HEADER TRANSFERASE 01-JUL-08 3DMP TITLE 2.6 A CRYSTAL STRUCTURE OF URACIL PHOSPHORIBOSYLTRANSFERASE FROM TITLE 2 BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UMP PYROPHOSPHORYLASE, UPRTASE; COMPND 5 EC: 2.4.2.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PSEUDOMALLEI; SOURCE 4 ORGANISM_TAXID: 28450; SOURCE 5 STRAIN: 1710B; SOURCE 6 GENE: UPP, BPSL1166; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS BURKHOLDERIA, PSEUDOMALLEI, URACIL, PHOSPHORIBOSYLTRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, GLYCOSYLTRANSFERASE, MAGNESIUM, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 21-FEB-24 3DMP 1 SEQADV REVDAT 3 25-OCT-17 3DMP 1 REMARK REVDAT 2 24-FEB-09 3DMP 1 VERSN REVDAT 1 15-JUL-08 3DMP 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL 2.6 A CRYSTAL STRUCTURE OF URACIL PHOSPHORIBOSYLTRANSFERASE JRNL TITL 2 FROM BURKHOLDERIA PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 33305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1758 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.606 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.323 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.242 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.445 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6832 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9274 ; 1.432 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 850 ; 6.713 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 295 ;34.853 ;22.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1175 ;20.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;19.764 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1079 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5122 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2971 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4534 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 201 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4359 ; 0.581 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6917 ; 1.027 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2679 ; 1.363 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2357 ; 2.300 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.76400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NACL, 5% PEG 4000, 0.1M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.11100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.31850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.11100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.31850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -22.45648 