data_3DML # _entry.id 3DML # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3DML RCSB RCSB048226 WWPDB D_1000048226 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3D4T _pdbx_database_related.details 'SoxS in its oxidized form' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3DML _pdbx_database_status.recvd_initial_deposition_date 2008-07-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Carius, Y.' 1 'Friedrich, C.G.' 2 'Scheidig, A.J.' 3 # _citation.id primary _citation.title ;Crystal structure of the periplasmic thioredoxin SoxS from Paracoccus pantotrophus indicates a dual Trx/Grx functionality for activation of chemotrophic sulfur oxidation in vivo ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Carius, Y.' 1 primary 'Rother, D.' 2 primary 'Friedrich, C.G.' 3 primary 'Scheidig, A.J.' 4 # _cell.entry_id 3DML _cell.length_a 80.909 _cell.length_b 80.909 _cell.length_c 33.212 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3DML _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative uncharacterized protein' 13315.221 1 1.8.4.- ? 'periplasmic domain, UNP residues 32-130' ? 2 water nat water 18.015 161 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thiol-disulfide oxidoreductase SoxS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RGSHHHHHHGSDDDDKAELRLL(MSE)FEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQ(MSE)RDPLPPGL ELARPVTFTPTFVL(MSE)AGDVESGRLEGYPGEDFFWP(MSE)LARLIGQAEPGQ ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTF VLMAGDVESGRLEGYPGEDFFWPMLARLIGQAEPGQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 SER n 1 13 ASP n 1 14 ASP n 1 15 ASP n 1 16 ASP n 1 17 LYS n 1 18 ALA n 1 19 GLU n 1 20 LEU n 1 21 ARG n 1 22 LEU n 1 23 LEU n 1 24 MSE n 1 25 PHE n 1 26 GLU n 1 27 GLN n 1 28 PRO n 1 29 GLY n 1 30 CYS n 1 31 LEU n 1 32 TYR n 1 33 CYS n 1 34 ALA n 1 35 ARG n 1 36 TRP n 1 37 ASP n 1 38 ALA n 1 39 GLU n 1 40 ILE n 1 41 ALA n 1 42 PRO n 1 43 GLN n 1 44 TYR n 1 45 PRO n 1 46 LEU n 1 47 THR n 1 48 ASP n 1 49 GLU n 1 50 GLY n 1 51 ARG n 1 52 ALA n 1 53 ALA n 1 54 PRO n 1 55 VAL n 1 56 GLN n 1 57 ARG n 1 58 LEU n 1 59 GLN n 1 60 MSE n 1 61 ARG n 1 62 ASP n 1 63 PRO n 1 64 LEU n 1 65 PRO n 1 66 PRO n 1 67 GLY n 1 68 LEU n 1 69 GLU n 1 70 LEU n 1 71 ALA n 1 72 ARG n 1 73 PRO n 1 74 VAL n 1 75 THR n 1 76 PHE n 1 77 THR n 1 78 PRO n 1 79 THR n 1 80 PHE n 1 81 VAL n 1 82 LEU n 1 83 MSE n 1 84 ALA n 1 85 GLY n 1 86 ASP n 1 87 VAL n 1 88 GLU n 1 89 SER n 1 90 GLY n 1 91 ARG n 1 92 LEU n 1 93 GLU n 1 94 GLY n 1 95 TYR n 1 96 PRO n 1 97 GLY n 1 98 GLU n 1 99 ASP n 1 100 PHE n 1 101 PHE n 1 102 TRP n 1 103 PRO n 1 104 MSE n 1 105 LEU n 1 106 ALA n 1 107 ARG n 1 108 LEU n 1 109 ILE n 1 110 GLY n 1 111 GLN n 1 112 ALA n 1 113 GLU n 1 114 PRO n 1 115 GLY n 1 116 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene soxS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain GB17 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Paracoccus denitrificans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 266 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'M15[pREP4]' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE-30 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8KM22_PARDE _struct_ref.pdbx_db_accession Q8KM22 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG EDFFWPMLARLIGQAEPGQ ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3DML _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 18 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 116 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8KM22 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 130 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3DML MSE A 1 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -16 1 1 3DML ARG A 2 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -15 2 1 3DML GLY A 3 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -14 3 1 3DML SER A 4 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -13 4 1 3DML HIS A 5 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -12 5 1 3DML HIS A 6 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -11 6 1 3DML HIS A 7 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -10 7 1 3DML HIS A 8 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -9 8 1 3DML HIS A 9 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -8 9 1 3DML HIS A 10 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -7 10 1 3DML GLY A 11 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -6 11 1 3DML SER A 12 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -5 12 1 3DML ASP A 13 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -4 13 1 3DML ASP A 14 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -3 14 1 3DML ASP A 15 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -2 15 1 3DML ASP A 16 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' -1 16 1 3DML LYS A 17 ? UNP Q8KM22 ? ? 'EXPRESSION TAG' 0 17 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3DML _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.4 _exptl_crystal_grow.pdbx_details ;0.1M citrate, 0.4M sodium phosphate, 0.4M potassium phosphate, 3% (w/v) glucose, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2006-09-22 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si[111]' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.95369 1.0 2 0.97833 1.0 3 0.97838 1.0 4 1.0332 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.95369, 0.97833, 0.97838, 1.0332' # _reflns.entry_id 3DML _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 20.71 _reflns.number_all 10064 _reflns.number_obs 9998 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value 0.083 _reflns.pdbx_netI_over_sigmaI 30.87 _reflns.B_iso_Wilson_estimate 18.37 _reflns.pdbx_redundancy 6.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.94 _reflns_shell.percent_possible_all 97.9 _reflns_shell.Rmerge_I_obs 0.447 _reflns_shell.pdbx_Rsym_value 0.447 _reflns_shell.meanI_over_sigI_obs 6.36 _reflns_shell.pdbx_redundancy 5.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 662 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3DML _refine.ls_number_reflns_obs 9530 _refine.ls_number_reflns_all 9557 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.71 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.72 _refine.ls_R_factor_obs 0.15668 _refine.ls_R_factor_all 0.15668 _refine.ls_R_factor_R_work 0.1544 _refine.ls_R_factor_R_free 0.20124 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 480 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.966 _refine.correlation_coeff_Fo_to_Fc_free 0.951 _refine.B_iso_mean 22.168 _refine.aniso_B[1][1] 0.30 _refine.aniso_B[2][2] 0.30 _refine.aniso_B[3][3] -0.45 _refine.aniso_B[1][2] 0.15 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.123 _refine.pdbx_overall_ESU_R_Free 0.124 _refine.overall_SU_ML 0.085 _refine.overall_SU_B 2.867 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3DML _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free 0.124 _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 799 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 162 _refine_hist.number_atoms_total 961 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 20.71 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.022 ? 829 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.512 2.004 ? 1141 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.667 5.000 ? 110 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.723 23.171 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.954 15.000 ? 138 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.553 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.098 0.200 ? 120 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 668 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.225 0.200 ? 400 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.320 0.200 ? 553 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.192 0.200 ? 114 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.216 0.200 ? 45 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.214 0.200 ? 21 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.659 1.500 ? 520 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.738 2.000 ? 818 'X-RAY DIFFRACTION' ? r_scbond_it 2.847 3.000 ? 358 'X-RAY DIFFRACTION' ? r_scangle_it 4.157 4.500 ? 315 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.902 _refine_ls_shell.d_res_low 1.951 _refine_ls_shell.number_reflns_R_work 684 _refine_ls_shell.R_factor_R_work 0.199 _refine_ls_shell.percent_reflns_obs 97.28 _refine_ls_shell.R_factor_R_free 0.234 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 32 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 684 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3DML _struct.title 'Crystal structure of the periplasmic thioredoxin SoxS from Paracoccus pantotrophus (reduced form)' _struct.pdbx_descriptor 'Putative uncharacterized protein (E.C.1.8.4.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3DML _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'thioredoxin, oxidoreductase, sulfur oxidation, thiol-disulfide oxidoreductase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 30 ? ILE A 40 ? CYS A 13 ILE A 23 1 ? 11 HELX_P HELX_P2 2 GLN A 43 ? LEU A 46 ? GLN A 26 LEU A 29 5 ? 4 HELX_P HELX_P3 3 THR A 47 ? ALA A 53 ? THR A 30 ALA A 36 1 ? 7 HELX_P HELX_P4 4 GLY A 97 ? GLU A 113 ? GLY A 80 GLU A 96 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 23 C ? ? ? 1_555 A MSE 24 N ? ? A LEU 6 A MSE 7 1_555 ? ? ? ? ? ? ? 1.320 ? covale2 covale ? ? A MSE 24 C ? ? ? 1_555 A PHE 25 N ? ? A MSE 7 A PHE 8 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A GLN 59 C ? ? ? 1_555 A MSE 60 N ? ? A GLN 42 A MSE 43 1_555 ? ? ? ? ? ? ? 1.332 ? covale4 covale ? ? A MSE 60 C ? ? ? 1_555 A ARG 61 N ? ? A MSE 43 A ARG 44 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A LEU 82 C ? ? ? 1_555 A MSE 83 N ? ? A LEU 65 A MSE 66 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MSE 83 C ? ? ? 1_555 A ALA 84 N ? ? A MSE 66 A ALA 67 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale ? ? A PRO 103 C ? ? ? 1_555 A MSE 104 N ? ? A PRO 86 A MSE 87 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 104 C ? ? ? 1_555 A LEU 105 N ? ? A MSE 87 A LEU 88 1_555 ? ? ? ? ? ? ? 1.332 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 60 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 61 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.15 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 55 ? GLN A 59 ? VAL A 38 GLN A 42 A 2 LEU A 20 ? GLU A 26 ? LEU A 3 GLU A 9 A 3 THR A 79 ? ALA A 84 ? THR A 62 ALA A 67 A 4 VAL A 87 ? GLU A 93 ? VAL A 70 GLU A 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 56 ? O GLN A 39 N MSE A 24 ? N MSE A 7 A 2 3 N LEU A 23 ? N LEU A 6 O VAL A 81 ? O VAL A 64 A 3 4 N LEU A 82 ? N LEU A 65 O SER A 89 ? O SER A 72 # _database_PDB_matrix.entry_id 3DML _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3DML _atom_sites.fract_transf_matrix[1][1] 0.012360 _atom_sites.fract_transf_matrix[1][2] 0.007136 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014272 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030110 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -16 ? ? ? A . n A 1 2 ARG 2 -15 ? ? ? A . n A 1 3 GLY 3 -14 ? ? ? A . n A 1 4 SER 4 -13 ? ? ? A . n A 1 5 HIS 5 -12 ? ? ? A . n A 1 6 HIS 6 -11 ? ? ? A . n A 1 7 HIS 7 -10 ? ? ? A . n A 1 8 HIS 8 -9 ? ? ? A . n A 1 9 HIS 9 -8 ? ? ? A . n A 1 10 HIS 10 -7 ? ? ? A . n A 1 11 GLY 11 -6 ? ? ? A . n A 1 12 SER 12 -5 ? ? ? A . n A 1 13 ASP 13 -4 ? ? ? A . n A 1 14 ASP 14 -3 ? ? ? A . n A 1 15 ASP 15 -2 ? ? ? A . n A 1 16 ASP 16 -1 ? ? ? A . n A 1 17 LYS 17 0 ? ? ? A . n A 1 18 ALA 18 1 ? ? ? A . n A 1 19 GLU 19 2 2 GLU GLU A . n A 1 20 LEU 20 3 3 LEU LEU A . n A 1 21 ARG 21 4 4 ARG ARG A . n A 1 22 LEU 22 5 5 LEU LEU A . n A 1 23 LEU 23 6 6 LEU LEU A . n A 1 24 MSE 24 7 7 MSE MSE A . n A 1 25 PHE 25 8 8 PHE PHE A . n A 1 26 GLU 26 9 9 GLU GLU A . n A 1 27 GLN 27 10 10 GLN GLN A . n A 1 28 PRO 28 11 11 PRO PRO A . n A 1 29 GLY 29 12 12 GLY GLY A . n A 1 30 CYS 30 13 13 CYS CYS A . n A 1 31 LEU 31 14 14 LEU LEU A . n A 1 32 TYR 32 15 15 TYR TYR A . n A 1 33 CYS 33 16 16 CYS CYS A . n A 1 34 ALA 34 17 17 ALA ALA A . n A 1 35 ARG 35 18 18 ARG ARG A . n A 1 36 TRP 36 19 19 TRP TRP A . n A 1 37 ASP 37 20 20 ASP ASP A . n A 1 38 ALA 38 21 21 ALA ALA A . n A 1 39 GLU 39 22 22 GLU GLU A . n A 1 40 ILE 40 23 23 ILE ILE A . n A 1 41 ALA 41 24 24 ALA ALA A . n A 1 42 PRO 42 25 25 PRO PRO A . n A 1 43 GLN 43 26 26 GLN GLN A . n A 1 44 TYR 44 27 27 TYR TYR A . n A 1 45 PRO 45 28 28 PRO PRO A . n A 1 46 LEU 46 29 29 LEU LEU A . n A 1 47 THR 47 30 30 THR THR A . n A 1 48 ASP 48 31 31 ASP ASP A . n A 1 49 GLU 49 32 32 GLU GLU A . n A 1 50 GLY 50 33 33 GLY GLY A . n A 1 51 ARG 51 34 34 ARG ARG A . n A 1 52 ALA 52 35 35 ALA ALA A . n A 1 53 ALA 53 36 36 ALA ALA A . n A 1 54 PRO 54 37 37 PRO PRO A . n A 1 55 VAL 55 38 38 VAL VAL A . n A 1 56 GLN 56 39 39 GLN GLN A . n A 1 57 ARG 57 40 40 ARG ARG A . n A 1 58 LEU 58 41 41 LEU LEU A . n A 1 59 GLN 59 42 42 GLN GLN A . n A 1 60 MSE 60 43 43 MSE MSE A . n A 1 61 ARG 61 44 44 ARG ARG A . n A 1 62 ASP 62 45 45 ASP ASP A . n A 1 63 PRO 63 46 46 PRO PRO A . n A 1 64 LEU 64 47 47 LEU LEU A . n A 1 65 PRO 65 48 48 PRO PRO A . n A 1 66 PRO 66 49 49 PRO PRO A . n A 1 67 GLY 67 50 50 GLY GLY A . n A 1 68 LEU 68 51 51 LEU LEU A . n A 1 69 GLU 69 52 52 GLU GLU A . n A 1 70 LEU 70 53 53 LEU LEU A . n A 1 71 ALA 71 54 54 ALA ALA A . n A 1 72 ARG 72 55 55 ARG ARG A . n A 1 73 PRO 73 56 56 PRO PRO A . n A 1 74 VAL 74 57 57 VAL VAL A . n A 1 75 THR 75 58 58 THR THR A . n A 1 76 PHE 76 59 59 PHE PHE A . n A 1 77 THR 77 60 60 THR THR A . n A 1 78 PRO 78 61 61 PRO PRO A . n A 1 79 THR 79 62 62 THR THR A . n A 1 80 PHE 80 63 63 PHE PHE A . n A 1 81 VAL 81 64 64 VAL VAL A . n A 1 82 LEU 82 65 65 LEU LEU A . n A 1 83 MSE 83 66 66 MSE MSE A . n A 1 84 ALA 84 67 67 ALA ALA A . n A 1 85 GLY 85 68 68 GLY GLY A . n A 1 86 ASP 86 69 69 ASP ASP A . n A 1 87 VAL 87 70 70 VAL VAL A . n A 1 88 GLU 88 71 71 GLU GLU A . n A 1 89 SER 89 72 72 SER SER A . n A 1 90 GLY 90 73 73 GLY GLY A . n A 1 91 ARG 91 74 74 ARG ARG A . n A 1 92 LEU 92 75 75 LEU LEU A . n A 1 93 GLU 93 76 76 GLU GLU A . n A 1 94 GLY 94 77 77 GLY GLY A . n A 1 95 TYR 95 78 78 TYR TYR A . n A 1 96 PRO 96 79 79 PRO PRO A . n A 1 97 GLY 97 80 80 GLY GLY A . n A 1 98 GLU 98 81 81 GLU GLU A . n A 1 99 ASP 99 82 82 ASP ASP A . n A 1 100 PHE 100 83 83 PHE PHE A . n A 1 101 PHE 101 84 84 PHE PHE A . n A 1 102 TRP 102 85 85 TRP TRP A . n A 1 103 PRO 103 86 86 PRO PRO A . n A 1 104 MSE 104 87 87 MSE MSE A . n A 1 105 LEU 105 88 88 LEU LEU A . n A 1 106 ALA 106 89 89 ALA ALA A . n A 1 107 ARG 107 90 90 ARG ARG A . n A 1 108 LEU 108 91 91 LEU LEU A . n A 1 109 ILE 109 92 92 ILE ILE A . n A 1 110 GLY 110 93 93 GLY GLY A . n A 1 111 GLN 111 94 94 GLN GLN A . n A 1 112 ALA 112 95 95 ALA ALA A . n A 1 113 GLU 113 96 96 GLU GLU A . n A 1 114 PRO 114 97 97 PRO PRO A . n A 1 115 GLY 115 98 ? ? ? A . n A 1 116 GLN 116 99 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 501 501 HOH HOH A . B 2 HOH 2 502 502 HOH HOH A . B 2 HOH 3 503 503 HOH HOH A . B 2 HOH 4 504 504 HOH HOH A . B 2 HOH 5 505 505 HOH HOH A . B 2 HOH 6 506 506 HOH HOH A . B 2 HOH 7 507 507 HOH HOH A . B 2 HOH 8 508 508 HOH HOH A . B 2 HOH 9 509 509 HOH HOH A . B 2 HOH 10 510 510 HOH HOH A . B 2 HOH 11 511 511 HOH HOH A . B 2 HOH 12 512 512 HOH HOH A . B 2 HOH 13 513 513 HOH HOH A . B 2 HOH 14 514 514 HOH HOH A . B 2 HOH 15 515 515 HOH HOH A . B 2 HOH 16 516 516 HOH HOH A . B 2 HOH 17 517 517 HOH HOH A . B 2 HOH 18 518 518 HOH HOH A . B 2 HOH 19 519 519 HOH HOH A . B 2 HOH 20 520 520 HOH HOH A . B 2 HOH 21 521 521 HOH HOH A . B 2 HOH 22 522 522 HOH HOH A . B 2 HOH 23 523 523 HOH HOH A . B 2 HOH 24 524 524 HOH HOH A . B 2 HOH 25 525 525 HOH HOH A . B 2 HOH 26 526 526 HOH HOH A . B 2 HOH 27 527 527 HOH HOH A . B 2 HOH 28 528 528 HOH HOH A . B 2 HOH 29 529 529 HOH HOH A . B 2 HOH 30 530 530 HOH HOH A . B 2 HOH 31 531 531 HOH HOH A . B 2 HOH 32 532 532 HOH HOH A . B 2 HOH 33 533 533 HOH HOH A . B 2 HOH 34 534 534 HOH HOH A . B 2 HOH 35 535 535 HOH HOH A . B 2 HOH 36 536 536 HOH HOH A . B 2 HOH 37 537 537 HOH HOH A . B 2 HOH 38 538 538 HOH HOH A . B 2 HOH 39 539 539 HOH HOH A . B 2 HOH 40 540 540 HOH HOH A . B 2 HOH 41 541 541 HOH HOH A . B 2 HOH 42 542 542 HOH HOH A . B 2 HOH 43 543 543 HOH HOH A . B 2 HOH 44 544 544 HOH HOH A . B 2 HOH 45 545 545 HOH HOH A . B 2 HOH 46 546 546 HOH HOH A . B 2 HOH 47 547 547 HOH HOH A . B 2 HOH 48 548 548 HOH HOH A . B 2 HOH 49 549 549 HOH HOH A . B 2 HOH 50 550 550 HOH HOH A . B 2 HOH 51 551 551 HOH HOH A . B 2 HOH 52 552 552 HOH HOH A . B 2 HOH 53 553 553 HOH HOH A . B 2 HOH 54 554 554 HOH HOH A . B 2 HOH 55 555 555 HOH HOH A . B 2 HOH 56 556 556 HOH HOH A . B 2 HOH 57 557 557 HOH HOH A . B 2 HOH 58 558 558 HOH HOH A . B 2 HOH 59 559 559 HOH HOH A . B 2 HOH 60 560 560 HOH HOH A . B 2 HOH 61 561 561 HOH HOH A . B 2 HOH 62 562 562 HOH HOH A . B 2 HOH 63 563 563 HOH HOH A . B 2 HOH 64 564 564 HOH HOH A . B 2 HOH 65 565 565 HOH HOH A . B 2 HOH 66 566 566 HOH HOH A . B 2 HOH 67 567 567 HOH HOH A . B 2 HOH 68 568 568 HOH HOH A . B 2 HOH 69 569 569 HOH HOH A . B 2 HOH 70 570 570 HOH HOH A . B 2 HOH 71 571 571 HOH HOH A . B 2 HOH 72 572 572 HOH HOH A . B 2 HOH 73 573 573 HOH HOH A . B 2 HOH 74 574 574 HOH HOH A . B 2 HOH 75 575 575 HOH HOH A . B 2 HOH 76 576 576 HOH HOH A . B 2 HOH 77 577 577 HOH HOH A . B 2 HOH 78 578 578 HOH HOH A . B 2 HOH 79 579 579 HOH HOH A . B 2 HOH 80 580 580 HOH HOH A . B 2 HOH 81 581 581 HOH HOH A . B 2 HOH 82 582 582 HOH HOH A . B 2 HOH 83 583 583 HOH HOH A . B 2 HOH 84 584 584 HOH HOH A . B 2 HOH 85 585 585 HOH HOH A . B 2 HOH 86 586 586 HOH HOH A . B 2 HOH 87 587 587 HOH HOH A . B 2 HOH 88 588 588 HOH HOH A . B 2 HOH 89 589 589 HOH HOH A . B 2 HOH 90 590 590 HOH HOH A . B 2 HOH 91 591 591 HOH HOH A . B 2 HOH 92 592 592 HOH HOH A . B 2 HOH 93 593 593 HOH HOH A . B 2 HOH 94 594 594 HOH HOH A . B 2 HOH 95 595 595 HOH HOH A . B 2 HOH 96 596 596 HOH HOH A . B 2 HOH 97 597 597 HOH HOH A . B 2 HOH 98 598 598 HOH HOH A . B 2 HOH 99 599 599 HOH HOH A . B 2 HOH 100 600 600 HOH HOH A . B 2 HOH 101 601 601 HOH HOH A . B 2 HOH 102 602 602 HOH HOH A . B 2 HOH 103 603 603 HOH HOH A . B 2 HOH 104 604 604 HOH HOH A . B 2 HOH 105 605 605 HOH HOH A . B 2 HOH 106 606 606 HOH HOH A . B 2 HOH 107 607 607 HOH HOH A . B 2 HOH 108 608 608 HOH HOH A . B 2 HOH 109 609 609 HOH HOH A . B 2 HOH 110 610 610 HOH HOH A . B 2 HOH 111 611 611 HOH HOH A . B 2 HOH 112 612 612 HOH HOH A . B 2 HOH 113 613 613 HOH HOH A . B 2 HOH 114 614 614 HOH HOH A . B 2 HOH 115 615 615 HOH HOH A . B 2 HOH 116 616 616 HOH HOH A . B 2 HOH 117 617 617 HOH HOH A . B 2 HOH 118 618 618 HOH HOH A . B 2 HOH 119 619 619 HOH HOH A . B 2 HOH 120 620 620 HOH HOH A . B 2 HOH 121 621 621 HOH HOH A . B 2 HOH 122 622 622 HOH HOH A . B 2 HOH 123 623 623 HOH HOH A . B 2 HOH 124 624 624 HOH HOH A . B 2 HOH 125 625 625 HOH HOH A . B 2 HOH 126 626 626 HOH HOH A . B 2 HOH 127 628 628 HOH HOH A . B 2 HOH 128 629 629 HOH HOH A . B 2 HOH 129 630 630 HOH HOH A . B 2 HOH 130 631 631 HOH HOH A . B 2 HOH 131 632 632 HOH HOH A . B 2 HOH 132 633 633 HOH HOH A . B 2 HOH 133 635 635 HOH HOH A . B 2 HOH 134 636 636 HOH HOH A . B 2 HOH 135 637 637 HOH HOH A . B 2 HOH 136 638 638 HOH HOH A . B 2 HOH 137 639 639 HOH HOH A . B 2 HOH 138 640 640 HOH HOH A . B 2 HOH 139 641 641 HOH HOH A . B 2 HOH 140 642 642 HOH HOH A . B 2 HOH 141 643 643 HOH HOH A . B 2 HOH 142 644 644 HOH HOH A . B 2 HOH 143 645 645 HOH HOH A . B 2 HOH 144 646 646 HOH HOH A . B 2 HOH 145 647 647 HOH HOH A . B 2 HOH 146 648 648 HOH HOH A . B 2 HOH 147 649 649 HOH HOH A . B 2 HOH 148 650 650 HOH HOH A . B 2 HOH 149 651 651 HOH HOH A . B 2 HOH 150 652 652 HOH HOH A . B 2 HOH 151 653 653 HOH HOH A . B 2 HOH 152 655 655 HOH HOH A . B 2 HOH 153 656 656 HOH HOH A . B 2 HOH 154 657 657 HOH HOH A . B 2 HOH 155 658 658 HOH HOH A . B 2 HOH 156 659 659 HOH HOH A . B 2 HOH 157 661 661 HOH HOH A . B 2 HOH 158 662 662 HOH HOH A . B 2 HOH 159 663 663 HOH HOH A . B 2 HOH 160 665 665 HOH HOH A . B 2 HOH 161 667 667 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 24 A MSE 7 ? MET SELENOMETHIONINE 2 A MSE 60 A MSE 43 ? MET SELENOMETHIONINE 3 A MSE 83 A MSE 66 ? MET SELENOMETHIONINE 4 A MSE 104 A MSE 87 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 505 ? B HOH . 2 1 A HOH 515 ? B HOH . 3 1 A HOH 603 ? B HOH . 4 1 A HOH 655 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-08-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_software.name' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR345 'data collection' CCD ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 Auto-Rickshaw phasing . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PRO 97 ? CA ? A PRO 114 CA 2 1 Y 1 A PRO 97 ? C ? A PRO 114 C 3 1 Y 1 A PRO 97 ? O ? A PRO 114 O 4 1 Y 1 A PRO 97 ? CB ? A PRO 114 CB 5 1 Y 1 A PRO 97 ? CG ? A PRO 114 CG 6 1 Y 1 A PRO 97 ? CD ? A PRO 114 CD # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -16 ? A MSE 1 2 1 Y 1 A ARG -15 ? A ARG 2 3 1 Y 1 A GLY -14 ? A GLY 3 4 1 Y 1 A SER -13 ? A SER 4 5 1 Y 1 A HIS -12 ? A HIS 5 6 1 Y 1 A HIS -11 ? A HIS 6 7 1 Y 1 A HIS -10 ? A HIS 7 8 1 Y 1 A HIS -9 ? A HIS 8 9 1 Y 1 A HIS -8 ? A HIS 9 10 1 Y 1 A HIS -7 ? A HIS 10 11 1 Y 1 A GLY -6 ? A GLY 11 12 1 Y 1 A SER -5 ? A SER 12 13 1 Y 1 A ASP -4 ? A ASP 13 14 1 Y 1 A ASP -3 ? A ASP 14 15 1 Y 1 A ASP -2 ? A ASP 15 16 1 Y 1 A ASP -1 ? A ASP 16 17 1 Y 1 A LYS 0 ? A LYS 17 18 1 Y 1 A ALA 1 ? A ALA 18 19 1 Y 1 A GLY 98 ? A GLY 115 20 1 Y 1 A GLN 99 ? A GLN 116 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #