ASN A . n A 1 150 ASN 150 255 255 ASN ASN A . n A 1 151 THR 151 256 256 THR THR A . n A 1 152 TYR 152 257 257 TYR TYR A . n A 1 153 SER 153 258 258 SER SER A . n A 1 154 PRO 154 259 259 PRO PRO A . n A 1 155 VAL 155 260 260 VAL VAL A . n A 1 156 LEU 156 261 261 LEU LEU A . n A 1 157 LYS 157 262 262 LYS LYS A . n A 1 158 TYR 158 263 263 TYR TYR A . n A 1 159 THR 159 264 264 THR THR A . n A 1 160 PRO 160 265 265 PRO PRO A . n A 1 161 HIS 161 266 266 HIS HIS A . n A 1 162 GLN 162 267 267 GLN GLN A . n A 1 163 LEU 163 268 268 LEU LEU A . n A 1 164 LEU 164 269 269 LEU LEU A . n A 1 165 PHE 165 270 270 PHE PHE A . n A 1 166 GLY 166 271 271 GLY GLY A . n A 1 167 ILE 167 272 ? ? ? A . n A 1 168 ASP 168 273 ? ? ? A . n A 1 169 SER 169 274 ? ? ? A . n A 1 170 ASN 170 275 ? ? ? A . n A 1 171 THR 171 276 ? ? ? A . n A 1 172 PRO 172 277 ? ? ? A . n A 1 173 PHE 173 278 ? ? ? A . n A 1 174 ALA 174 279 ? ? ? A . n A 1 175 ASN 175 280 ? ? ? A . n A 1 176 GLN 176 281 ? ? ? A . n A 1 177 ASP 177 282 ? ? ? A . n A 1 178 THR 178 283 ? ? ? A . n A 1 179 LEU 179 284 ? ? ? A . n A 1 180 ASP 180 285 ? ? ? A . n A 1 181 LEU 181 286 ? ? ? A . n A 1 182 THR 182 287 ? ? ? A . n A 1 183 ARG 183 288 ? ? ? A . n A 1 184 GLU 184 289 ? ? ? A . n A 1 185 GLU 185 290 ? ? ? A . n A 1 186 GLU 186 291 ? ? ? A . n A 1 187 LEU 187 292 ? ? ? A . n A 1 188 SER 188 293 293 SER SER A . n A 1 189 LEU 189 294 294 LEU LEU A . n A 1 190 LEU 190 295 295 LEU LEU A . n A 1 191 GLN 191 296 296 GLN GLN A . n A 1 192 GLU 192 297 297 GLU GLU A . n A 1 193 ILE 193 298 298 ILE ILE A . n A 1 194 ARG 194 299 299 ARG ARG A . n A 1 195 THR 195 300 300 THR THR A . n A 1 196 SER 196 301 301 SER SER A . n A 1 197 LEU 197 302 302 LEU LEU A . n A 1 198 TYR 198 303 303 TYR TYR A . n A 1 199 HIS 199 304 304 HIS HIS A . n A 1 200 PRO 200 305 ? ? ? A . n A 1 201 SER 201 306 ? ? ? A . n A 1 202 THR 202 307 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 49 49 MG MG A . C 3 HOH 1 1 1 HOH HOH A . C 3 HOH 2 2 2 HOH HOH A . C 3 HOH 3 3 3 HOH HOH A . C 3 HOH 4 4 4 HOH HOH A . C 3 HOH 5 5 5 HOH HOH A . C 3 HOH 6 6 6 HOH HOH A . C 3 HOH 7 7 7 HOH HOH A . C 3 HOH 8 8 8 HOH HOH A . C 3 HOH 9 9 9 HOH HOH A . C 3 HOH 10 10 10 HOH HOH A . C 3 HOH 11 11 11 HOH HOH A . C 3 HOH 12 12 12 HOH HOH A . C 3 HOH 13 13 13 HOH HOH A . C 3 HOH 14 14 14 HOH HOH A . C 3 HOH 15 15 15 HOH HOH A . C 3 HOH 16 16 16 HOH HOH A . C 3 HOH 17 17 17 HOH HOH A . C 3 HOH 18 18 18 HOH HOH A . C 3 HOH 19 19 19 HOH HOH A . C 3 HOH 20 20 20 HOH HOH A . C 3 HOH 21 21 21 HOH HOH A . C 3 HOH 22 22 22 HOH HOH A . C 3 HOH 23 23 23 HOH HOH A . C 3 HOH 24 24 24 HOH HOH A . C 3 HOH 25 25 25 HOH HOH A . C 3 HOH 26 26 26 HOH HOH A . C 3 HOH 27 27 27 HOH HOH A . C 3 HOH 28 28 28 HOH HOH A . C 3 HOH 29 29 29 HOH HOH A . C 3 HOH 30 30 30 HOH HOH A . C 3 HOH 31 31 31 HOH HOH A . C 3 HOH 32 32 32 HOH HOH A . C 3 HOH 33 33 33 HOH HOH A . C 3 HOH 34 34 34 HOH HOH A . C 3 HOH 35 35 35 HOH HOH A . C 3 HOH 36 36 36 HOH HOH A . C 3 HOH 37 37 37 HOH HOH A . C 3 HOH 38 38 38 HOH HOH A . C 3 HOH 39 39 39 HOH HOH A . C 3 HOH 40 40 40 HOH HOH A . C 3 HOH 41 41 41 HOH HOH A . C 3 HOH 42 42 42 HOH HOH A . C 3 HOH 43 43 43 HOH HOH A . C 3 HOH 44 44 44 HOH HOH A . C 3 HOH 45 45 45 HOH HOH A . C 3 HOH 46 46 46 HOH HOH A . C 3 HOH 47 47 47 HOH HOH A . C 3 HOH 48 48 48 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 120 ? CE ? A LYS 15 CE 2 1 Y 0 A LYS 120 ? NZ ? A LYS 15 NZ 3 1 Y 0 A GLU 197 ? CD ? A GLU 92 CD 4 1 Y 0 A GLU 197 ? OE1 ? A GLU 92 OE1 5 1 Y 0 A GLU 197 ? OE2 ? A GLU 92 OE2 6 1 Y 0 A GLU 221 ? CG ? A GLU 116 CG 7 1 Y 0 A GLU 221 ? CD ? A GLU 116 CD 8 1 Y 0 A GLU 221 ? OE1 ? A GLU 116 OE1 9 1 Y 0 A GLU 221 ? OE2 ? A GLU 116 OE2 10 1 Y 0 A ARG 222 ? CD ? A ARG 117 CD 11 1 Y 0 A ARG 222 ? NE ? A ARG 117 NE 12 1 Y 0 A ARG 222 ? CZ ? A ARG 117 CZ 13 1 Y 0 A ARG 222 ? NH1 ? A ARG 117 NH1 14 1 Y 0 A ARG 222 ? NH2 ? A ARG 117 NH2 15 1 Y 0 A LYS 233 ? CD ? A LYS 128 CD 16 1 Y 0 A LYS 233 ? CE ? A LYS 128 CE 17 1 Y 0 A LYS 233 ? NZ ? A LYS 128 NZ 18 1 Y 0 A GLU 297 ? CD ? A GLU 192 CD 19 1 Y 0 A GLU 297 ? OE1 ? A GLU 192 OE1 20 1 Y 0 A GLU 297 ? OE2 ? A GLU 192 OE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement . ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHARP phasing . ? 4 REFMAC refinement 5.2.0019 ? 5 # _cell.entry_id 3DLR _cell.length_a 52.140 _cell.length_b 52.140 _cell.length_c 239.780 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DLR _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3DLR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.79 _exptl_crystal.description ;1cxu was used as a search model for molecular replacement. Solution found in PHASER (Euler angles 310.7, 84.0, 41.7; fractional coordinates -1.272, 0.422, 0.077) was used as a starting model for density modification in SOLOMON to improve and extend Se-SAD derived phases. ; _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;1.0 M ammonium formate, 0.2 M magnesium cloride, 5 mM dithiotreitol, 0.1 M 2-(N-morpholino)ethanesulfonic acid, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'MARMOSAIC 225 mm CCD' 2008-01-26 ? 2 CCD 'MARMOSAIC 225 mm CCD' 2008-01-26 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si(111) monochromator' 'SINGLE WAVELENGTH' x-ray 2 2 M 'Si(111) monochromator' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.95373 1.0 2 0.97837 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE BM14' ESRF BM14 ? 0.95373 2 SYNCHROTRON 'ESRF BEAMLINE BM14' ESRF BM14 ? 0.97837 # _reflns.entry_id 3DLR _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 45.18 _reflns.number_all 10584 _reflns.number_obs 10584 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.105 _reflns.pdbx_netI_over_sigmaI 17.4 _reflns.B_iso_Wilson_estimate 32.6 _reflns.pdbx_redundancy 8.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.32 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.681 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 9.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1477 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DLR _refine.ls_number_reflns_obs 9540 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 45.18 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.20 _refine.ls_R_factor_obs 0.21394 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20905 _refine.ls_R_factor_R_free 0.25922 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 1042 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 32.046 _refine.aniso_B[1][1] 0.82 _refine.aniso_B[2][2] 0.82 _refine.aniso_B[3][3] -1.23 _refine.aniso_B[1][2] 0.41 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1cxu' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.255 _refine.pdbx_overall_ESU_R_Free 0.216 _refine.overall_SU_ML 0.141 _refine.overall_SU_B 10.771 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1241 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 48 _refine_hist.number_atoms_total 1290 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 45.18 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_refined_d 0.010 0.022 ? 1255 'X-RAY DIFFRACTION' ? f_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? f_angle_refined_deg 1.122 1.969 ? 1712 'X-RAY DIFFRACTION' ? f_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_1_deg 5.838 5.000 ? 152 'X-RAY DIFFRACTION' ? f_dihedral_angle_2_deg 35.371 23.111 ? 45 'X-RAY DIFFRACTION' ? f_dihedral_angle_3_deg 16.041 15.000 ? 202 'X-RAY DIFFRACTION' ? f_dihedral_angle_4_deg 16.931 15.000 ? 4 'X-RAY DIFFRACTION' ? f_chiral_restr 0.073 0.200 ? 201 'X-RAY DIFFRACTION' ? f_gen_planes_refined 0.004 0.020 ? 918 'X-RAY DIFFRACTION' ? f_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_nbd_refined 0.197 0.200 ? 523 'X-RAY DIFFRACTION' ? f_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_nbtor_refined 0.307 0.200 ? 860 'X-RAY DIFFRACTION' ? f_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_xyhbond_nbd_refined 0.114 0.200 ? 60 'X-RAY DIFFRACTION' ? f_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_metal_ion_refined 0.099 0.200 ? 1 'X-RAY DIFFRACTION' ? f_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_symmetry_vdw_refined 0.149 0.200 ? 39 'X-RAY DIFFRACTION' ? f_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_symmetry_hbond_refined 0.131 0.200 ? 4 'X-RAY DIFFRACTION' ? f_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? f_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_mcbond_it 0.558 1.500 ? 791 'X-RAY DIFFRACTION' ? f_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? f_mcangle_it 1.025 2.000 ? 1264 'X-RAY DIFFRACTION' ? f_scbond_it 1.746 3.000 ? 535 'X-RAY DIFFRACTION' ? f_scangle_it 2.472 4.500 ? 448 'X-RAY DIFFRACTION' ? f_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? f_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? f_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 683 _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.percent_reflns_obs 98.83 _refine_ls_shell.R_factor_R_free 0.223 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3DLR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3DLR _struct.title 'Crystal structure of the catalytic core domain from PFV integrase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DLR _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Retroviral integrase, RVE superfamily domain, DNA integration, DNA recombination, Endonuclease, Hydrolase, Magnesium, Metal-binding, Multifunctional enzyme, Nuclease, Nucleotidyltransferase, Nucleus, Transferase, Virion ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POL_FOAMV _struct_ref.pdbx_db_accession P14350 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYLYVLVVVDGMTGFTWLYPTKAPSTSATVKSLNVLTSIAIPKVIHSDQG AAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQ LLFGIDSNTPFANQDTLDLTREEELSLLQEIRTSLYHPST ; _struct_ref.pdbx_align_begin 859 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DLR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 202 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14350 _struct_ref_seq.db_align_beg 859 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1058 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 108 _struct_ref_seq.pdbx_auth_seq_align_end 307 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DLR GLY A 1 ? UNP P14350 ? ? 'expression tag' 106 1 1 3DLR PRO A 2 ? UNP P14350 ? ? 'expression tag' 107 2 1 3DLR GLY A 3 ? UNP P14350 ALA 859 variant 108 3 1 3DLR SER A 112 ? UNP P14350 GLY 968 variant 217 4 1 3DLR GLY A 113 ? UNP P14350 SER 969 variant 218 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2180 ? 1 MORE -24 ? 1 'SSA (A^2)' 14860 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5000000000 0.8660254038 0.0000000000 -26.0700000000 0.8660254038 -0.5000000000 0.0000000000 45.1545645533 0.0000000000 0.0000000000 -1.0000000000 39.9633333333 # _struct_biol.id 1 _struct_biol.details 'The second part of the biologically-relevant dimer is generated by the two-fold operation: x, 1-x+y, 1/6-z' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 57 ? THR A 69 ? SER A 162 THR A 174 1 ? 13 HELX_P HELX_P2 2 GLY A 82 ? SER A 87 ? GLY A 187 SER A 192 1 ? 6 HELX_P HELX_P3 3 SER A 87 ? GLY A 98 ? SER A 192 GLY A 203 1 ? 12 HELX_P HELX_P4 4 VAL A 115 ? VAL A 131 ? VAL A 220 VAL A 236 1 ? 17 HELX_P HELX_P5 5 ARG A 133 ? THR A 135 ? ARG A 238 THR A 240 5 ? 3 HELX_P HELX_P6 6 LYS A 136 ? ASN A 150 ? LYS A 241 ASN A 255 1 ? 15 HELX_P HELX_P7 7 THR A 159 ? PHE A 165 ? THR A 264 PHE A 270 1 ? 7 HELX_P HELX_P8 8 SER A 188 ? HIS A 199 ? SER A 293 HIS A 304 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 43 C ? ? ? 1_555 A MSE 44 N ? ? A GLY 148 A MSE 149 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale2 covale both ? A MSE 44 C ? ? ? 1_555 A THR 45 N ? ? A MSE 149 A THR 150 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? C HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 36 A MG 49 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc2 metalc ? ? C HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 39 A MG 49 1_555 ? ? ? ? ? ? ? 2.073 ? ? metalc3 metalc ? ? C HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 43 A MG 49 1_555 ? ? ? ? ? ? ? 1.891 ? ? metalc4 metalc ? ? C HOH . O ? ? ? 1_555 B MG . MG ? ? A HOH 44 A MG 49 1_555 ? ? ? ? ? ? ? 2.451 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 A ASP 23 OD1 ? ? A MG 49 A ASP 128 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 A ASP 80 OD1 ? ? A MG 49 A ASP 185 1_555 ? ? ? ? ? ? ? 2.100 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? C HOH . ? A HOH 36 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 O ? C HOH . ? A HOH 39 ? 1_555 117.1 ? 2 O ? C HOH . ? A HOH 36 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 O ? C HOH . ? A HOH 43 ? 1_555 87.0 ? 3 O ? C HOH . ? A HOH 39 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 O ? C HOH . ? A HOH 43 ? 1_555 100.4 ? 4 O ? C HOH . ? A HOH 36 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 O ? C HOH . ? A HOH 44 ? 1_555 79.8 ? 5 O ? C HOH . ? A HOH 39 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 O ? C HOH . ? A HOH 44 ? 1_555 160.3 ? 6 O ? C HOH . ? A HOH 43 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 O ? C HOH . ? A HOH 44 ? 1_555 89.9 ? 7 O ? C HOH . ? A HOH 36 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 23 ? A ASP 128 ? 1_555 162.4 ? 8 O ? C HOH . ? A HOH 39 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 23 ? A ASP 128 ? 1_555 77.7 ? 9 O ? C HOH . ? A HOH 43 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 23 ? A ASP 128 ? 1_555 100.2 ? 10 O ? C HOH . ? A HOH 44 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 23 ? A ASP 128 ? 1_555 84.1 ? 11 O ? C HOH . ? A HOH 36 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 80 ? A ASP 185 ? 1_555 87.5 ? 12 O ? C HOH . ? A HOH 39 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 80 ? A ASP 185 ? 1_555 91.0 ? 13 O ? C HOH . ? A HOH 43 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 80 ? A ASP 185 ? 1_555 168.6 ? 14 O ? C HOH . ? A HOH 44 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 80 ? A ASP 185 ? 1_555 79.3 ? 15 OD1 ? A ASP 23 ? A ASP 128 ? 1_555 MG ? B MG . ? A MG 49 ? 1_555 OD1 ? A ASP 80 ? A ASP 185 ? 1_555 82.5 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id MSE _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 44 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id MSE _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 149 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id MET _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id MSE _pdbx_modification_feature.type Selenomethionine _pdbx_modification_feature.category 'Named protein modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 26 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 131 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 27 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 132 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.74 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 48 ? THR A 53 ? THR A 153 THR A 158 A 2 TYR A 36 ? ASP A 42 ? TYR A 141 ASP A 147 A 3 LYS A 19 ? ILE A 25 ? LYS A 124 ILE A 130 A 4 VAL A 76 ? ASP A 80 ? VAL A 181 ASP A 185 A 5 HIS A 100 ? SER A 104 ? HIS A 205 SER A 209 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 51 ? O TYR A 156 N LEU A 38 ? N LEU A 143 A 2 3 O VAL A 39 ? O VAL A 144 N ASP A 23 ? N ASP A 128 A 3 4 N PHE A 20 ? N PHE A 125 O HIS A 78 ? O HIS A 183 A 4 5 N ILE A 77 ? N ILE A 182 O GLU A 102 ? O GLU A 207 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 49 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 49' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH C . ? HOH A 36 . ? 1_555 ? 2 AC1 6 HOH C . ? HOH A 39 . ? 1_555 ? 3 AC1 6 HOH C . ? HOH A 43 . ? 1_555 ? 4 AC1 6 HOH C . ? HOH A 44 . ? 1_555 ? 5 AC1 6 ASP A 23 ? ASP A 128 . ? 1_555 ? 6 AC1 6 ASP A 80 ? ASP A 185 . ? 1_555 ? # _pdbx_entry_details.entry_id 3DLR _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CD A LYS 120 ? ? CE A LYS 120 ? ? 1.207 1.508 -0.301 0.025 N 2 1 CG A GLU 197 ? ? CD A GLU 197 ? ? 1.410 1.515 -0.105 0.015 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 238 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -163.38 _pdbx_validate_torsion.psi 47.25 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 44 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 149 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined -0.0660 19.7150 14.1540 -0.0593 -0.1625 -0.1432 0.0565 -0.0181 -0.0245 2.0876 1.7800 2.6847 -0.1740 -0.1366 -0.7742 0.0058 0.0740 -0.1600 -0.0405 0.0673 -0.0445 0.2553 0.0082 -0.0731 'X-RAY DIFFRACTION' 2 ? refined -9.2100 22.5060 -3.0520 0.0130 0.2407 -0.1504 -0.1786 -0.0727 0.0904 29.9409 33.5029 17.7010 13.1846 11.6656 -8.8202 -0.4337 1.7411 0.8240 -0.4456 -0.1878 0.5624 -0.2635 1.1541 0.6216 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 119 A 14 A 271 A 166 ? 'X-RAY DIFFRACTION' ? 2 2 A 293 A 188 A 304 A 199 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 106 ? A GLY 1 2 1 Y 1 A PRO 107 ? A PRO 2 3 1 Y 1 A GLY 108 ? A GLY 3 4 1 Y 1 A SER 109 ? A SER 4 5 1 Y 1 A GLY 110 ? A GLY 5 6 1 Y 1 A PRO 111 ? A PRO 6 7 1 Y 1 A ILE 112 ? A ILE 7 8 1 Y 1 A LEU 113 ? A LEU 8 9 1 Y 1 A ARG 114 ? A ARG 9 10 1 Y 1 A PRO 115 ? A PRO 10 11 1 Y 1 A ASP 116 ? A ASP 11 12 1 Y 1 A ARG 117 ? A ARG 12 13 1 Y 1 A PRO 118 ? A PRO 13 14 1 Y 1 A THR 210 ? A THR 105 15 1 Y 1 A PRO 211 ? A PRO 106 16 1 Y 1 A TYR 212 ? A TYR 107 17 1 Y 1 A HIS 213 ? A HIS 108 18 1 Y 1 A PRO 214 ? A PRO 109 19 1 Y 1 A GLN 215 ? A GLN 110 20 1 Y 1 A SER 216 ? A SER 111 21 1 Y 1 A SER 217 ? A SER 112 22 1 Y 1 A GLY 218 ? A GLY 113 23 1 Y 1 A LYS 219 ? A LYS 114 24 1 Y 1 A ILE 272 ? A ILE 167 25 1 Y 1 A ASP 273 ? A ASP 168 26 1 Y 1 A SER 274 ? A SER 169 27 1 Y 1 A ASN 275 ? A ASN 170 28 1 Y 1 A THR 276 ? A THR 171 29 1 Y 1 A PRO 277 ? A PRO 172 30 1 Y 1 A PHE 278 ? A PHE 173 31 1 Y 1 A ALA 279 ? A ALA 174 32 1 Y 1 A ASN 280 ? A ASN 175 33 1 Y 1 A GLN 281 ? A GLN 176 34 1 Y 1 A ASP 282 ? A ASP 177 35 1 Y 1 A THR 283 ? A THR 178 36 1 Y 1 A LEU 284 ? A LEU 179 37 1 Y 1 A ASP 285 ? A ASP 180 38 1 Y 1 A LEU 286 ? A LEU 181 39 1 Y 1 A THR 287 ? A THR 182 40 1 Y 1 A ARG 288 ? A ARG 183 41 1 Y 1 A GLU 289 ? A GLU 184 42 1 Y 1 A GLU 290 ? A GLU 185 43 1 Y 1 A GLU 291 ? A GLU 186 44 1 Y 1 A LEU 292 ? A LEU 187 45 1 Y 1 A PRO 305 ? A PRO 200 46 1 Y 1 A SER 306 ? A SER 201 47 1 Y 1 A THR 307 ? A THR 202 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MG MG MG N N 216 MSE N N N N 217 MSE CA C N S 218 MSE C C N N 219 MSE O O N N 220 MSE OXT O N N 221 MSE CB C N N 222 MSE CG C N N 223 MSE SE SE N N 224 MSE CE C N N 225 MSE H H N N 226 MSE H2 H N N 227 MSE HA H N N 228 MSE HXT H N N 229 MSE HB2 H N N 230 MSE HB3 H N N 231 MSE HG2 H N N 232 MSE HG3 H N N 233 MSE HE1 H N N 234 MSE HE2 H N N 235 MSE HE3 H N N 236 PHE N N N N 237 PHE CA C N S 238 PHE C C N N 239 PHE O O N N 240 PHE CB C N N 241 PHE CG C Y N 242 PHE CD1 C Y N 243 PHE CD2 C Y N 244 PHE CE1 C Y N 245 PHE CE2 C Y N 246 PHE CZ C Y N 247 PHE OXT O N N 248 PHE H H N N 249 PHE H2 H N N 250 PHE HA H N N 251 PHE HB2 H N N 252 PHE HB3 H N N 253 PHE HD1 H N N 254 PHE HD2 H N N 255 PHE HE1 H N N 256 PHE HE2 H N N 257 PHE HZ H N N 258 PHE HXT H N N 259 PRO N N N N 260 PRO CA C N S 261 PRO C C N N 262 PRO O O N N 263 PRO CB C N N 264 PRO CG C N N 265 PRO CD C N N 266 PRO OXT O N N 267 PRO H H N N 268 PRO HA H N N 269 PRO HB2 H N N 270 PRO HB3 H N N 271 PRO HG2 H N N 272 PRO HG3 H N N 273 PRO HD2 H N N 274 PRO HD3 H N N 275 PRO HXT H N N 276 SER N N N N 277 SER CA C N S 278 SER C C N N 279 SER O O N N 280 SER CB C N N 281 SER OG O N N 282 SER OXT O N N 283 SER H H N N 284 SER H2 H N N 285 SER HA H N N 286 SER HB2 H N N 287 SER HB3 H N N 288 SER HG H N N 289 SER HXT H N N 290 THR N N N N 291 THR CA C N S 292 THR C C N N 293 THR O O N N 294 THR CB C N R 295 THR OG1 O N N 296 THR CG2 C N N 297 THR OXT O N N 298 THR H H N N 299 THR H2 H N N 300 THR HA H N N 301 THR HB H N N 302 THR HG1 H N N 303 THR HG21 H N N 304 THR HG22 H N N 305 THR HG23 H N N 306 THR HXT H N N 307 TRP N N N N 308 TRP CA C N S 309 TRP C C N N 310 TRP O O N N 311 TRP CB C N N 312 TRP CG C Y N 313 TRP CD1 C Y N 314 TRP CD2 C Y N 315 TRP NE1 N Y N 316 TRP CE2 C Y N 317 TRP CE3 C Y N 318 TRP CZ2 C Y N 319 TRP CZ3 C Y N 320 TRP CH2 C Y N 321 TRP OXT O N N 322 TRP H H N N 323 TRP H2 H N N 324 TRP HA H N N 325 TRP HB2 H N N 326 TRP HB3 H N N 327 TRP HD1 H N N 328 TRP HE1 H N N 329 TRP HE3 H N N 330 TRP HZ2 H N N 331 TRP HZ3 H N N 332 TRP HH2 H N N 333 TRP HXT H N N 334 TYR N N N N 335 TYR CA C N S 336 TYR C C N N 337 TYR O O N N 338 TYR CB C N N 339 TYR CG C Y N 340 TYR CD1 C Y N 341 TYR CD2 C Y N 342 TYR CE1 C Y N 343 TYR CE2 C Y N 344 TYR CZ C Y N 345 TYR OH O N N 346 TYR OXT O N N 347 TYR H H N N 348 TYR H2 H N N 349 TYR HA H N N 350 TYR HB2 H N N 351 TYR HB3 H N N 352 TYR HD1 H N N 353 TYR HD2 H N N 354 TYR HE1 H N N 355 TYR HE2 H N N 356 TYR HH H N N 357 TYR HXT H N N 358 VAL N N N N 359 VAL CA C N S 360 VAL C C N N 361 VAL O O N N 362 VAL CB C N N 363 VAL CG1 C N N 364 VAL CG2 C N N 365 VAL OXT O N N 366 VAL H H N N 367 VAL H2 H N N 368 VAL HA H N N 369 VAL HB H N N 370 VAL HG11 H N N 371 VAL HG12 H N N 372 VAL HG13 H N N 373 VAL HG21 H N N 374 VAL HG22 H N N 375 VAL HG23 H N N 376 VAL HXT H N N 377 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MSE N CA sing N N 205 MSE N H sing N N 206 MSE N H2 sing N N 207 MSE CA C sing N N 208 MSE CA CB sing N N 209 MSE CA HA sing N N 210 MSE C O doub N N 211 MSE C OXT sing N N 212 MSE OXT HXT sing N N 213 MSE CB CG sing N N 214 MSE CB HB2 sing N N 215 MSE CB HB3 sing N N 216 MSE CG SE sing N N 217 MSE CG HG2 sing N N 218 MSE CG HG3 sing N N 219 MSE SE CE sing N N 220 MSE CE HE1 sing N N 221 MSE CE HE2 sing N N 222 MSE CE HE3 sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 THR N CA sing N N 277 THR N H sing N N 278 THR N H2 sing N N 279 THR CA C sing N N 280 THR CA CB sing N N 281 THR CA HA sing N N 282 THR C O doub N N 283 THR C OXT sing N N 284 THR CB OG1 sing N N 285 THR CB CG2 sing N N 286 THR CB HB sing N N 287 THR OG1 HG1 sing N N 288 THR CG2 HG21 sing N N 289 THR CG2 HG22 sing N N 290 THR CG2 HG23 sing N N 291 THR OXT HXT sing N N 292 TRP N CA sing N N 293 TRP N H sing N N 294 TRP N H2 sing N N 295 TRP CA C sing N N 296 TRP CA CB sing N N 297 TRP CA HA sing N N 298 TRP C O doub N N 299 TRP C OXT sing N N 300 TRP CB CG sing N N 301 TRP CB HB2 sing N N 302 TRP CB HB3 sing N N 303 TRP CG CD1 doub Y N 304 TRP CG CD2 sing Y N 305 TRP CD1 NE1 sing Y N 306 TRP CD1 HD1 sing N N 307 TRP CD2 CE2 doub Y N 308 TRP CD2 CE3 sing Y N 309 TRP NE1 CE2 sing Y N 310 TRP NE1 HE1 sing N N 311 TRP CE2 CZ2 sing Y N 312 TRP CE3 CZ3 doub Y N 313 TRP CE3 HE3 sing N N 314 TRP CZ2 CH2 doub Y N 315 TRP CZ2 HZ2 sing N N 316 TRP CZ3 CH2 sing Y N 317 TRP CZ3 HZ3 sing N N 318 TRP CH2 HH2 sing N N 319 TRP OXT HXT sing N N 320 TYR N CA sing N N 321 TYR N H sing N N 322 TYR N H2 sing N N 323 TYR CA C sing N N 324 TYR CA CB sing N N 325 TYR CA HA sing N N 326 TYR C O doub N N 327 TYR C OXT sing N N 328 TYR CB CG sing N N 329 TYR CB HB2 sing N N 330 TYR CB HB3 sing N N 331 TYR CG CD1 doub Y N 332 TYR CG CD2 sing Y N 333 TYR CD1 CE1 sing Y N 334 TYR CD1 HD1 sing N N 335 TYR CD2 CE2 doub Y N 336 TYR CD2 HD2 sing N N 337 TYR CE1 CZ doub Y N 338 TYR CE1 HE1 sing N N 339 TYR CE2 CZ sing Y N 340 TYR CE2 HE2 sing N N 341 TYR CZ OH sing N N 342 TYR OH HH sing N N 343 TYR OXT HXT sing N N 344 VAL N CA sing N N 345 VAL N H sing N N 346 VAL N H2 sing N N 347 VAL CA C sing N N 348 VAL CA CB sing N N 349 VAL CA HA sing N N 350 VAL C O doub N N 351 VAL C OXT sing N N 352 VAL CB CG1 sing N N 353 VAL CB CG2 sing N N 354 VAL CB HB sing N N 355 VAL CG1 HG11 sing N N 356 VAL CG1 HG12 sing N N 357 VAL CG1 HG13 sing N N 358 VAL CG2 HG21 sing N N 359 VAL CG2 HG22 sing N N 360 VAL CG2 HG23 sing N N 361 VAL OXT HXT sing N N 362 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1CXU _pdbx_initial_refinement_model.details 'PDB ENTRY 1cxu' # _atom_sites.entry_id 3DLR _atom_sites.fract_transf_matrix[1][1] 0.019179 _atom_sites.fract_transf_matrix[1][2] 0.011073 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022146 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004170 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O SE # loop_