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 140.04395 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 214 REMARK 465 LYS A 215 REMARK 465 ASN A 216 REMARK 465 THR B 214 REMARK 465 LYS B 215 REMARK 465 ASN B 216 REMARK 465 HIS C 114 REMARK 465 THR C 214 REMARK 465 LYS C 215 REMARK 465 ASN C 216 REMARK 465 THR D 214 REMARK 465 LYS D 215 REMARK 465 ASN D 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS C 134 CB CYS C 134 SG -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 44 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU D 44 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 108 86.52 -158.76 REMARK 500 ARG A 110 -75.91 -176.66 REMARK 500 ALA A 111 50.88 -62.46 REMARK 500 ASP A 113 -56.21 -144.01 REMARK 500 ALA A 139 -81.46 -82.21 REMARK 500 GLU A 159 -31.02 -39.67 REMARK 500 THR B 57 -163.62 -123.05 REMARK 500 ASP B 128 63.00 31.39 REMARK 500 ALA B 139 -75.60 -81.62 REMARK 500 ASP B 191 -167.54 -77.01 REMARK 500 THR C 57 -157.16 -112.25 REMARK 500 VAL C 138 78.94 -108.89 REMARK 500 ALA C 139 -78.14 -77.69 REMARK 500 ASP C 191 -167.68 -77.11 REMARK 500 SER D 31 136.17 -32.95 REMARK 500 ALA D 139 -78.33 -90.81 REMARK 500 ASP D 191 -168.36 -78.32 REMARK 500 LEU D 204 16.21 -158.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUPSA.00076.A RELATED DB: TARGETDB DBREF 3DMP A 1 216 UNP Q63VS8 UPP_BURPS 1 216 DBREF 3DMP B 1 216 UNP Q63VS8 UPP_BURPS 1 216 DBREF 3DMP C 1 216 UNP Q63VS8 UPP_BURPS 1 216 DBREF 3DMP D 1 216 UNP Q63VS8 UPP_BURPS 1 216 SEQADV 3DMP SER A 0 UNP Q63VS8 EXPRESSION TAG SEQADV 3DMP SER B 0 UNP Q63VS8 EXPRESSION TAG SEQADV 3DMP SER C 0 UNP Q63VS8 EXPRESSION TAG SEQADV 3DMP SER D 0 UNP Q63VS8 EXPRESSION TAG SEQRES 1 A 217 SER MET LYS GLN ASP SER ARG PHE PRO ASN LEU PHE ILE SEQRES 2 A 217 LEU ASP HIS PRO LEU ILE GLN HIS LYS LEU THR HIS MET SEQRES 3 A 217 ARG ASP LYS ASP THR SER THR ARG THR PHE ARG GLU LEU SEQRES 4 A 217 LEU ARG GLU ILE THR LEU LEU MET GLY TYR GLU ILE THR SEQRES 5 A 217 ARG ASN LEU PRO ILE THR THR LYS ARG VAL GLU THR PRO SEQRES 6 A 217 LEU VAL GLU ILE ASP ALA PRO VAL ILE ALA GLY LYS LYS SEQRES 7 A 217 LEU ALA ILE VAL PRO VAL LEU ARG ALA GLY VAL GLY MET SEQRES 8 A 217 SER ASP GLY LEU LEU GLU LEU ILE PRO SER ALA ARG VAL SEQRES 9 A 217 GLY HIS ILE GLY VAL TYR ARG ALA ASP ASP HIS ARG PRO SEQRES 10 A 217 VAL GLU TYR LEU VAL ARG LEU PRO ASP LEU GLU ASP ARG SEQRES 11 A 217 ILE PHE ILE LEU CYS ASP PRO MET VAL ALA THR GLY TYR SEQRES 12 A 217 SER ALA ALA HIS ALA ILE ASP VAL LEU LYS ARG ARG GLY SEQRES 13 A 217 VAL PRO GLY GLU ARG LEU MET PHE LEU ALA LEU VAL ALA SEQRES 14 A 217 ALA PRO GLU GLY VAL GLN VAL PHE GLN ASP ALA HIS PRO SEQRES 15 A 217 ASP VAL LYS LEU TYR VAL ALA SER LEU ASP SER HIS LEU SEQRES 16 A 217 ASP ASP HIS ALA TYR ILE VAL PRO GLY LEU GLY ASP ALA SEQRES 17 A 217 GLY ASP ARG LEU PHE GLY THR LYS ASN SEQRES 1 B 217 SER MET LYS GLN ASP SER ARG PHE PRO ASN LEU PHE ILE SEQRES 2 B 217 LEU ASP HIS PRO LEU ILE GLN HIS LYS LEU THR HIS MET SEQRES 3 B 217 ARG ASP LYS ASP THR SER THR ARG THR PHE ARG GLU LEU SEQRES 4 B 217 LEU ARG GLU ILE THR LEU LEU MET GLY TYR GLU ILE THR SEQRES 5 B 217 ARG ASN LEU PRO ILE THR THR LYS ARG VAL GLU THR PRO SEQRES 6 B 217 LEU VAL GLU ILE ASP ALA PRO VAL ILE ALA GLY LYS LYS SEQRES 7 B 217 LEU ALA ILE VAL PRO VAL LEU ARG ALA GLY VAL GLY MET SEQRES 8 B 217 SER ASP GLY LEU LEU GLU LEU ILE PRO SER ALA ARG VAL SEQRES 9 B 217 GLY HIS ILE GLY VAL TYR ARG ALA ASP ASP HIS ARG PRO SEQRES 10 B 217 VAL GLU TYR LEU VAL ARG LEU PRO ASP LEU GLU ASP ARG SEQRES 11 B 217 ILE PHE ILE LEU CYS ASP PRO MET VAL ALA THR GLY TYR SEQRES 12 B 217 SER ALA ALA HIS ALA ILE ASP VAL LEU LYS ARG ARG GLY SEQRES 13 B 217 VAL PRO GLY GLU ARG LEU MET PHE LEU ALA LEU VAL ALA SEQRES 14 B 217 ALA PRO GLU GLY VAL GLN VAL PHE GLN ASP ALA HIS PRO SEQRES 15 B 217 ASP VAL LYS LEU TYR VAL ALA SER LEU ASP SER HIS LEU SEQRES 16 B 217 ASP ASP HIS ALA TYR ILE VAL PRO GLY LEU GLY ASP ALA SEQRES 17 B 217 GLY ASP ARG LEU PHE GLY THR LYS ASN SEQRES 1 C 217 SER MET LYS GLN ASP SER ARG PHE PRO ASN LEU PHE ILE SEQRES 2 C 217 LEU ASP HIS PRO LEU ILE GLN HIS LYS LEU THR HIS MET SEQRES 3 C 217 ARG ASP LYS ASP THR SER THR ARG THR PHE ARG GLU LEU SEQRES 4 C 217 LEU ARG GLU ILE THR LEU LEU MET GLY TYR GLU ILE THR SEQRES 5 C 217 ARG ASN LEU PRO ILE THR THR LYS ARG VAL GLU THR PRO SEQRES 6 C 217 LEU VAL GLU ILE ASP ALA PRO VAL ILE ALA GLY LYS LYS SEQRES 7 C 217 LEU ALA ILE VAL PRO VAL LEU ARG ALA GLY VAL GLY MET SEQRES 8 C 217 SER ASP GLY LEU LEU GLU LEU ILE PRO SER ALA ARG VAL SEQRES 9 C 217 GLY HIS ILE GLY VAL TYR ARG ALA ASP ASP HIS ARG PRO SEQRES 10 C 217 VAL GLU TYR LEU VAL ARG LEU PRO ASP LEU GLU ASP ARG SEQRES 11 C 217 ILE PHE ILE LEU CYS ASP PRO MET VAL ALA THR GLY TYR SEQRES 12 C 217 SER ALA ALA HIS ALA ILE ASP VAL LEU LYS ARG ARG GLY SEQRES 13 C 217 VAL PRO GLY GLU ARG LEU MET PHE LEU ALA LEU VAL ALA SEQRES 14 C 217 ALA PRO GLU GLY VAL GLN VAL PHE GLN ASP ALA HIS PRO SEQRES 15 C 