HEADER ENDONUCLEASE 20-AUG-92 3DNI TITLE CRYSTALLOGRAPHIC REFINEMENT AND STRUCTURE OF DNASE I AT 2 ANGSTROMS TITLE 2 RESOLUTION CAVEAT 3DNI NAG B 2 HAS WRONG CHIRALITY AT ATOM C3 MAN B 6 HAS WRONG CAVEAT 2 3DNI CHIRALITY AT ATOM C3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBONUCLEASE I; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.21.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 TISSUE: PANCREAS KEYWDS ENDONUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR C.OEFNER,D.SUCK REVDAT 9 23-OCT-24 3DNI 1 HETSYN REVDAT 8 29-JUL-20 3DNI 1 CAVEAT COMPND REMARK HETNAM REVDAT 8 2 1 LINK SITE ATOM REVDAT 7 29-NOV-17 3DNI 1 HELIX REVDAT 6 13-JUL-11 3DNI 1 VERSN REVDAT 5 25-AUG-09 3DNI 1 SOURCE REVDAT 4 11-AUG-09 3DNI 1 HETATM REVDAT 3 24-FEB-09 3DNI 1 VERSN REVDAT 2 01-APR-03 3DNI 1 JRNL REVDAT 1 31-JAN-94 3DNI 0 JRNL AUTH C.OEFNER,D.SUCK JRNL TITL CRYSTALLOGRAPHIC REFINEMENT AND STRUCTURE OF DNASE I AT 2 A JRNL TITL 2 RESOLUTION. JRNL REF J.MOL.BIOL. V. 192 605 1986 JRNL REFN ISSN 0022-2836 JRNL PMID 3560229 JRNL DOI 10.1016/0022-2836(86)90280-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.A.WESTON,A.LAHM,D.SUCK REMARK 1 TITL X-RAY STRUCTURE OF THE DNASE I-D(GGTATACC)2 COMPLEX AT 2.3 REMARK 1 TITL 2 ANGSTROMS RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 226 1237 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.LAHM,D.SUCK REMARK 1 TITL DNASE I-INDUCED DNA CONFORMATION. 2 ANGSTROMS STRUCTURE OF A REMARK 1 TITL 2 DNASE I-OCTAMER COMPLEX REMARK 1 REF J.MOL.BIOL. V. 221 645 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.SUCK,A.LAHM,C.OEFNER REMARK 1 TITL STRUCTURE REFINED TO 2 ANGSTROMS OF A NICKED DNA REMARK 1 TITL 2 OCTANUCLEOTIDE COMPLEX WITH DNASE I REMARK 1 REF NATURE V. 332 465 1988 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 4 REMARK 1 AUTH D.SUCK,C.OEFNER REMARK 1 TITL STRUCTURE OF DNASE I AT 2.0 ANGSTROMS RESOLUTION SUGGESTS A REMARK 1 TITL 2 MECHANISM FOR BINDING TO AND CUTTING DNA REMARK 1 REF NATURE V. 321 620 1986 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 5 REMARK 1 AUTH D.SUCK,C.OEFNER,W.KABSCH REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF BOVINE PANCREATIC DNASE I AT REMARK 1 TITL 2 2.5 ANGSTROMS RESOLUTION REMARK 1 REF EMBO J. V. 3 2423 1984 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 6 REMARK 1 AUTH D.SUCK REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC DATA OF REMARK 1 TITL 2 BOVINE PANCREATIC DEOXYRIBONUCLEASE I REMARK 1 REF J.MOL.BIOL. V. 162 511 1982 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 7 REMARK 1 AUTH T.-H.LIAO,J.SALNIKOW,S.MOORE,W.H.STEIN REMARK 1 TITL BOVINE PANCREATIC DEOXYRIBONUCLEASEA. ISOLATION OF CYANOGEN REMARK 1 TITL 2 BROMIDE PEPTIDES, COMPLETE COVALENT STRUCTURE OF THE REMARK 1 TITL 3 POLYPEPTIDE CHAIN REMARK 1 REF J.BIOL.CHEM. V. 248 1489 1973 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2034 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 375 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.023 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.030 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.030 ; 0.040 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.019 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.143 ; 0.100 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.183 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.177 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.213 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.100 ; 2.000 REMARK 3 STAGGERED (DEGREES) : 19.700; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.160 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.910 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.510 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.340 ; 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3DNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -132.53820 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.38854 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 102 REMARK 465 SER A 103 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 429 O HOH A 430 2.14 REMARK 500 C4 NAG B 2 O2 BMA B 3 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 618 O HOH A 618 2556 1.82 REMARK 500 O HOH A 368 O HOH A 368 2456 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 143 CD GLU A 143 OE2 -0.086 REMARK 500 SER A 178 CB SER A 178 OG 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 9 CD - NE - CZ ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 9 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLU A 13 OE1 - CD - OE2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 27 CD - NE - CZ ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR A 32 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 33 CB - CG - OD1 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP A 33 CB - CG - OD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 41 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 63 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR A 63 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 73 NH1 - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 73 NE - CZ - NH1 ANGL. DEV. = -7.2 DEGREES REMARK 500 LYS A 77 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 VAL A 89 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 ASP A 99 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 99 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 HIS A 121 CA - CB - CG ANGL. DEV. = 20.7 DEGREES REMARK 500 VAL A 125 CG1 - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 GLU A 127 CA - CB - CG ANGL. DEV. = 25.8 DEGREES REMARK 500 GLU A 143 OE1 - CD - OE2 ANGL. DEV. = 24.5 DEGREES REMARK 500 GLU A 143 CG - CD - OE1 ANGL. DEV. = -20.6 DEGREES REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 162 CB - CG - OD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 MET A 164 CG - SD - CE ANGL. DEV. = 11.6 DEGREES REMARK 500 MET A 166 N - CA - CB ANGL. DEV. = -16.1 DEGREES REMARK 500 MET A 166 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 MET A 166 CG - SD - CE ANGL. DEV. = 11.2 DEGREES REMARK 500 GLY A 167 O - C - N ANGL. DEV. = 10.4 DEGREES REMARK 500 PHE A 169 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE A 169 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 SER A 178 CA - CB - OG ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 187 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 187 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP A 212 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 234 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 251 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 251 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 GLU A 256 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 80.44 -155.48 REMARK 500 ASN A 74 -124.18 -85.56 REMARK 500 ALA A 171 38.87 -75.47 REMARK 500 CYS A 173 -126.32 55.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 282 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD2 REMARK 620 2 ASP A 107 OD2 67.5 REMARK 620 3 PHE A 109 O 73.3 69.6 REMARK 620 4 SER A 110 O 140.1 120.4 74.2 REMARK 620 5 GLU A 112 OE1 94.7 156.0 122.2 83.6 REMARK 620 6 HOH A 408 O 80.0 64.0 132.5 139.9 98.2 REMARK 620 7 HOH A 409 O 154.1 87.5 105.2 58.6 107.0 83.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 281 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD2 REMARK 620 2 ASP A 201 OD1 52.7 REMARK 620 3 THR A 203 OG1 129.1 76.4 REMARK 620 4 THR A 203 O 110.0 86.8 60.7 REMARK 620 5 THR A 205 O 151.9 155.0 78.9 84.6 REMARK 620 6 THR A 207 O 101.6 85.4 72.1 132.7 83.4 REMARK 620 7 HOH A 355 O 82.2 122.4 132.7 76.5 78.0 143.6 REMARK 620 8 HOH A 356 O 77.4 118.4 137.9 149.5 78.4 70.4 75.4 REMARK 620 N 1 2 3 4 5 6 7 DBREF 3DNI A 1 260 UNP P00639 DRN1_BOVIN 23 282 SEQRES 1 A 260 LEU LYS ILE ALA ALA PHE ASN ILE ARG THR PHE GLY GLU SEQRES 2 A 260 THR LYS MET SER ASN ALA THR LEU ALA SER TYR ILE VAL SEQRES 3 A 260 ARG ILE VAL ARG ARG TYR ASP ILE VAL LEU ILE GLN GLU SEQRES 4 A 260 VAL ARG ASP SER HIS LEU VAL ALA VAL GLY LYS LEU LEU SEQRES 5 A 260 ASP TYR LEU ASN GLN ASP ASP PRO ASN THR TYR HIS TYR SEQRES 6 A 260 VAL VAL SER GLU PRO LEU GLY ARG ASN SER TYR LYS GLU SEQRES 7 A 260 ARG TYR LEU PHE LEU PHE ARG PRO ASN LYS VAL SER VAL SEQRES 8 A 260 LEU ASP THR TYR GLN TYR ASP ASP GLY CYS GLU SER CYS SEQRES 9 A 260 GLY ASN ASP SER PHE SER ARG GLU PRO ALA VAL VAL LYS SEQRES 10 A 260 PHE SER SER HIS SER THR LYS VAL LYS GLU PHE ALA ILE SEQRES 11 A 260 VAL ALA LEU HIS SER ALA PRO SER ASP ALA VAL ALA GLU SEQRES 12 A 260 ILE ASN SER LEU TYR ASP VAL TYR LEU ASP VAL GLN GLN SEQRES 13 A 260 LYS TRP HIS LEU ASN ASP VAL MET LEU MET GLY ASP PHE SEQRES 14 A 260 ASN ALA ASP CYS SER TYR VAL THR SER SER GLN TRP SER SEQRES 15 A 260 SER ILE ARG LEU ARG THR SER SER THR PHE GLN TRP LEU SEQRES 16 A 260 ILE PRO ASP SER ALA ASP THR THR ALA THR SER THR ASN SEQRES 17 A 260 CYS ALA TYR ASP ARG ILE VAL VAL ALA GLY SER LEU LEU SEQRES 18 A 260 GLN SER SER VAL VAL PRO GLY SER ALA ALA PRO PHE ASP SEQRES 19 A 260 PHE GLN ALA ALA TYR GLY LEU SER ASN GLU MET ALA LEU SEQRES 20 A 260 ALA ILE SER ASP HIS TYR PRO VAL GLU VAL THR LEU THR MODRES 3DNI ASN A 18 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET BMA B 4 11 HET GLA B 5 11 HET MAN B 6 11 HET BMA B 7 11 HET CA A 281 1 HET CA A 282 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 2 GLA C6 H12 O6 FORMUL 2 MAN C6 H12 O6 FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *375(H2 O) HELIX 1 H1 GLU A 13 MET A 16 1 4 HELIX 2 H2 ALA A 19 ARG A 30 1 12 HELIX 3 H3 VAL A 46 LEU A 55 1 10 HELIX 4 H4A ASP A 139 LEU A 147 1 9 HELIX 5 H4B TYR A 148 TRP A 158 1CONTIGUOUS WITH HELIX H4A 11 HELIX 6 H5 ARG A 185 THR A 188 1 4 HELIX 7 H6 SER A 219 SER A 224 1 6 HELIX 8 H7 PHE A 235 TYR A 239 1 5 HELIX 9 H8 ASN A 243 ILE A 249 1 7 SHEET 1 S1 6 ALA A 231 PRO A 232 0 SHEET 2 S1 6 VAL A 255 LEU A 259 -1 O GLU A 256 N ALA A 231 SHEET 3 S1 6 LYS A 2 PHE A 11 -1 O ALA A 5 N VAL A 255 SHEET 4 S1 6 ILE A 34 VAL A 40 1 O LEU A 36 N PHE A 6 SHEET 5 S1 6 ARG A 79 PHE A 84 -1 O LEU A 81 N ILE A 37 SHEET 6 S1 6 HIS A 64 VAL A 67 -1 O VAL A 66 N PHE A 82 SHEET 1 S2 6 VAL A 89 GLN A 96 0 SHEET 2 S2 6 ALA A 114 SER A 120 -1 O VAL A 115 N TYR A 95 SHEET 3 S2 6 LYS A 126 ALA A 132 -1 O ILE A 130 N VAL A 116 SHEET 4 S2 6 VAL A 163 ASP A 168 1 O MET A 166 N VAL A 131 SHEET 5 S2 6 ASP A 212 ALA A 217 -1 O VAL A 215 N LEU A 165 SHEET 6 S2 6 GLN A 193 TRP A 194 -1 O GLN A 193 N VAL A 216 SSBOND 1 CYS A 101 CYS A 104 1555 1555 2.01 SSBOND 2 CYS A 173 CYS A 209 1555 1555 2.04 LINK ND2 ASN A 18 C1 NAG B 1 1555 1555 1.50 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.48 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.40 LINK O3 BMA B 3 C1 BMA B 4 1555 1555 1.44 LINK O6 BMA B 3 C1 MAN B 6 1555 1555 1.44 LINK O6 BMA B 4 C1 GLA B 5 1555 1555 1.53 LINK O6 MAN B 6 C1 BMA B 7 1555 1555 1.41 LINK OD2 ASP A 99 CA CA A 282 1555 1555 2.80 LINK OD2 ASP A 107 CA CA A 282 1555 1555 2.57 LINK O PHE A 109 CA CA A 282 1555 1555 2.21 LINK O SER A 110 CA CA A 282 1555 1555 3.30 LINK OE1 GLU A 112 CA CA A 282 1555 1555 2.16 LINK OD2 ASP A 201 CA CA A 281 1555 1555 2.40 LINK OD1 ASP A 201 CA CA A 281 1555 1555 2.57 LINK OG1 THR A 203 CA CA A 281 1555 1555 2.91 LINK O THR A 203 CA CA A 281 1555 1555 2.53 LINK O THR A 205 CA CA A 281 1555 1555 2.80 LINK O THR A 207 CA CA A 281 1555 1555 2.46 LINK CA CA A 281 O HOH A 355 1555 1555 2.62 LINK CA CA A 281 O HOH A 356 1555 1555 2.72 LINK CA CA A 282 O HOH A 408 1555 1555 2.69 LINK CA CA A 282 O HOH A 409 1555 1555 2.28 CRYST1 131.600 54.900 38.400 90.00 91.40 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007599 0.000000 0.000186 0.00000 SCALE2 0.000000 0.018215 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026049 0.00000