data_3DM1 # _entry.id 3DM1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DM1 RCSB RCSB048206 WWPDB D_1000048206 # _pdbx_database_status.entry_id 3DM1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-06-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Amaya, M.F.' 1 'Ravichandran, M.' 2 'Loppnau, P.' 3 'Kozieradzki, I.' 4 'Edwards, A.M.' 5 'Arrowsmith, C.H.' 6 'Weigelt, J.' 7 'Bountra, C.' 8 'Bochkarev, A.' 9 'Min, J.' 10 'Ouyang, H.' 11 'Structural Genomics Consortium (SGC)' 12 # _citation.id primary _citation.title 'Structural basis of the chromodomain of Cbx3 bound to methylated peptides from histone h1 and G9a.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e35376 _citation.page_last e35376 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22514736 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0035376 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ruan, J.' 1 primary 'Ouyang, H.' 2 primary 'Amaya, M.F.' 3 primary 'Ravichandran, M.' 4 primary 'Loppnau, P.' 5 primary 'Min, J.' 6 primary 'Zang, J.' 7 # _cell.entry_id 3DM1 _cell.length_a 83.671 _cell.length_b 83.671 _cell.length_c 110.288 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DM1 _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromobox protein homolog 3' 6812.642 4 ? ? 'Chromo 1 domain: Residues 29-86' ? 2 polymer syn 'Histone-lysine N-methyltransferase, H3 lysine-9 specific 3' 1486.870 4 ? ? 'UNP residues 179-190' ? 3 water nat water 18.015 91 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Heterochromatin protein 1 homolog gamma, HP1 gamma, Modifier 2 protein, HECH' 2 ;Histone H3-K9 methyltransferase 3, H3-K9-HMTase 3, Euchromatic histone-lysine N-methyltransferase 2, HLA-B-associated transcript 8, Protein G9a, Lysine N-methyltransferase 1C ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no EFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEK EFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEK A,C,E,G ? 2 'polypeptide(L)' no yes 'KVHRAR(M3L)TMSKP' KVHRARKTMSKP B,D,F,H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PHE n 1 3 VAL n 1 4 VAL n 1 5 GLU n 1 6 LYS n 1 7 VAL n 1 8 LEU n 1 9 ASP n 1 10 ARG n 1 11 ARG n 1 12 VAL n 1 13 VAL n 1 14 ASN n 1 15 GLY n 1 16 LYS n 1 17 VAL n 1 18 GLU n 1 19 TYR n 1 20 PHE n 1 21 LEU n 1 22 LYS n 1 23 TRP n 1 24 LYS n 1 25 GLY n 1 26 PHE n 1 27 THR n 1 28 ASP n 1 29 ALA n 1 30 ASP n 1 31 ASN n 1 32 THR n 1 33 TRP n 1 34 GLU n 1 35 PRO n 1 36 GLU n 1 37 GLU n 1 38 ASN n 1 39 LEU n 1 40 ASP n 1 41 CYS n 1 42 PRO n 1 43 GLU n 1 44 LEU n 1 45 ILE n 1 46 GLU n 1 47 ALA n 1 48 PHE n 1 49 LEU n 1 50 ASN n 1 51 SER n 1 52 GLN n 1 53 LYS n 1 54 ALA n 1 55 GLY n 1 56 LYS n 1 57 GLU n 1 58 LYS n 2 1 LYS n 2 2 VAL n 2 3 HIS n 2 4 ARG n 2 5 ALA n 2 6 ARG n 2 7 M3L n 2 8 THR n 2 9 MET n 2 10 SER n 2 11 LYS n 2 12 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CBX3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;Synthetic peptide with the sequence matching the residues 179-190 of the human histone H3-K9 methyltransferase 3, EHMT2_HUMAN, UNP entry Q96KQ7 ; # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CBX3_HUMAN Q13185 1 EFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEK 29 ? 2 UNP EHMT2_HUMAN Q96KQ7 2 KVHRARKTMSKP 179 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3DM1 A 1 ? 58 ? Q13185 29 ? 86 ? 29 86 2 2 3DM1 B 1 ? 12 ? Q96KQ7 179 ? 190 ? 159 170 3 1 3DM1 C 1 ? 58 ? Q13185 29 ? 86 ? 29 86 4 2 3DM1 D 1 ? 12 ? Q96KQ7 179 ? 190 ? 159 170 5 1 3DM1 E 1 ? 58 ? Q13185 29 ? 