217 ASP VAL LYS LEU TYR VAL ALA SER LEU ASP SER HIS LEU SEQRES 16 C 217 ASP ASP HIS ALA TYR ILE VAL PRO GLY LEU GLY ASP ALA SEQRES 17 C 217 GLY ASP ARG LEU PHE GLY THR LYS ASN SEQRES 1 D 217 SER MET LYS GLN ASP SER ARG PHE PRO ASN LEU PHE ILE SEQRES 2 D 217 LEU ASP HIS PRO LEU ILE GLN HIS LYS LEU THR HIS MET SEQRES 3 D 217 ARG ASP LYS ASP THR SER THR ARG THR PHE ARG GLU LEU SEQRES 4 D 217 LEU ARG GLU ILE THR LEU LEU MET GLY TYR GLU ILE THR SEQRES 5 D 217 ARG ASN LEU PRO ILE THR THR LYS ARG VAL GLU THR PRO SEQRES 6 D 217 LEU VAL GLU ILE ASP ALA PRO VAL ILE ALA GLY LYS LYS SEQRES 7 D 217 LEU ALA ILE VAL PRO VAL LEU ARG ALA GLY VAL GLY MET SEQRES 8 D 217 SER ASP GLY LEU LEU GLU LEU ILE PRO SER ALA ARG VAL SEQRES 9 D 217 GLY HIS ILE GLY VAL TYR ARG ALA ASP ASP HIS ARG PRO SEQRES 10 D 217 VAL GLU TYR LEU VAL ARG LEU PRO ASP LEU GLU ASP ARG SEQRES 11 D 217 ILE PHE ILE LEU CYS ASP PRO MET VAL ALA THR GLY TYR SEQRES 12 D 217 SER ALA ALA HIS ALA ILE ASP VAL LEU LYS ARG ARG GLY SEQRES 13 D 217 VAL PRO GLY GLU ARG LEU MET PHE LEU ALA LEU VAL ALA SEQRES 14 D 217 ALA PRO GLU GLY VAL GLN VAL PHE GLN ASP ALA HIS PRO SEQRES 15 D 217 ASP VAL LYS LEU TYR VAL ALA SER LEU ASP SER HIS LEU SEQRES 16 D 217 ASP ASP HIS ALA TYR ILE VAL PRO GLY LEU GLY ASP ALA SEQRES 17 D 217 GLY ASP ARG LEU PHE GLY THR LYS ASN FORMUL 5 HOH *83(H2 O) HELIX 1 1 HIS A 15 ASP A 27 1 13 HELIX 2 2 SER A 31 THR A 51 1 21 HELIX 3 3 GLY A 87 ILE A 98 1 12 HELIX 4 4 GLY A 141 ARG A 153 1 13 HELIX 5 5 PRO A 157 GLU A 159 5 3 HELIX 6 6 ALA A 169 HIS A 180 1 12 HELIX 7 7 ASP A 206 GLY A 213 1 8 HELIX 8 8 HIS B 15 ASP B 27 1 13 HELIX 9 9 SER B 31 THR B 51 1 21 HELIX 10 10 ALA B 74 LYS B 76 5 3 HELIX 11 11 GLY B 87 ILE B 98 1 12 HELIX 12 12 GLY B 141 ARG B 154 1 14 HELIX 13 13 PRO B 157 GLU B 159 5 3 HELIX 14 14 ALA B 169 HIS B 180 1 12 HELIX 15 15 ASP B 206 GLY B 213 1 8 HELIX 16 16 HIS C 15 ASP C 27 1 13 HELIX 17 17 SER C 31 THR C 51 1 21 HELIX 18 18 ARG C 52 LEU C 54 5 3 HELIX 19 19 ALA C 74 LYS C 76 5 3 HELIX 20 20 GLY C 87 ILE C 98 1 12 HELIX 21 21 GLY C 141 ARG C 153 1 13 HELIX 22 22 PRO C 157 GLU C 159 5 3 HELIX 23 23 ALA C 169 HIS C 180 1 12 HELIX 24 24 ASP C 206 GLY C 213 1 8 HELIX 25 25 HIS D 15 ASP D 27 1 13 HELIX 26 26 SER D 31 THR D 51 1 21 HELIX 27 27 ALA D 74 LYS D 76 5 3 HELIX 28 28 GLY D 87 ILE D 98 1 12 HELIX 29 29 GLY D 141 ARG D 154 1 14 HELIX 30 30 PRO D 157 GLU D 159 5 3 HELIX 31 31 ALA D 169 HIS D 180 1 12 HELIX 32 32 ASP D 206 GLY D 213 1 8 SHEET 1 A 7 MET A 1 LYS A 2 0 SHEET 2 A 7 LEU A 10 LEU A 13 -1 O ILE A 12 N LYS A 2 SHEET 3 A 7 LYS A 184 VAL A 187 1 O VAL A 187 N LEU A 13 SHEET 4 A 7 LEU A 161 LEU A 164 1 N PHE A 163 O TYR A 186 SHEET 5 A 7 ILE A 130 CYS A 134 1 N LEU A 133 O MET A 162 SHEET 6 A 7 LEU A 78 LEU A 84 1 N ALA A 79 O ILE A 132 SHEET 7 A 7 ARG A 102 VAL A 103 1 O ARG A 102 N ILE A 80 SHEET 1 B 8 MET A 1 LYS A 2 0 SHEET 2 B 8 LEU A 10 LEU A 13 -1 O ILE A 12 N LYS A 2 SHEET 3 B 8 LYS A 184 VAL A 187 1 O VAL A 187 N LEU A 13 SHEET 4 B 8 LEU A 161 LEU A 164 1 N PHE A 163 O TYR A 186 SHEET 5 B 8 ILE A 130 CYS A 134 1 N LEU A 133 O MET A 162 SHEET 6 B 8 LEU A 78 LEU A 84 1 N ALA A 79 O ILE A 132 SHEET 7 B 8 HIS A 105 GLY A 107 1 O ILE A 106 N LEU A 84 SHEET 8 B 8 LEU A 120 ARG A 122 -1 O LEU A 120 N GLY A 107 SHEET 1 C 2 ILE A 56 GLU A 62 0 SHEET 2 C 2 GLU A 67 ILE A 73 -1 O VAL A 72 N THR A 57 SHEET 1 D 3 MET A 137 VAL A 138 0 SHEET 2 D 3 VAL A 167 ALA A 168 1 O VAL A 167 N VAL A 138 SHEET 3 D 3 SER A 189 LEU A 190 1 O SER A 189 N ALA A 168 SHEET 1 E 2 HIS A 193 LEU A 194 0 SHEET 2 E 2 ILE A 200 VAL A 201 -1 O VAL A 201 N HIS A 193 SHEET 1 F 7 MET B 1 LYS B 2 0 SHEET 2 F 7 LEU B 10 LEU B 13 -1 O ILE B 12 N LYS B 2 SHEET 3 F 7 LYS B 184 VAL B 187 1 O VAL B 187 N LEU B 13 SHEET 4 F 7 LEU B 161 LEU B 164 1 N PHE B 163 O TYR B 186 SHEET 5 F 7 ILE B 130 CYS B 134 1 N LEU B 133 O MET B 162 SHEET 6 F 7 LEU B 78 LEU B 84 1 N VAL B 81 O ILE B 132 SHEET 7 F 7 ARG B 102 VAL B 103 1 O ARG B 102 N ILE B 80 SHEET 1 G 8 MET B 1 LYS B 2 0 SHEET 2 G 8 LEU B 10 LEU B 13 -1 O ILE B 12 N LYS B 2 SHEET 3 G 8 LYS B 184 VAL B 187 1 O VAL B 187 N LEU B 13 SHEET 4 G 8 LEU B 161 LEU B 164 1 N PHE B 163 O TYR B 186 SHEET 5 G 8 ILE B 130 CYS B 134 1 N LEU B 133 O MET B 162 SHEET 6 G 8 LEU B 78 LEU B 84 1 N VAL B 81 O ILE B 132 SHEET 7 G 8 HIS B 105 VAL B 108 1 O ILE B 106 N LEU B 84 SHEET 8 G 8 GLU B 118 ARG B 122 -1 O LEU B 120 N GLY B 107 SHEET 1 H 2 THR B 57 GLU B 62 0 SHEET 2 H 2 GLU B 67 VAL B 72 -1 O VAL B 72 N THR B 57 SHEET 1 I 3 MET B 137 VAL B 138 0 SHEET 2 I 3 VAL B 167 ALA B 168 1 O VAL B 167 N VAL B 138 SHEET 3 I 3 SER B 189 LEU B 190 1 O SER B 189 N ALA B 168 SHEET 1 J 2 HIS B 193 LEU B 194 0 SHEET 2 J 2 ILE B 200 VAL B 201 -1 O VAL B 201 N HIS B 193 SHEET 1 K 7 MET C 1 LYS C 2 0 SHEET 2 K 7 LEU C 10 LEU C 13 -1 O ILE C 12 N LYS C 2 SHEET 3 K 7 LYS C 184 VAL C 187 1 O VAL C 187 N LEU C 13 SHEET 4 K 7 LEU C 161 LEU C 164 1 N PHE C 163 O TYR C 186 SHEET 5 K 7 ILE C 130 CYS C 134 1 N LEU C 133 O MET C 162 SHEET 6 K 7 LEU C 78 LEU C 84 1 N VAL C 81 O ILE C 132 SHEET 7 K 7 ARG C 102 VAL C 103 1 O ARG C 102 N ILE C 80 SHEET 1 L 8 MET C 1 LYS C 2 0 SHEET 2 L 8 LEU C 10 LEU C 13 -1 O ILE C 12 N LYS C 2 SHEET 3 L 8 LYS C 184 VAL C 187 1 O VAL C 187 N LEU C 13 SHEET 4 L 8 LEU C 161 LEU C 164 1 N PHE C 163 O TYR C 186 SHEET 5 L 8 ILE C 130 CYS C 134 1 N LEU C 133 O MET C 162 SHEET 6 L 8 LEU C 78 LEU C 84 1 N VAL C 81 O ILE C 132 SHEET 7 L 8 HIS C 105 TYR C 109 1 O ILE C 106 N LEU C 84 SHEET 8 L 8 VAL C 117 ARG C 122 -1 O VAL C 117 N TYR C 109 SHEET 1 M 2 THR C 57 GLU C 62 0 SHEET 2 M 2 GLU C 67 VAL C 72 -1 O ALA C 70 N LYS C 59 SHEET 1 N 3 MET C 137 VAL C 138 0 SHEET 2 N 3 VAL C 167 ALA C 168 1 O VAL C 167 N VAL C 138 SHEET 3 N 3 SER C 189 LEU C 190 1 O SER C 189 N ALA C 168 SHEET 1 O 2 HIS C 193 LEU C 194 0 SHEET 2 O 2 ILE C 200 VAL C 201 -1 O VAL C 201 N HIS C 193 SHEET 1 P 7 MET D 1 LYS D 2 0 SHEET 2 P 7 LEU D 10 LEU D 13 -1 O ILE D 12 N LYS D 2 SHEET 3 P 7 LYS D 184 VAL D 187 1 O VAL D 187 N LEU D 13 SHEET 4 P 7 LEU D 161 LEU D 164 1 N PHE D 163 O TYR D 186 SHEET 5 P 7 ILE D 130 CYS D 134 1 N LEU D 133 O LEU D 164 SHEET 6 P 7 LEU D 78 LEU D 84 1 N VAL D 83 O CYS D 134 SHEET 7 P 7 ARG D 102 VAL D 103 1 O ARG D 102 N ILE D 80 SHEET 1 Q 8 MET D 1 LYS D 2 0 SHEET 2 Q 8 LEU D 10 LEU D 13 -1 O ILE D 12 N LYS D 2 SHEET 3 Q 8 LYS D 184 VAL D 187 1 O VAL D 187 N LEU D 13 SHEET 4 Q 8 LEU D 161 LEU D 164 1 N PHE D 163 O TYR D 186 SHEET 5 Q 8 ILE D 130 CYS D 134 1 N LEU D 133 O LEU D 164 SHEET 6 Q 8 LEU D 78 LEU D 84 1 N VAL D 83 O CYS D 134 SHEET 7 Q 8 HIS D 105 ARG D 110 1 O ILE D 106 N LEU D 84 SHEET 8 Q 8 PRO D 116 ARG D 122 -1 O ARG D 122 N HIS D 105 SHEET 1 R 2 THR D 57 GLU D 62 0 SHEET 2 R 2 GLU D 67 VAL D 72 -1 O VAL D 72 N THR D 57 SHEET 1 S 3 MET D 137 VAL D 138 0 SHEET 2 S 3 VAL D 167 ALA D 168 1 O VAL D 167 N VAL D 138 SHEET 3 S 3 SER D 189 LEU D 190 1 O SER D 189 N ALA D 168 SHEET 1 T 2 HIS D 193 LEU D 194 0 SHEET 2 T 2 ILE D 200 VAL D 201 -1 O VAL D 201 N HIS D 193 CISPEP 1 LEU A 84 ARG A 85 0 -3.41 CISPEP 2 TYR A 109 ARG A 110 0 -29.89 CISPEP 3 VAL A 201 PRO A 202 0 0.11 CISPEP 4 LEU B 84 ARG B 85 0 -5.88 CISPEP 5 VAL B 201 PRO B 202 0 -6.52 CISPEP 6 LEU C 84 ARG C 85 0 -7.92 CISPEP 7 VAL C 201 PRO C 202 0 -2.03 CISPEP 8 LEU D 84 ARG D 85 0 0.42 CISPEP 9 VAL D 201 PRO D 202 0 0.34 CRYST1 102.222 80.637 141.833 90.00 99.11 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009783 0.000000 0.001569 0.00000 SCALE2 0.000000 0.012401 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007141 0.00000