HEADER RNA BINDING PROTEIN 29-JUN-08 3DLU TITLE STRUCTURES OF SRP54 AND SRP19, THE TWO PROTEINS ASSEMBLING THE TITLE 2 RIBONUCLEIC CORE OF THE SIGNAL RECOGNITION PARTICLE FROM THE ARCHAEON TITLE 3 PYROCOCCUS FURIOSUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: SRP19; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 STRAIN: DSM3638; SOURCE 5 GENE: SRP19, PF1894; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PROTEIN-RNA, SIGNAL RECOGNITION PARTICLE, CYTOPLASM, KEYWDS 2 RIBONUCLEOPROTEIN, RNA-BINDING, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.F.EGEA,J.NAPETSCHNIG,P.WALTER,R.M.STROUD REVDAT 5 03-APR-24 3DLU 1 REMARK REVDAT 4 21-FEB-24 3DLU 1 REMARK SEQADV REVDAT 3 25-OCT-17 3DLU 1 REMARK REVDAT 2 24-FEB-09 3DLU 1 VERSN REVDAT 1 04-NOV-08 3DLU 0 JRNL AUTH P.F.EGEA,J.NAPETSCHNIG,P.WALTER,R.M.STROUD JRNL TITL STRUCTURES OF SRP54 AND SRP19, THE TWO PROTEINS THAT JRNL TITL 2 ORGANIZE THE RIBONUCLEIC CORE OF THE SIGNAL RECOGNITION JRNL TITL 3 PARTICLE FROM PYROCOCCUS FURIOSUS. JRNL REF PLOS ONE V. 3 E3528 2008 JRNL REFN ESSN 1932-6203 JRNL PMID 18953414 JRNL DOI 10.1371/JOURNAL.PONE.0003528 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 36384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.460 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0113 - 4.3118 0.01 0 160 0.1781 0.1863 REMARK 3 2 4.3118 - 3.4229 0.01 0 151 0.1551 0.1634 REMARK 3 3 3.4229 - 2.9903 0.01 0 142 0.1819 0.2184 REMARK 3 4 1.9394 - 1.8840 0.01 0 135 0.2144 0.2499 REMARK 3 5 1.8840 - 1.8344 0.01 0 130 0.2278 0.2878 REMARK 3 6 1.8344 - 1.8000 0.01 2143 122 0.2480 0.3134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 62.49 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.05540 REMARK 3 B22 (A**2) : -3.57840 REMARK 3 B33 (A**2) : 5.63380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.98110 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3051 REMARK 3 ANGLE : 1.030 4091 REMARK 3 CHIRALITY : 0.068 458 REMARK 3 PLANARITY : 0.005 517 REMARK 3 DIHEDRAL : 13.840 1214 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .92004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37519 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : 0.42700 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: EXPERIMENTAL PHASING REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2-1.3M NA MALONATE, 100MM NA REMARK 280 ACETATE, PH 5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.84950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 59 REMARK 465 LEU A 60 REMARK 465 SER A 61 REMARK 465 GLY A 62 REMARK 465 ILE A 63 REMARK 465 ASP A 64 REMARK 465 GLU A 65 REMARK 465 VAL A 104 REMARK 465 PRO A 105 REMARK 465 ARG A 106 REMARK 465 MET B 1 REMARK 465 ARG B 59 REMARK 465 LEU B 60 REMARK 465 SER B 61 REMARK 465 GLY B 62 REMARK 465 ILE B 63 REMARK 465 ASP B 64 REMARK 465 GLU B 65 REMARK 465 GLU B 66 REMARK 465 LEU B 67 REMARK 465 VAL B 104 REMARK 465 PRO B 105 REMARK 465 ARG B 106 REMARK 465 MET C 1 REMARK 465 PRO C 58 REMARK 465 ARG C 59 REMARK 465 LEU C 60 REMARK 465 SER C 61 REMARK 465 GLY C 62 REMARK 465 ILE C 63 REMARK 465 ASP C 64 REMARK 465 GLU C 65 REMARK 465 GLU C 66 REMARK 465 SER C 99 REMARK 465 ALA C 100 REMARK 465 GLY C 101 REMARK 465 THR C 102 REMARK 465 LEU C 103 REMARK 465 VAL C 104 REMARK 465 PRO C 105 REMARK 465 ARG C 106 REMARK 465 MET D 1 REMARK 465 ASN D 57 REMARK 465 PRO D 58 REMARK 465 ARG D 59 REMARK 465 LEU D 60 REMARK 465 SER D 61 REMARK 465 GLY D 62 REMARK 465 ILE D 63 REMARK 465 ASP D 64 REMARK 465 GLU D 65 REMARK 465 GLU D 66 REMARK 465 SER D 99 REMARK 465 ALA D 100 REMARK 465 GLY D 101 REMARK 465 THR D 102 REMARK 465 LEU D 103 REMARK 465 VAL D 104 REMARK 465 PRO D 105 REMARK 465 ARG D 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 GLU A 66 CG CD OE1 OE2 REMARK 470 ASN B 57 CG OD1 ND2 REMARK 470 PRO B 58 CG CD REMARK 470 ARG B 98 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 103 CG CD1 CD2 REMARK 470 LYS D 45 CE NZ REMARK 470 ARG D 68 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 98 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 58 N - CA - CB ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR D 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 119 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 122 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR D 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 124 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 125 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI C 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DLV RELATED DB: PDB REMARK 900 DIFFERENT CRYSTAL FORM OF SRP19 FROM PYROCOCCUS FURIOSUS REMARK 900 RELATED ID: 3DM5 RELATED DB: PDB REMARK 900 DIFFERENT CRYSTAL FORM DBREF 3DLU A 1 100 UNP Q8TZT9 SRP19_PYRFU 1 100 DBREF 3DLU B 1 100 UNP Q8TZT9 SRP19_PYRFU 1 100 DBREF 3DLU C 1 100 UNP Q8TZT9 SRP19_PYRFU 1 100 DBREF 3DLU D 1 100 UNP Q8TZT9 SRP19_PYRFU 1 100 SEQADV 3DLU GLY A 101 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU THR A 102 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU LEU A 103 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU VAL A 104 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU PRO A 105 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU ARG A 106 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU GLY B 101 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU THR B 102 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU LEU B 103 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU VAL B 104 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU PRO B 105 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU ARG B 106 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU GLY C 101 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU THR C 102 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU LEU C 103 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU VAL C 104 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU PRO C 105 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU ARG C 106 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU GLY D 101 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU THR D 102 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU LEU D 103 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU VAL D 104 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU PRO D 105 UNP Q8TZT9 EXPRESSION TAG SEQADV 3DLU ARG D 106 UNP Q8TZT9 EXPRESSION TAG SEQRES 1 A 106 MET GLY ARG PHE VAL VAL TRP PRO SER GLU LEU ASP SER SEQRES 2 A 106 ARG LEU SER ARG LYS TYR GLY ARG ILE VAL PRO ARG SER SEQRES 3 A 106 ILE ALA VAL GLU SER PRO ARG VAL GLU GLU ILE VAL ARG SEQRES 4 A 106 ALA ALA GLU GLU LEU LYS PHE LYS VAL ILE ARG VAL GLU SEQRES 5 A 106 GLU ASP LYS LEU ASN PRO ARG LEU SER GLY ILE ASP GLU SEQRES 6 A 106 GLU LEU ARG THR PHE GLY MET ILE VAL LEU GLU SER PRO SEQRES 7 A 106 TYR GLY LYS SER LYS SER LEU LYS LEU ILE ALA GLN LYS SEQRES 8 A 106 ILE ARG GLU PHE ARG ARG ARG SER ALA GLY THR LEU VAL SEQRES 9 A 106 PRO ARG SEQRES 1 B 106 MET GLY ARG PHE VAL VAL TRP PRO SER GLU LEU ASP SER SEQRES 2 B 106 ARG LEU SER ARG LYS TYR GLY ARG ILE VAL PRO ARG SER SEQRES 3 B 106 ILE ALA VAL GLU SER PRO ARG VAL GLU GLU ILE VAL ARG SEQRES 4 B 106 ALA ALA GLU GLU LEU LYS PHE LYS VAL ILE ARG VAL GLU SEQRES 5 B 106 GLU ASP LYS LEU ASN PRO ARG LEU SER GLY ILE ASP GLU SEQRES 6 B 106 GLU LEU ARG THR PHE GLY MET ILE VAL LEU GLU SER PRO SEQRES 7 B 106 TYR GLY LYS SER LYS SER LEU LYS LEU ILE ALA GLN LYS SEQRES 8 B 106 ILE ARG GLU PHE ARG ARG ARG SER ALA GLY THR LEU VAL SEQRES 9 B 106 PRO ARG SEQRES 1 C 106 MET GLY ARG PHE VAL VAL TRP PRO SER GLU LEU ASP SER SEQRES 2 C 106 ARG LEU SER ARG LYS TYR GLY ARG ILE VAL PRO ARG SER SEQRES 3 C 106 ILE ALA VAL GLU SER PRO ARG VAL GLU GLU ILE VAL ARG SEQRES 4 C 106 ALA ALA GLU GLU LEU LYS PHE LYS VAL ILE ARG VAL GLU SEQRES 5 C 106 GLU ASP LYS LEU ASN PRO ARG LEU SER GLY ILE ASP GLU SEQRES 6 C 106 GLU LEU ARG THR PHE GLY MET ILE VAL LEU GLU SER PRO SEQRES 7 C 106 TYR GLY LYS SER LYS SER LEU LYS LEU ILE ALA GLN LYS SEQRES 8 C 106 ILE ARG GLU PHE ARG ARG ARG SER ALA GLY THR LEU VAL SEQRES 9 C 106 PRO ARG SEQRES 1 D 106 MET GLY ARG PHE VAL VAL TRP PRO SER GLU LEU ASP SER SEQRES 2 D 106 ARG LEU SER ARG LYS TYR GLY ARG ILE VAL PRO ARG SER SEQRES 3 D 106 ILE ALA VAL GLU SER PRO ARG VAL GLU GLU ILE VAL ARG SEQRES 4 D 106 ALA ALA GLU GLU LEU LYS PHE LYS VAL ILE ARG VAL GLU SEQRES 5 D 106 GLU ASP LYS LEU ASN PRO ARG LEU SER GLY ILE ASP GLU SEQRES 6 D 106 GLU LEU ARG THR PHE GLY MET ILE VAL LEU GLU SER PRO SEQRES 7 D 106 TYR GLY LYS SER LYS SER LEU LYS LEU ILE ALA GLN LYS SEQRES 8 D 106 ILE ARG GLU PHE ARG ARG ARG SER ALA GLY THR LEU VAL SEQRES 9 D 106 PRO ARG HET BR A 107 1 HET BR A 108 1 HET BR A 109 1 HET BR A 110 1 HET BR A 111 1 HET BR A 112 1 HET BR A 113 1 HET BR A 114 1 HET BR A 115 1 HET BR A 116 1 HET BR A 117 1 HET BR A 118 1 HET BR A 119 1 HET BR A 120 1 HET BR A 121 1 HET BR A 122 1 HET BR A 123 1 HET BR A 124 1 HET BR A 125 1 HET BR A 126 1 HET BR B 107 1 HET BR B 108 1 HET BR B 109 1 HET BR B 110 1 HET BR C 107 1 HET BR C 108 1 HET BR C 109 1 HET BR C 110 1 HET BR C 111 1 HET BR C 112 1 HET BR C 113 1 HET BR C 114 1 HET MLI C1001 7 HET BR D 107 1 HET BR D 108 1 HET BR D 109 1 HET BR D 110 1 HET BR D 111 1 HET BR D 112 1 HET BR D 113 1 HETNAM BR BROMIDE ION HETNAM MLI MALONATE ION FORMUL 5 BR 39(BR 1-) FORMUL 37 MLI C3 H2 O4 2- FORMUL 45 HOH *217(H2 O) HELIX 1 1 TRP A 7 ASP A 12 5 6 HELIX 2 2 SER A 16 GLY A 20 5 5 HELIX 3 3 ARG A 33 LEU A 44 1 12 HELIX 4 4 GLY A 80 GLY A 101 1 22 HELIX 5 5 TRP B 7 ASP B 12 5 6 HELIX 6 6 SER B 16 GLY B 20 5 5 HELIX 7 7 ARG B 33 LEU B 44 1 12 HELIX 8 8 GLY B 80 GLY B 101 1 22 HELIX 9 9 TRP C 7 ASP C 12 5 6 HELIX 10 10 ARG C 33 LEU C 44 1 12 HELIX 11 11 GLY C 80 ARG C 98 1 19 HELIX 12 12 TRP D 7 ASP D 12 5 6 HELIX 13 13 SER D 16 GLY D 20 5 5 HELIX 14 14 ARG D 33 LEU D 44 1 12 HELIX 15 15 GLY D 80 ARG D 97 1 18 SHEET 1 A 6 ARG A 3 VAL A 6 0 SHEET 2 A 6 ARG A 68 GLU A 76 -1 O ILE A 73 N VAL A 6 SHEET 3 A 6 LYS A 47 LEU A 56 -1 N ASP A 54 O PHE A 70 SHEET 4 A 6 LYS D 47 LYS D 55 -1 O LYS D 55 N VAL A 51 SHEET 5 A 6 THR D 69 GLU D 76 -1 O PHE D 70 N ASP D 54 SHEET 6 A 6 ARG D 3 VAL D 6 -1 N VAL D 6 O ILE D 73 SHEET 1 B 6 ARG B 3 VAL B 6 0 SHEET 2 B 6 THR B 69 GLU B 76 -1 O ILE B 73 N VAL B 6 SHEET 3 B 6 LYS B 47 LEU B 56 -1 N ASP B 54 O PHE B 70 SHEET 4 B 6 LYS C 47 LEU C 56 -1 O LYS C 55 N VAL B 51 SHEET 5 B 6 ARG C 68 GLU C 76 -1 O PHE C 70 N ASP C 54 SHEET 6 B 6 ARG C 3 VAL C 6 -1 N VAL C 6 O ILE C 73 SITE 1 AC1 2 GLY C 80 LYS C 83 SITE 1 AC2 1 TRP A 7 SITE 1 AC3 1 TRP D 7 SITE 1 AC4 1 TRP C 7 SITE 1 AC5 1 GLU A 30 SITE 1 AC6 3 ARG C 3 PHE C 4 GLY D 20 SITE 1 AC7 2 PHE C 4 GLU D 10 SITE 1 AC8 4 ARG A 25 SER A 26 ALA A 28 ARG A 93 SITE 1 AC9 3 TRP A 7 GLU A 10 PHE B 4 SITE 1 BC1 2 ARG D 17 ARG D 21 SITE 1 BC3 4 GLY A 20 ILE A 22 ARG B 3 PHE B 4 SITE 1 BC4 3 LYS A 45 SER B 77 PRO B 78 SITE 1 BC5 2 LEU C 87 GLN C 90 SITE 1 BC6 1 ARG A 17 SITE 1 BC7 2 SER A 77 PRO A 78 SITE 1 BC8 1 SER A 9 SITE 1 BC9 2 SER A 9 ASP A 12 SITE 1 CC1 3 SER A 16 ARG A 17 LYS A 18 SITE 1 CC2 3 SER C 82 LYS C 83 LYS C 86 SITE 1 CC3 2 ARG A 25 SER A 26 SITE 1 CC4 3 SER B 26 ILE D 27 GLN D 90 SITE 1 CC5 2 ARG A 50 TRP B 7 SITE 1 CC6 1 SER A 26 SITE 1 CC7 1 ARG A 96 SITE 1 CC9 6 ARG C 93 ARG C 96 ARG C 97 SER D 13 SITE 2 CC9 6 ARG D 14 ARG D 25 CRYST1 44.074 79.699 60.548 90.00 107.65 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022689 0.000000 0.007218 0.00000 SCALE2 0.000000 0.012547 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017331 0.00000