86 ? 29 86 6 2 3DM1 F 1 ? 12 ? Q96KQ7 179 ? 190 ? 159 170 7 1 3DM1 G 1 ? 58 ? Q13185 29 ? 86 ? 29 86 8 2 3DM1 H 1 ? 12 ? Q96KQ7 179 ? 190 ? 159 170 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3DM1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.36 _exptl_crystal.density_percent_sol 63.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;1.5 microliter of the protein solution mixed with with 1.5 microliter of the reservoir solution containing 40% PEG 550 MME, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-06-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28268 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-E+ DW' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.28268 # _reflns.entry_id 3DM1 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 2.40 _reflns.number_obs 17856 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 24.63 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.52 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.836 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.38 _reflns_shell.pdbx_redundancy 8.80 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3DM1 _refine.ls_number_reflns_obs 17856 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.10 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.22190 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21951 _refine.ls_R_factor_R_free 0.26725 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 908 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.50 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 42.532 _refine.aniso_B[1][1] 0.12 _refine.aniso_B[2][2] 0.12 _refine.aniso_B[3][3] -0.18 _refine.aniso_B[1][2] 0.06 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.267 _refine.pdbx_overall_ESU_R_Free 0.231 _refine.overall_SU_ML 0.164 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.890 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2010 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 2101 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 39.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 2062 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.826 1.953 ? 2792 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.515 5.000 ? 238 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.057 24.643 ? 112 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.956 15.000 ? 342 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.559 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.118 0.200 ? 302 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1562 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.206 0.200 ? 766 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.312 0.200 ? 1357 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.278 0.200 ? 111 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.180 0.200 ? 30 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.286 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.215 1.500 ? 1251 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.072 2.000 ? 1952 'X-RAY DIFFRACTION' ? r_scbond_it 2.784 3.000 ? 941 'X-RAY DIFFRACTION' ? r_scangle_it 4.211 4.500 ? 839 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.47 _refine_ls_shell.number_reflns_R_work 1218 _refine_ls_shell.R_factor_R_work 0.270 _refine_ls_shell.percent_reflns_obs 99.62 _refine_ls_shell.R_factor_R_free 0.414 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 76 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DM1 _struct.title 'Crystal structure of the complex of human chromobox homolog 3 (CBX3) with peptide' _struct.pdbx_descriptor 'Chromobox protein homolog 3, Histone-lysine N-methyltransferase, H3 lysine-9 specific 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DM1 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;Chromobox homolog 3, Structural Genomics, Structural Genomics Consortium, SGC, Chromatin regulator, Nucleus, Phosphoprotein, Repressor, Transcription, Transcription regulation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 1 ? H N N 2 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 27 ? ASN A 31 ? THR A 55 ASN A 59 5 ? 5 HELX_P HELX_P2 2 GLU A 37 ? LEU A 39 ? GLU A 65 LEU A 67 5 ? 3 HELX_P HELX_P3 3 CYS A 41 ? SER A 51 ? CYS A 69 SER A 79 1 ? 11 HELX_P HELX_P4 4 THR C 27 ? ASN C 31 ? THR C 55 ASN C 59 5 ? 5 HELX_P HELX_P5 5 GLU C 37 ? LEU C 39 ? GLU C 65 LEU C 67 5 ? 3 HELX_P HELX_P6 6 CYS C 41 ? GLN C 52 ? CYS C 69 GLN C 80 1 ? 12 HELX_P HELX_P7 7 GLU E 37 ? LEU E 39 ? GLU E 65 LEU E 67 5 ? 3 HELX_P HELX_P8 8 CYS E 41 ? SER E 51 ? CYS E 69 SER E 79 1 ? 11 HELX_P HELX_P9 9 THR G 27 ? ASN G 31 ? THR G 55 ASN G 59 5 ? 5 HELX_P HELX_P10 10 GLU G 37 ? LEU G 39 ? GLU G 65 LEU G 67 5 ? 3 HELX_P HELX_P11 11 CYS G 41 ? SER G 51 ? CYS G 69 SER G 79 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 41 SG ? ? ? 1_555 C CYS 41 SG ? ? A CYS 69 C CYS 69 1_555 ? ? ? ? ? ? ? 2.142 ? disulf2 disulf ? ? E CYS 41 SG ? ? ? 1_555 G CYS 41 SG ? ? E CYS 69 G CYS 69 1_555 ? ? ? ? ? ? ? 2.125 ? covale1 covale ? ? B ARG 6 C ? ? ? 1_555 B M3L 7 N ? ? B ARG 164 B M3L 165 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? B M3L 7 C ? ? ? 1_555 B THR 8 N ? ? B M3L 165 B THR 166 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? D ARG 6 C ? ? ? 1_555 D M3L 7 N ? ? D ARG 164 D M3L 165 1_555 ? ? ? ? ? ? ? 1.334 ? covale4 covale ? ? D M3L 7 C ? ? ? 1_555 D THR 8 N ? ? D M3L 165 D THR 166 1_555 ? ? ? ? ? ? ? 1.342 ? covale5 covale ? ? F ARG 6 C ? ? ? 1_555 F M3L 7 N ? ? F ARG 164 F M3L 165 1_555 ? ? ? ? ? ? ? 1.323 ? covale6 covale ? ? F M3L 7 C ? ? ? 1_555 F THR 8 N ? ? F M3L 165 F THR 166 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? H ARG 6 C ? ? ? 1_555 H M3L 7 N ? ? H ARG 164 H M3L 165 1_555 ? ? ? ? ? ? ? 1.326 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 32 ? PRO A 35 ? THR A 60 PRO A 63 A 2 LYS A 16 ? TRP A 23 ? LYS A 44 TRP A 51 A 3 PHE A 2 ? VAL A 13 ? PHE A 30 VAL A 41 A 4 ARG B 4 ? ALA B 5 ? ARG B 162 ALA B 163 B 1 VAL C 4 ? VAL C 13 ? VAL C 32 VAL C 41 B 2 LYS C 16 ? TRP C 23 ? LYS C 44 TRP C 51 B 3 THR C 32 ? PRO C 35 ? THR C 60 PRO C 63 C 1 ASN E 31 ? PRO E 35 ? ASN E 59 PRO E 63 C 2 VAL E 17 ? TRP E 23 ? VAL E 45 TRP E 51 C 3 PHE E 2 ? VAL E 12 ? PHE E 30 VAL E 40 C 4 ARG F 4 ? ALA F 5 ? ARG F 162 ALA F 163 D 1 THR G 32 ? PRO G 35 ? THR G 60 PRO G 63 D 2 VAL G 17 ? TRP G 23 ? VAL G 45 TRP G 51 D 3 PHE G 2 ? VAL G 12 ? PHE G 30 VAL G 40 D 4 ARG H 4 ? ALA H 5 ? ARG H 162 ALA H 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 32 ? O THR A 60 N LEU A 21 ? N LEU A 49 A 2 3 O PHE A 20 ? O PHE A 48 N LEU A 8 ? N LEU A 36 A 3 4 N PHE A 2 ? N PHE A 30 O ALA B 5 ? O ALA B 163 B 1 2 N LEU C 8 ? N LEU C 36 O PHE C 20 ? O PHE C 48 B 2 3 N TYR C 19 ? N TYR C 47 O GLU C 34 ? O GLU C 62 C 1 2 O GLU E 34 ? O GLU E 62 N TYR E 19 ? N TYR E 47 C 2 3 O LYS E 22 ? O LYS E 50 N GLU E 5 ? N GLU E 33 C 3 4 N PHE E 2 ? N PHE E 30 O ALA F 5 ? O ALA F 163 D 1 2 O GLU G 34 ? O GLU G 62 N TYR G 19 ? N TYR G 47 D 2 3 O LYS G 22 ? O LYS G 50 N GLU G 5 ? N GLU G 33 D 3 4 N PHE G 2 ? N PHE G 30 O ALA H 5 ? O ALA H 163 # _atom_sites.entry_id 3DM1 _atom_sites.fract_transf_matrix[1][1] 0.011952 _atom_sites.fract_transf_matrix[1][2] 0.006900 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013800 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009067 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 29 29 GLU GLU A . n A 1 2 PHE 2 30 30 PHE PHE A . n A 1 3 VAL 3 31 31 VAL VAL A . n A 1 4 VAL 4 32 32 VAL VAL A . n A 1 5 GLU 5 33 33 GLU GLU A . n A 1 6 LYS 6 34 34 LYS LYS A . n A 1 7 VAL 7 35 35 VAL VAL A . n A 1 8 LEU 8 36 36 LEU LEU A . n A 1 9 ASP 9 37 37 ASP ASP A . n A 1 10 ARG 10 38 38 ARG ARG A . n A 1 11 ARG 11 39 39 ARG ARG A . n A 1 12 VAL 12 40 40 VAL VAL A . n A 1 13 VAL 13 41 41 VAL VAL A . n A 1 14 ASN 14 42 42 ASN ASN A . n A 1 15 GLY 15 43 43 GLY GLY A . n A 1 16 LYS 16 44 44 LYS LYS A . n A 1 17 VAL 17 45 45 VAL VAL A . n A 1 18 GLU 18 46 46 GLU GLU A . n A 1 19 TYR 19 47 47 TYR TYR A . n A 1 20 PHE 20 48 48 PHE PHE A . n A 1 21 LEU 21 49 49 LEU LEU A . n A 1 22 LYS 22 50 50 LYS LYS A . n A 1 23 TRP 23 51 51 TRP TRP A . n A 1 24 LYS 24 52 52 LYS LYS A . n A 1 25 GLY 25 53 53 GLY GLY A . n A 1 26 PHE 26 54 54 PHE PHE A . n A 1 27 THR 27 55 55 THR THR A . n A 1 28 ASP 28 56 56 ASP ASP A . n A 1 29 ALA 29 57 57 ALA ALA A . n A 1 30 ASP 30 58 58 ASP ASP A . n A 1 31 ASN 31 59 59 ASN ASN A . n A 1 32 THR 32 60 60 THR THR A . n A 1 33 TRP 33 61 61 TRP TRP A . n A 1 34 GLU 34 62 62 GLU GLU A . n A 1 35 PRO 35 63 63 PRO PRO A . n A 1 36 GLU 36 64 64 GLU GLU A . n A 1 37 GLU 37 65 65 GLU GLU A . n A 1 38 ASN 38 66 66 ASN ASN A . n A 1 39 LEU 39 67 67 LEU LEU A . n A 1 40 ASP 40 68 68 ASP ASP A . n A 1 41 CYS 41 69 69 CYS CYS A . n A 1 42 PRO 42 70 70 PRO PRO A . n A 1 43 GLU 43 71 71 GLU GLU A . n A 1 44 LEU 44 72 72 LEU LEU A . n A 1 45 ILE 45 73 73 ILE ILE A . n A 1 46 GLU 46 74 74 GLU GLU A . n A 1 47 ALA 47 75 75 ALA ALA A . n A 1 48 PHE 48 76 76 PHE PHE A . n A 1 49 LEU 49 77 77 LEU LEU A . n A 1 50 ASN 50 78 78 ASN ASN A . n A 1 51 SER 51 79 79 SER SER A . n A 1 52 GLN 52 80 80 GLN GLN A . n A 1 53 LYS 53 81 ? ? ? A . n A 1 54 ALA 54 82 ? ? ? A . n A 1 55 GLY 55 83 ? ? ? A . n A 1 56 LYS 56 84 ? ? ? A . n A 1 57 GLU 57 85 ? ? ? A . n A 1 58 LYS 58 86 ? ? ? A . n B 2 1 LYS 1 159 159 LYS LYS B . n B 2 2 VAL 2 160 160 VAL VAL B . n B 2 3 HIS 3 161 161 HIS HIS B . n B 2 4 ARG 4 162 162 ARG ARG B . n B 2 5 ALA 5 163 163 ALA ALA B . n B 2 6 ARG 6 164 164 ARG ARG B . n B 2 7 M3L 7 165 165 M3L M3L B . n B 2 8 THR 8 166 166 THR THR B . n B 2 9 MET 9 167 ? ? ? B . n B 2 10 SER 10 168 ? ? ? B . n B 2 11 LYS 11 169 ? ? ? B . n B 2 12 PRO 12 170 ? ? ? B . n C 1 1 GLU 1 29 29 GLU GLU C . n C 1 2 PHE 2 30 30 PHE PHE C . n C 1 3 VAL 3 31 31 VAL VAL C . n C 1 4 VAL 4 32 32 VAL VAL C . n C 1 5 GLU 5 33 33 GLU GLU C . n C 1 6 LYS 6 34 34 LYS LYS C . n C 1 7 VAL 7 35 35 VAL VAL C . n C 1 8 LEU 8 36 36 LEU LEU C . n C 1 9 ASP 9 37 37 ASP ASP C . n C 1 10 ARG 10 38 38 ARG ARG C . n C 1 11 ARG 11 39 39 ARG ARG C . n C 1 12 VAL 12 40 40 VAL VAL C . n C 1 13 VAL 13 41 41 VAL VAL C . n C 1 14 ASN 14 42 42 ASN ASN C . n C 1 15 GLY 15 43 43 GLY GLY C . n C 1 16 LYS 16 44 44 LYS LYS C . n C 1 17 VAL 17 45 45 VAL VAL C . n C 1 18 GLU 18 46 46 GLU GLU C . n C 1 19 TYR 19 47 47 TYR TYR C . n C 1 20 PHE 20 48 48 PHE PHE C . n C 1 21 LEU 21 49 49 LEU LEU C . n C 1 22 LYS 22 50 50 LYS LYS C . n C 1 23 TRP 23 51 51 TRP TRP C . n C 1 24 LYS 24 52 52 LYS LYS C . n C 1 25 GLY 25 53 53 GLY GLY C . n C 1 26 PHE 26 54 54 PHE PHE C . n C 1 27 THR 27 55 55 THR THR C . n C 1 28 ASP 28 56 56 ASP ASP C . n C 1 29 ALA 29 57 57 ALA ALA C . n C 1 30 ASP 30 58 58 ASP ASP C . n C 1 31 ASN 31 59 59 ASN ASN C . n C 1 32 THR 32 60 60 THR THR C . n C 1 33 TRP 33 61 61 TRP TRP C . n C 1 34 GLU 34 62 62 GLU GLU C . n C 1 35 PRO 35 63 63 PRO PRO C . n C 1 36 GLU 36 64 64 GLU GLU C . n C 1 37 GLU 37 65 65 GLU GLU C . n C 1 38 ASN 38 66 66 ASN ASN C . n C 1 39 LEU 39 67 67 LEU LEU C . n C 1 40 ASP 40 68 68 ASP ASP C . n C 1 41 CYS 41 69 69 CYS CYS C . n C 1 42 PRO 42 70 70 PRO PRO C . n C 1 43 GLU 43 71 71 GLU GLU C . n C 1 44 LEU 44 72 72 LEU LEU C . n C 1 45 ILE 45 73 73 ILE ILE C . n C 1 46 GLU 46 74 74 GLU GLU C . n C 1 47 ALA 47 75 75 ALA ALA C . n C 1 48 PHE 48 76 76 PHE PHE C . n C 1 49 LEU 49 77 77 LEU LEU C . n C 1 50 ASN 50 78 78 ASN ASN C . n C 1 51 SER 51 79 79 SER SER C . n C 1 52 GLN 52 80 80 GLN GLN C . n C 1 53 LYS 53 81 ? ? ? C . n C 1 54 ALA 54 82 ? ? ? C . n C 1 55 GLY 55 83 ? ? ? C . n C 1 56 LYS 56 84 ? ? ? C . n C 1 57 GLU 57 85 ? ? ? C . n C 1 58 LYS 58 86 ? ? ? C . n D 2 1 LYS 1 159 ? ? ? D . n D 2 2 VAL 2 160 160 VAL VAL D . n D 2 3 HIS 3 161 161 HIS HIS D . n D 2 4 ARG 4 162 162 ARG ARG D . n D 2 5 ALA 5 163 163 ALA ALA D . n D 2 6 ARG 6 164 164 ARG ARG D . n D 2 7 M3L 7 165 165 M3L M3L D . n D 2 8 THR 8 166 166 THR THR D . n D 2 9 MET 9 167 167 MET MET D . n D 2 10 SER 10 168 168 SER SER D . n D 2 11 LYS 11 169 169 LYS ALA D . n D 2 12 PRO 12 170 ? ? ? D . n E 1 1 GLU 1 29 29 GLU GLU E . n E 1 2 PHE 2 30 30 PHE PHE E . n E 1 3 VAL 3 31 31 VAL VAL E . n E 1 4 VAL 4 32 32 VAL VAL E . n E 1 5 GLU 5 33 33 GLU GLU E . n E 1 6 LYS 6 34 34 LYS LYS E . n E 1 7 VAL 7 35 35 VAL VAL E . n E 1 8 LEU 8 36 36 LEU LEU E . n E 1 9 ASP 9 37 37 ASP ASP E . n E 1 10 ARG 10 38 38 ARG ARG E . n E 1 11 ARG 11 39 39 ARG ARG E . n E 1 12 VAL 12 40 40 VAL VAL E . n E 1 13 VAL 13 41 41 VAL VAL E . n E 1 14 ASN 14 42 42 ASN ASN E . n E 1 15 GLY 15 43 43 GLY GLY E . n E 1 16 LYS 16 44 44 LYS LYS E . n E 1 17 VAL 17 45 45 VAL VAL E . n E 1 18 GLU 18 46 46 GLU GLU E . n E 1 19 TYR 19 47 47 TYR TYR E . n E 1 20 PHE 20 48 48 PHE PHE E . n E 1 21 LEU 21 49 49 LEU LEU E . n E 1 22 LYS 22 50 50 LYS LYS E . n E 1 23 TRP 23 51 51 TRP TRP E . n E 1 24 LYS 24 52 52 LYS LYS E . n E 1 25 GLY 25 53 53 GLY GLY E . n E 1 26 PHE 26 54 54 PHE PHE E . n E 1 27 THR 27 55 55 THR THR E . n E 1 28 ASP 28 56 56 ASP ASP E . n E 1 29 ALA 29 57 57 ALA ALA E . n E 1 30 ASP 30 58 58 ASP ASP E . n E 1 31 ASN 31 59 59 ASN ASN E . n E 1 32 THR 32 60 60 THR THR E . n E 1 33 TRP 33 61 61 TRP TRP E . n E 1 34 GLU 34 62 62 GLU GLU E . n E 1 35 PRO 35 63 63 PRO PRO E . n E 1 36 GLU 36 64 64 GLU GLU E . n E 1 37 GLU 37 65 65 GLU GLU E . n E 1 38 ASN 38 66 66 ASN ASN E . n E 1 39 LEU 39 67 67 LEU LEU E . n E 1 40 ASP 40 68 68 ASP ASP E . n E 1 41 CYS 41 69 69 CYS CYS E . n E 1 42 PRO 42 70 70 PRO PRO E . n E 1 43 GLU 43 71 71 GLU GLU E . n E 1 44 LEU 44 72 72 LEU LEU E . n E 1 45 ILE 45 73 73 ILE ILE E . n E 1 46 GLU 46 74 74 GLU GLU E . n E 1 47 ALA 47 75 75 ALA ALA E . n E 1 48 PHE 48 76 76 PHE PHE E . n E 1 49 LEU 49 77 77 LEU LEU E . n E 1 50 ASN 50 78 78 ASN ASN E . n E 1 51 SER 51 79 79 SER SER E . n E 1 52 GLN 52 80 80 GLN GLN E . n E 1 53 LYS 53 81 81 LYS LYS E . n E 1 54 ALA 54 82 ? ? ? E . n E 1 55 GLY 55 83 ? ? ? E . n E 1 56 LYS 56 84 ? ? ? E . n E 1 57 GLU 57 85 ? ? ? E . n E 1 58 LYS 58 86 ? ? ? E . n F 2 1 LYS 1 159 159 LYS ALA F . n F 2 2 VAL 2 160 160 VAL ALA F . n F 2 3 HIS 3 161 161 HIS HIS F . n F 2 4 ARG 4 162 162 ARG ARG F . n F 2 5 ALA 5 163 163 ALA ALA F . n F 2 6 ARG 6 164 164 ARG ARG F . n F 2 7 M3L 7 165 165 M3L M3L F . n F 2 8 THR 8 166 166 THR THR F . n F 2 9 MET 9 167 167 MET MET F . n F 2 10 SER 10 168 ? ? ? F . n F 2 11 LYS 11 169 ? ? ? F . n F 2 12 PRO 12 170 ? ? ? F . n G 1 1 GLU 1 29 29 GLU GLU G . n G 1 2 PHE 2 30 30 PHE PHE G . n G 1 3 VAL 3 31 31 VAL VAL G . n G 1 4 VAL 4 32 32 VAL VAL G . n G 1 5 GLU 5 33 33 GLU GLU G . n G 1 6 LYS 6 34 34 LYS LYS G . n G 1 7 VAL 7 35 35 VAL VAL G . n G 1 8 LEU 8 36 36 LEU LEU G . n G 1 9 ASP 9 37 37 ASP ASP G . n G 1 10 ARG 10 38 38 ARG ARG G . n G 1 11 ARG 11 39 39 ARG ARG G . n G 1 12 VAL 12 40 40 VAL VAL G . n G 1 13 VAL 13 41 41 VAL VAL G . n G 1 14 ASN 14 42 42 ASN ASN G . n G 1 15 GLY 15 43 43 GLY GLY G . n G 1 16 LYS 16 44 44 LYS LYS G . n G 1 17 VAL 17 45 45 VAL VAL G . n G 1 18 GLU 18 46 46 GLU GLU G . n G 1 19 TYR 19 47 47 TYR TYR G . n G 1 20 PHE 20 48 48 PHE PHE G . n G 1 21 LEU 21 49 49 LEU LEU G . n G 1 22 LYS 22 50 50 LYS LYS G . n G 1 23 TRP 23 51 51 TRP TRP G . n G 1 24 LYS 24 52 52 LYS LYS G . n G 1 25 GLY 25 53 53 GLY GLY G . n G 1 26 PHE 26 54 54 PHE PHE G . n G 1 27 THR 27 55 55 THR THR G . n G 1 28 ASP 28 56 56 ASP ASP G . n G 1 29 ALA 29 57 57 ALA ALA G . n G 1 30 ASP 30 58 58 ASP ASP G . n G 1 31 ASN 31 59 59 ASN ASN G . n G 1 32 THR 32 60 60 THR THR G . n G 1 33 TRP 33 61 61 TRP TRP G . n G 1 34 GLU 34 62 62 GLU GLU G . n G 1 35 PRO 35 63 63 PRO PRO G . n G 1 36 GLU 36 64 64 GLU GLU G . n G 1 37 GLU 37 65 65 GLU GLU G . n G 1 38 ASN 38 66 66 ASN ASN G . n G 1 39 LEU 39 67 67 LEU LEU G . n G 1 40 ASP 40 68 68 ASP ASP G . n G 1 41 CYS 41 69 69 CYS CYS G . n G 1 42 PRO 42 70 70 PRO PRO G . n G 1 43 GLU 43 71 71 GLU GLU G . n G 1 44 LEU 44 72 72 LEU LEU G . n G 1 45 ILE 45 73 73 ILE ILE G . n G 1 46 GLU 46 74 74 GLU GLU G . n G 1 47 ALA 47 75 75 ALA ALA G . n G 1 48 PHE 48 76 76 PHE PHE G . n G 1 49 LEU 49 77 77 LEU LEU G . n G 1 50 ASN 50 78 78 ASN ASN G . n G 1 51 SER 51 79 79 SER SER G . n G 1 52 GLN 52 80 80 GLN GLN G . n G 1 53 LYS 53 81 81 LYS LYS G . n G 1 54 ALA 54 82 ? ? ? G . n G 1 55 GLY 55 83 ? ? ? G . n G 1 56 LYS 56 84 ? ? ? G . n G 1 57 GLU 57 85 ? ? ? G . n G 1 58 LYS 58 86 ? ? ? G . n H 2 1 LYS 1 159 159 LYS LYS H . n H 2 2 VAL 2 160 160 VAL VAL H . n H 2 3 HIS 3 161 161 HIS HIS H . n H 2 4 ARG 4 162 162 ARG ARG H . n H 2 5 ALA 5 163 163 ALA ALA H . n H 2 6 ARG 6 164 164 ARG ARG H . n H 2 7 M3L 7 165 165 M3L M3L H . n H 2 8 THR 8 166 ? ? ? H . n H 2 9 MET 9 167 ? ? ? H . n H 2 10 SER 10 168 ? ? ? H . n H 2 11 LYS 11 169 ? ? ? H . n H 2 12 PRO 12 170 ? ? ? H . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 HOH 1 87 6 HOH HOH A . I 3 HOH 2 88 8 HOH HOH A . I 3 HOH 3 89 13 HOH HOH A . I 3 HOH 4 90 22 HOH HOH A . I 3 HOH 5 91 35 HOH HOH A . I 3 HOH 6 92 40 HOH HOH A . I 3 HOH 7 93 42 HOH HOH A . I 3 HOH 8 94 43 HOH HOH A . I 3 HOH 9 95 46 HOH HOH A . I 3 HOH 10 96 61 HOH HOH A . I 3 HOH 11 97 64 HOH HOH A . I 3 HOH 12 98 70 HOH HOH A . I 3 HOH 13 99 72 HOH HOH A . I 3 HOH 14 100 81 HOH HOH A . I 3 HOH 15 101 91 HOH HOH A . I 3 HOH 16 102 93 HOH HOH A . I 3 HOH 17 103 101 HOH HOH A . I 3 HOH 18 104 105 HOH HOH A . I 3 HOH 19 105 114 HOH HOH A . I 3 HOH 20 107 127 HOH HOH A . I 3 HOH 21 108 133 HOH HOH A . I 3 HOH 22 109 136 HOH HOH A . I 3 HOH 23 110 143 HOH HOH A . J 3 HOH 1 106 119 HOH HOH C . J 3 HOH 2 107 2 HOH HOH C . J 3 HOH 3 108 3 HOH HOH C . J 3 HOH 4 109 7 HOH HOH C . J 3 HOH 5 110 9 HOH HOH C . J 3 HOH 6 111 10 HOH HOH C . J 3 HOH 7 112 11 HOH HOH C . J 3 HOH 8 113 17 HOH HOH C . J 3 HOH 9 114 19 HOH HOH C . J 3 HOH 10 115 23 HOH HOH C . J 3 HOH 11 116 24 HOH HOH C . J 3 HOH 12 117 30 HOH HOH C . J 3 HOH 13 118 31 HOH HOH C . J 3 HOH 14 119 38 HOH HOH C . J 3 HOH 15 120 45 HOH HOH C . J 3 HOH 16 121 48 HOH HOH C . J 3 HOH 17 122 50 HOH HOH C . J 3 HOH 18 123 52 HOH HOH C . J 3 HOH 19 124 54 HOH HOH C . J 3 HOH 20 125 66 HOH HOH C . J 3 HOH 21 126 69 HOH HOH C . J 3 HOH 22 127 77 HOH HOH C . J 3 HOH 23 128 88 HOH HOH C . J 3 HOH 24 129 103 HOH HOH C . J 3 HOH 25 130 108 HOH HOH C . J 3 HOH 26 131 113 HOH HOH C . J 3 HOH 27 132 118 HOH HOH C . J 3 HOH 28 133 125 HOH HOH C . J 3 HOH 29 134 128 HOH HOH C . J 3 HOH 30 135 138 HOH HOH C . J 3 HOH 31 136 74 HOH HOH C . K 3 HOH 1 12 12 HOH HOH D . K 3 HOH 2 27 27 HOH HOH D . K 3 HOH 3 34 34 HOH HOH D . K 3 HOH 4 126 126 HOH HOH D . K 3 HOH 5 149 149 HOH HOH D . L 3 HOH 1 87 4 HOH HOH E . L 3 HOH 2 88 15 HOH HOH E . L 3 HOH 3 89 18 HOH HOH E . L 3 HOH 4 90 25 HOH HOH E . L 3 HOH 5 91 36 HOH HOH E . L 3 HOH 6 92 39 HOH HOH E . L 3 HOH 7 93 41 HOH HOH E . L 3 HOH 8 94 60 HOH HOH E . L 3 HOH 9 95 62 HOH HOH E . L 3 HOH 10 97 80 HOH HOH E . L 3 HOH 11 98 100 HOH HOH E . L 3 HOH 12 99 107 HOH HOH E . L 3 HOH 13 100 115 HOH HOH E . L 3 HOH 14 101 134 HOH HOH E . L 3 HOH 15 102 137 HOH HOH E . L 3 HOH 16 103 145 HOH HOH E . M 3 HOH 1 33 33 HOH HOH F . N 3 HOH 1 87 14 HOH HOH G . N 3 HOH 2 88 20 HOH HOH G . N 3 HOH 3 89 26 HOH HOH G . N 3 HOH 4 90 29 HOH HOH G . N 3 HOH 5 91 32 HOH HOH G . N 3 HOH 6 92 47 HOH HOH G . N 3 HOH 7 93 71 HOH HOH G . N 3 HOH 8 94 90 HOH HOH G . N 3 HOH 9 95 97 HOH HOH G . N 3 HOH 10 96 110 HOH HOH G . N 3 HOH 11 97 148 HOH HOH G . N 3 HOH 12 98 153 HOH HOH G . N 3 HOH 13 99 154 HOH HOH G . O 3 HOH 1 84 84 HOH HOH H . O 3 HOH 2 95 95 HOH HOH H . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B M3L 7 B M3L 165 ? LYS N-TRIMETHYLLYSINE 2 D M3L 7 D M3L 165 ? LYS N-TRIMETHYLLYSINE 3 F M3L 7 F M3L 165 ? LYS N-TRIMETHYLLYSINE 4 H M3L 7 H M3L 165 ? LYS N-TRIMETHYLLYSINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 4 author_and_software_defined_assembly PISA dimeric 2 5 software_defined_assembly PISA octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I 2 1 C,D,J,K 3 1 E,F,L,M 4 1 G,H,N,O 5 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1160 ? 1 MORE -6.4 ? 1 'SSA (A^2)' 4180 ? 2 'ABSA (A^2)' 1040 ? 2 MORE -8.6 ? 2 'SSA (A^2)' 4360 ? 3 'ABSA (A^2)' 1100 ? 3 MORE -7.7 ? 3 'SSA (A^2)' 4280 ? 4 'ABSA (A^2)' 1120 ? 4 MORE -7.0 ? 4 'SSA (A^2)' 4350 ? 5 'ABSA (A^2)' 8610 ? 5 MORE -62.1 ? 5 'SSA (A^2)' 12970 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-01-23 4 'Structure model' 1 3 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 2 DENZO . ? ? ? ? 'data reduction' ? ? ? 3 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 4 SHELXD . ? ? ? ? phasing ? ? ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C HOH 108 ? ? O G HOH 99 ? ? 1.77 2 1 O G HOH 87 ? ? O G HOH 99 ? ? 1.90 3 1 O A GLN 80 ? ? O A HOH 103 ? ? 2.01 4 1 NH2 C ARG 38 ? B OD1 C ASN 78 ? ? 2.15 5 1 N A GLU 29 ? ? O A HOH 109 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 110 ? ? 1_555 O C HOH 107 ? ? 4_565 2.00 2 1 O A HOH 105 ? ? 1_555 O C HOH 106 ? ? 4_565 2.18 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 F _pdbx_validate_rmsd_bond.auth_comp_id_1 MET _pdbx_validate_rmsd_bond.auth_seq_id_1 167 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SD _pdbx_validate_rmsd_bond.auth_asym_id_2 F _pdbx_validate_rmsd_bond.auth_comp_id_2 MET _pdbx_validate_rmsd_bond.auth_seq_id_2 167 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.531 _pdbx_validate_rmsd_bond.bond_target_value 1.807 _pdbx_validate_rmsd_bond.bond_deviation -0.276 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.026 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 42 ? ? 41.49 74.45 2 1 ASN E 42 ? ? -158.30 62.36 3 1 ASP E 58 ? ? -104.45 67.02 4 1 CYS G 69 ? ? -157.87 66.33 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASN 42 ? CG ? A ASN 14 CG 2 1 Y 1 A ASN 42 ? OD1 ? A ASN 14 OD1 3 1 Y 1 A ASN 42 ? ND2 ? A ASN 14 ND2 4 1 Y 1 A LYS 44 ? CG ? A LYS 16 CG 5 1 Y 1 A LYS 44 ? CD ? A LYS 16 CD 6 1 Y 1 A LYS 44 ? CE ? A LYS 16 CE 7 1 Y 1 A LYS 44 ? NZ ? A LYS 16 NZ 8 1 Y 1 B ARG 164 ? CG ? B ARG 6 CG 9 1 Y 1 B ARG 164 ? CD ? B ARG 6 CD 10 1 Y 1 B ARG 164 ? NE ? B ARG 6 NE 11 1 Y 1 B ARG 164 ? CZ ? B ARG 6 CZ 12 1 Y 1 B ARG 164 ? NH1 ? B ARG 6 NH1 13 1 Y 1 B ARG 164 ? NH2 ? B ARG 6 NH2 14 1 Y 1 D ARG 164 ? CG ? D ARG 6 CG 15 1 Y 1 D ARG 164 ? CD ? D ARG 6 CD 16 1 Y 1 D ARG 164 ? NE ? D ARG 6 NE 17 1 Y 1 D ARG 164 ? CZ ? D ARG 6 CZ 18 1 Y 1 D ARG 164 ? NH1 ? D ARG 6 NH1 19 1 Y 1 D ARG 164 ? NH2 ? D ARG 6 NH2 20 1 Y 1 D LYS 169 ? CG ? D LYS 11 CG 21 1 Y 1 D LYS 169 ? CD ? D LYS 11 CD 22 1 Y 1 D LYS 169 ? CE ? D LYS 11 CE 23 1 Y 1 D LYS 169 ? NZ ? D LYS 11 NZ 24 1 Y 1 E VAL 41 ? CG1 ? E VAL 13 CG1 25 1 Y 1 E VAL 41 ? CG2 ? E VAL 13 CG2 26 1 Y 1 E ASN 42 ? CG ? E ASN 14 CG 27 1 Y 1 E ASN 42 ? OD1 ? E ASN 14 OD1 28 1 Y 1 E ASN 42 ? ND2 ? E ASN 14 ND2 29 1 Y 1 E LYS 44 ? CG ? E LYS 16 CG 30 1 Y 1 E LYS 44 ? CD ? E LYS 16 CD 31 1 Y 1 E LYS 44 ? CE ? E LYS 16 CE 32 1 Y 1 E LYS 44 ? NZ ? E LYS 16 NZ 33 1 Y 1 E LYS 50 ? CD ? E LYS 22 CD 34 1 Y 1 E LYS 50 ? CE ? E LYS 22 CE 35 1 Y 1 E LYS 50 ? NZ ? E LYS 22 NZ 36 1 Y 1 E LYS 52 ? CE ? E LYS 24 CE 37 1 Y 1 E LYS 52 ? NZ ? E LYS 24 NZ 38 1 Y 1 E LYS 81 ? CE ? E LYS 53 CE 39 1 Y 1 E LYS 81 ? NZ ? E LYS 53 NZ 40 1 Y 1 F LYS 159 ? CG ? F LYS 1 CG 41 1 Y 1 F LYS 159 ? CD ? F LYS 1 CD 42 1 Y 1 F LYS 159 ? CE ? F LYS 1 CE 43 1 Y 1 F LYS 159 ? NZ ? F LYS 1 NZ 44 1 Y 1 F VAL 160 ? CG1 ? F VAL 2 CG1 45 1 Y 1 F VAL 160 ? CG2 ? F VAL 2 CG2 46 1 Y 1 F ARG 164 ? CG ? F ARG 6 CG 47 1 Y 1 F ARG 164 ? CD ? F ARG 6 CD 48 1 Y 1 F ARG 164 ? NE ? F ARG 6 NE 49 1 Y 1 F ARG 164 ? CZ ? F ARG 6 CZ 50 1 Y 1 F ARG 164 ? NH1 ? F ARG 6 NH1 51 1 Y 1 F ARG 164 ? NH2 ? F ARG 6 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 81 ? A LYS 53 2 1 Y 1 A ALA 82 ? A ALA 54 3 1 Y 1 A GLY 83 ? A GLY 55 4 1 Y 1 A LYS 84 ? A LYS 56 5 1 Y 1 A GLU 85 ? A GLU 57 6 1 Y 1 A LYS 86 ? A LYS 58 7 1 Y 1 B MET 167 ? B MET 9 8 1 Y 1 B SER 168 ? B SER 10 9 1 Y 1 B LYS 169 ? B LYS 11 10 1 Y 1 B PRO 170 ? B PRO 12 11 1 Y 1 C LYS 81 ? C LYS 53 12 1 Y 1 C ALA 82 ? C ALA 54 13 1 Y 1 C GLY 83 ? C GLY 55 14 1 Y 1 C LYS 84 ? C LYS 56 15 1 Y 1 C GLU 85 ? C GLU 57 16 1 Y 1 C LYS 86 ? C LYS 58 17 1 Y 1 D LYS 159 ? D LYS 1 18 1 Y 1 D PRO 170 ? D PRO 12 19 1 Y 1 E ALA 82 ? E ALA 54 20 1 Y 1 E GLY 83 ? E GLY 55 21 1 Y 1 E LYS 84 ? E LYS 56 22 1 Y 1 E GLU 85 ? E GLU 57 23 1 Y 1 E LYS 86 ? E LYS 58 24 1 Y 1 F SER 168 ? F SER 10 25 1 Y 1 F LYS 169 ? F LYS 11 26 1 Y 1 F PRO 170 ? F PRO 12 27 1 Y 1 G ALA 82 ? G ALA 54 28 1 Y 1 G GLY 83 ? G GLY 55 29 1 Y 1 G LYS 84 ? G LYS 56 30 1 Y 1 G GLU 85 ? G GLU 57 31 1 Y 1 G LYS 86 ? G LYS 58 32 1 Y 1 H THR 166 ? H THR 8 33 1 Y 1 H MET 167 ? H MET 9 34 1 Y 1 H SER 168 ? H SER 10 35 1 Y 1 H LYS 169 ? H LYS 11 36 1 Y 1 H PRO 170 ? H PRO 12 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #