HEADER HYDROLASE 01-JUL-08 3DMO TITLE 1.6 A CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM BURKHOLDERIA TITLE 2 PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTIDINE DEAMINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.4.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PSEUDOMALLEI; SOURCE 4 ORGANISM_TAXID: 28450; SOURCE 5 STRAIN: 1710B; SOURCE 6 GENE: CDD, BPSS1959; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BG1861RC KEYWDS BURKHOLDERIA, PSEUDOMALLEI, CYTIDINE, DEAMINASE, STRUCTURAL GENOMICS, KEYWDS 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 21-FEB-24 3DMO 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3DMO 1 REMARK REVDAT 2 24-FEB-09 3DMO 1 VERSN REVDAT 1 15-JUL-08 3DMO 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL 1.6 A CRYSTAL STRUCTURE OF CYTIDINE DEAMINASE FROM JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 87989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6094 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE SET COUNT : 307 REMARK 3 BIN FREE R VALUE : 0.3980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.437 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3973 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5411 ; 1.152 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 530 ; 4.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;42.339 ;23.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 589 ;14.072 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.117 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 614 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3032 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1842 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2695 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 326 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.114 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.138 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 0.526 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4116 ; 0.897 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1456 ; 1.480 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1288 ; 2.494 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.77900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% MPD, 0.1M NA/K PHOSPHATE, PH 6.2, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.15400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -216.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 TYR B 128 REMARK 465 LEU B 129 REMARK 465 ALA B 130 REMARK 465 MET C -7 REMARK 465 ALA C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 TYR C 128 REMARK 465 LEU C 129 REMARK 465 ALA C 130 REMARK 465 MET D -7 REMARK 465 ALA D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 191 O HOH A 217 1.90 REMARK 500 O HOH D 140 O HOH D 212 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 100 157.76 72.54 REMARK 500 LYS B 100 156.95 72.33 REMARK 500 LYS C 100 156.03 73.39 REMARK 500 LYS D 100 158.04 73.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 131 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 53 SG REMARK 620 2 CYS A 88 SG 114.5 REMARK 620 3 CYS A 91 SG 99.7 115.0 REMARK 620 4 HOH A 166 O 110.5 111.7 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 131 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 53 SG REMARK 620 2 CYS B 88 SG 114.4 REMARK 620 3 CYS B 91 SG 104.3 117.5 REMARK 620 4 HOH B 137 O 109.8 107.7 102.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 131 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 53 SG REMARK 620 2 CYS C 88 SG 114.5 REMARK 620 3 CYS C 91 SG 102.9 117.5 REMARK 620 4 HOH C 135 O 111.6 106.2 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 131 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 53 SG REMARK 620 2 CYS D 88 SG 113.4 REMARK 620 3 CYS D 91 SG 100.6 116.2 REMARK 620 4 HOH D 178 O 109.4 111.2 105.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD D 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD C 132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 133 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.00001.A RELATED DB: TARGETDB DBREF 3DMO A 1 130 UNP Q63IV7 Q63IV7_BURPS 1 130 DBREF 3DMO B 1 130 UNP Q63IV7 Q63IV7_BURPS 1 130 DBREF 3DMO C 1 130 UNP Q63IV7 Q63IV7_BURPS 1 130 DBREF 3DMO D 1 130 UNP Q63IV7 Q63IV7_BURPS 1 130 SEQADV 3DMO MET A -7 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO ALA A -6 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS A -5 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS A -4 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS A -3 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS A -2 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS A -1 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS A 0 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO MET B -7 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO ALA B -6 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS B -5 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS B -4 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS B -3 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS B -2 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS B -1 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS B 0 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO MET C -7 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO ALA C -6 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS C -5 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS C -4 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS C -3 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS C -2 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS C -1 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS C 0 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO MET D -7 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO ALA D -6 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS D -5 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS D -4 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS D -3 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS D -2 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS D -1 UNP Q63IV7 EXPRESSION TAG SEQADV 3DMO HIS D 0 UNP Q63IV7 EXPRESSION TAG SEQRES 1 A 138 MET ALA HIS HIS HIS HIS HIS HIS MET THR HIS HIS ALA SEQRES 2 A 138 LEU ILE GLU ALA ALA LYS ALA ALA ARG GLU LYS ALA TYR SEQRES 3 A 138 ALA PRO TYR SER ASN PHE LYS VAL GLY ALA ALA LEU VAL SEQRES 4 A 138 THR ASN ASP GLY LYS VAL PHE HIS GLY CYS ASN VAL GLU SEQRES 5 A 138 ASN ALA SER TYR GLY LEU CYS ASN CYS ALA GLU ARG THR SEQRES 6 A 138 ALA LEU PHE SER ALA LEU ALA ALA GLY TYR ARG PRO GLY SEQRES 7 A 138 GLU PHE ALA ALA ILE ALA VAL VAL GLY GLU THR HIS GLY SEQRES 8 A 138 PRO ILE ALA PRO CYS GLY ALA CYS ARG GLN VAL MET ILE SEQRES 9 A 138 GLU LEU GLY LYS PRO THR LEU GLU VAL VAL LEU THR ASN SEQRES 10 A 138 MET GLN GLY ASP VAL ARG VAL THR SER ALA GLY ASP LEU SEQRES 11 A 138 LEU PRO ASP ALA PHE TYR LEU ALA SEQRES 1 B 138 MET ALA HIS HIS HIS HIS HIS HIS MET THR HIS HIS ALA SEQRES 2 B 138 LEU ILE GLU ALA ALA LYS ALA ALA ARG GLU LYS ALA TYR SEQRES 3 B 138 ALA PRO TYR SER ASN PHE LYS VAL GLY ALA ALA LEU VAL SEQRES 4 B 138 THR ASN ASP GLY LYS VAL PHE HIS GLY CYS ASN VAL GLU SEQRES 5 B 138 ASN ALA SER TYR GLY LEU CYS ASN CYS ALA GLU ARG THR SEQRES 6 B 138 ALA LEU PHE SER ALA LEU ALA ALA GLY TYR ARG PRO GLY SEQRES 7 B 138 GLU PHE ALA ALA ILE ALA VAL VAL GLY GLU THR HIS GLY SEQRES 8 B 138 PRO ILE ALA PRO CYS GLY ALA CYS ARG GLN VAL MET ILE SEQRES 9 B 138 GLU LEU GLY LYS PRO THR LEU GLU VAL VAL LEU THR ASN SEQRES 10 B 138 MET GLN GLY ASP VAL ARG VAL THR SER ALA GLY ASP LEU SEQRES 11 B 138 LEU PRO ASP ALA PHE TYR LEU ALA SEQRES 1 C 138 MET ALA HIS HIS HIS HIS HIS HIS MET THR HIS HIS ALA SEQRES 2 C 138 LEU ILE GLU ALA ALA LYS ALA ALA ARG GLU LYS ALA TYR SEQRES 3 C 138 ALA PRO TYR SER ASN PHE LYS VAL GLY ALA ALA LEU VAL SEQRES 4 C 138 THR ASN ASP GLY LYS VAL PHE HIS GLY CYS ASN VAL GLU SEQRES 5 C 138 ASN ALA SER TYR GLY LEU CYS ASN CYS ALA GLU ARG THR SEQRES 6 C 138 ALA LEU PHE SER ALA LEU ALA ALA GLY TYR ARG PRO GLY SEQRES 7 C 138 GLU PHE ALA ALA ILE ALA VAL VAL GLY GLU THR HIS GLY SEQRES 8 C 138 PRO ILE ALA PRO CYS GLY ALA CYS ARG GLN VAL MET ILE SEQRES 9 C 138 GLU LEU GLY LYS PRO THR LEU GLU VAL VAL LEU THR ASN SEQRES 10 C 138 MET GLN GLY ASP VAL ARG VAL THR SER ALA GLY ASP LEU SEQRES 11 C 138 LEU PRO ASP ALA PHE TYR LEU ALA SEQRES 1 D 138 MET ALA HIS HIS HIS HIS HIS HIS MET THR HIS HIS ALA SEQRES 2 D 138 LEU ILE GLU ALA ALA LYS ALA ALA ARG GLU LYS ALA TYR SEQRES 3 D 138 ALA PRO TYR SER ASN PHE LYS VAL GLY ALA ALA LEU VAL SEQRES 4 D 138 THR ASN ASP GLY LYS VAL PHE HIS GLY CYS ASN VAL GLU SEQRES 5 D 138 ASN ALA SER TYR GLY LEU CYS ASN CYS ALA GLU ARG THR SEQRES 6 D 138 ALA LEU PHE SER ALA LEU ALA ALA GLY TYR ARG PRO GLY SEQRES 7 D 138 GLU PHE ALA ALA ILE ALA VAL VAL GLY GLU THR HIS GLY SEQRES 8 D 138 PRO ILE ALA PRO CYS GLY ALA CYS ARG GLN VAL MET ILE SEQRES 9 D 138 GLU LEU GLY LYS PRO THR LEU GLU VAL VAL LEU THR ASN SEQRES 10 D 138 MET GLN GLY ASP VAL ARG VAL THR SER ALA GLY ASP LEU SEQRES 11 D 138 LEU PRO ASP ALA PHE TYR LEU ALA HET ZN A 131 1 HET MRD A 132 8 HET ZN B 131 1 HET PO4 B 132 5 HET MRD B 133 8 HET ZN C 131 1 HET MRD C 132 8 HET ZN D 131 1 HET MRD D 132 8 HETNAM ZN ZINC ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETNAM PO4 PHOSPHATE ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 MRD 4(C6 H14 O2) FORMUL 8 PO4 O4 P 3- FORMUL 14 HOH *362(H2 O) HELIX 1 1 THR A 2 GLU A 15 1 14 HELIX 2 2 SER A 47 CYS A 51 5 5 HELIX 3 3 CYS A 53 ALA A 65 1 13 HELIX 4 4 CYS A 88 LYS A 100 1 13 HELIX 5 5 ALA A 119 LEU A 123 1 5 HELIX 6 6 THR B 2 GLU B 15 1 14 HELIX 7 7 SER B 47 CYS B 51 5 5 HELIX 8 8 CYS B 53 ALA B 65 1 13 HELIX 9 9 CYS B 88 LYS B 100 1 13 HELIX 10 10 ALA B 119 LEU B 123 1 5 HELIX 11 11 THR C 2 GLU C 15 1 14 HELIX 12 12 SER C 47 CYS C 51 5 5 HELIX 13 13 CYS C 53 ALA C 65 1 13 HELIX 14 14 CYS C 88 LYS C 100 1 13 HELIX 15 15 ALA C 119 LEU C 123 1 5 HELIX 16 16 THR D 2 GLU D 15 1 14 HELIX 17 17 SER D 47 CYS D 51 5 5 HELIX 18 18 CYS D 53 ALA D 65 1 13 HELIX 19 19 CYS D 88 LYS D 100 1 13 HELIX 20 20 ALA D 119 LEU D 123 1 5 SHEET 1 A 5 VAL A 37 CYS A 41 0 SHEET 2 A 5 VAL A 26 THR A 32 -1 N LEU A 30 O PHE A 38 SHEET 3 A 5 PHE A 72 GLY A 79 -1 O ALA A 74 N VAL A 31 SHEET 4 A 5 GLU A 104 THR A 108 1 O VAL A 106 N ILE A 75 SHEET 5 A 5 VAL A 114 SER A 118 -1 O ARG A 115 N LEU A 107 SHEET 1 B 5 VAL B 37 CYS B 41 0 SHEET 2 B 5 GLY B 27 THR B 32 -1 N LEU B 30 O PHE B 38 SHEET 3 B 5 PHE B 72 GLY B 79 -1 O ALA B 74 N VAL B 31 SHEET 4 B 5 GLU B 104 ASN B 109 1 O VAL B 106 N ILE B 75 SHEET 5 B 5 VAL B 114 SER B 118 -1 O ARG B 115 N LEU B 107 SHEET 1 C 5 VAL C 37 CYS C 41 0 SHEET 2 C 5 GLY C 27 THR C 32 -1 N LEU C 30 O PHE C 38 SHEET 3 C 5 PHE C 72 GLY C 79 -1 O ALA C 76 N ALA C 29 SHEET 4 C 5 GLU C 104 ASN C 109 1 O VAL C 106 N ILE C 75 SHEET 5 C 5 VAL C 114 SER C 118 -1 O ARG C 115 N LEU C 107 SHEET 1 D 5 VAL D 37 CYS D 41 0 SHEET 2 D 5 VAL D 26 THR D 32 -1 N LEU D 30 O PHE D 38 SHEET 3 D 5 PHE D 72 GLY D 79 -1 O ALA D 74 N VAL D 31 SHEET 4 D 5 GLU D 104 THR D 108 1 O VAL D 106 N ILE D 75 SHEET 5 D 5 VAL D 114 SER D 118 -1 O ARG D 115 N LEU D 107 LINK SG CYS A 53 ZN ZN A 131 1555 1555 2.40 LINK SG CYS A 88 ZN ZN A 131 1555 1555 2.21 LINK SG CYS A 91 ZN ZN A 131 1555 1555 2.38 LINK ZN ZN A 131 O HOH A 166 1555 1555 2.14 LINK SG CYS B 53 ZN ZN B 131 1555 1555 2.33 LINK SG CYS B 88 ZN ZN B 131 1555 1555 2.36 LINK SG CYS B 91 ZN ZN B 131 1555 1555 2.12 LINK ZN ZN B 131 O HOH B 137 1555 1555 2.28 LINK SG CYS C 53 ZN ZN C 131 1555 1555 2.34 LINK SG CYS C 88 ZN ZN C 131 1555 1555 2.36 LINK SG CYS C 91 ZN ZN C 131 1555 1555 2.09 LINK ZN ZN C 131 O HOH C 135 1555 1555 2.19 LINK SG CYS D 53 ZN ZN D 131 1555 1555 2.37 LINK SG CYS D 88 ZN ZN D 131 1555 1555 2.24 LINK SG CYS D 91 ZN ZN D 131 1555 1555 2.31 LINK ZN ZN D 131 O HOH D 178 1555 1555 2.14 SITE 1 AC1 3 CYS D 53 CYS D 88 CYS D 91 SITE 1 AC2 3 CYS C 53 CYS C 88 CYS C 91 SITE 1 AC3 3 CYS B 53 CYS B 88 CYS B 91 SITE 1 AC4 3 CYS A 53 CYS A 88 CYS A 91 SITE 1 AC5 2 THR B 2 HIS B 3 SITE 1 AC6 8 LEU A 129 ALA B 46 SER B 47 TYR B 48 SITE 2 AC6 8 PHE D 24 ASN D 42 GLU D 44 CYS D 51 SITE 1 AC7 6 ASN A 42 GLU A 44 ALA C 46 SER C 47 SITE 2 AC7 6 TYR C 48 LEU D 129 SITE 1 AC8 5 ALA A 46 SER A 47 TYR A 48 ASN C 42 SITE 2 AC8 5 GLU C 44 SITE 1 AC9 5 ASN B 42 GLU B 44 ALA D 46 SER D 47 SITE 2 AC9 5 TYR D 48 CRYST1 60.495 72.308 83.327 90.00 111.29 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016530 0.000000 0.006442 0.00000 SCALE2 0.000000 0.013830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012880 0.00000