HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-JUL-08 3DNX TITLE SPO1766 PROTEIN OF UNKNOWN FUNCTION FROM SILICIBACTER POMEROYI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN SPO1766; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI; SOURCE 3 ORGANISM_TAXID: 89184; SOURCE 4 STRAIN: DSS-3; SOURCE 5 GENE: SPO1766; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19B KEYWDS STRUCTURAL GENOMICS, APC88088, PROTEIN OF UNKNOWN FUNCTION, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,R.MULLIGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 3DNX 1 REMARK REVDAT 3 13-JUL-11 3DNX 1 VERSN REVDAT 2 24-FEB-09 3DNX 1 VERSN REVDAT 1 02-SEP-08 3DNX 0 JRNL AUTH J.OSIPIUK,R.MULLIGAN,S.CLANCY,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF SPO1766 PROTEIN OF UNKNOWN JRNL TITL 2 FUNCTION FROM SILICIBACTER POMEROYI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 698 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1166 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.068 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1240 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 884 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1687 ; 1.523 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2133 ; 0.960 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 158 ; 6.134 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;32.359 ;22.923 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 213 ;18.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;24.457 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1415 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 275 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 241 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 920 ; 0.209 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 569 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 686 ; 0.094 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.230 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.122 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.115 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.317 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.110 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 748 ; 0.892 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 301 ; 0.237 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1197 ; 1.572 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 514 ; 2.317 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 483 ; 3.770 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8063 29.9052 7.6245 REMARK 3 T TENSOR REMARK 3 T11: 0.0517 T22: 0.1414 REMARK 3 T33: 0.1978 T12: -0.0038 REMARK 3 T13: 0.0116 T23: 0.1033 REMARK 3 L TENSOR REMARK 3 L11: 31.3298 L22: 21.6327 REMARK 3 L33: 43.1788 L12: -0.9618 REMARK 3 L13: 5.2594 L23: -22.5525 REMARK 3 S TENSOR REMARK 3 S11: 0.5557 S12: -0.6166 S13: -3.8593 REMARK 3 S21: -1.2913 S22: -0.1367 S23: -1.2069 REMARK 3 S31: 3.3075 S32: 1.4024 S33: -0.4190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6190 45.8954 6.8117 REMARK 3 T TENSOR REMARK 3 T11: -0.1152 T22: 0.0853 REMARK 3 T33: -0.0292 T12: -0.0196 REMARK 3 T13: 0.0277 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 3.9730 L22: 2.9847 REMARK 3 L33: 0.5464 L12: 0.4478 REMARK 3 L13: -0.6939 L23: -1.1952 REMARK 3 S TENSOR REMARK 3 S11: 0.1733 S12: -0.8216 S13: 0.5179 REMARK 3 S21: 0.4597 S22: -0.0267 S23: -0.0702 REMARK 3 S31: -0.1151 S32: 0.1884 S33: -0.1466 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4914 46.7273 3.8982 REMARK 3 T TENSOR REMARK 3 T11: -0.1836 T22: 0.0119 REMARK 3 T33: -0.1394 T12: -0.0096 REMARK 3 T13: 0.0325 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 4.9350 L22: 1.1757 REMARK 3 L33: 2.4089 L12: -1.9668 REMARK 3 L13: -0.1060 L23: 1.0133 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.2492 S13: 0.4201 REMARK 3 S21: -0.3369 S22: 0.0601 S23: 0.0173 REMARK 3 S31: -0.0742 S32: -0.0596 S33: -0.0783 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5875 50.2373 4.9116 REMARK 3 T TENSOR REMARK 3 T11: -0.2198 T22: 0.0243 REMARK 3 T33: -0.0431 T12: -0.0487 REMARK 3 T13: 0.0286 T23: -0.0861 REMARK 3 L TENSOR REMARK 3 L11: 3.8905 L22: 10.4853 REMARK 3 L33: 0.1556 L12: -1.8572 REMARK 3 L13: -0.7772 L23: 0.4262 REMARK 3 S TENSOR REMARK 3 S11: 0.2154 S12: -0.5945 S13: 0.6081 REMARK 3 S21: -0.0358 S22: -0.0579 S23: -0.0339 REMARK 3 S31: 0.2182 S32: 0.2330 S33: -0.1574 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 68.3958 34.8018 8.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.0711 REMARK 3 T33: -0.0131 T12: -0.0002 REMARK 3 T13: 0.0016 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 6.5571 L22: 2.9481 REMARK 3 L33: 12.8906 L12: 4.3967 REMARK 3 L13: 9.1937 L23: 6.1647 REMARK 3 S TENSOR REMARK 3 S11: 0.1311 S12: -0.7367 S13: 0.4592 REMARK 3 S21: 0.4537 S22: -0.3304 S23: 0.2778 REMARK 3 S31: -0.8539 S32: -0.6653 S33: 0.1993 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3DNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14100 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, DM, SOLVE, RESOLVE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M SODIUM CHLORIDE, 0.1 M REMARK 280 SODIUM/POTASSIUM PHOSPHATE BUFFER, PH 6.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.93400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.96700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.90100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.93400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.90100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 24.96700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PUTATIVE BIOLOGICAL UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 119.78400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 246 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 273 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 292 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 MSE A 3 REMARK 465 THR A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 214 O HOH A 287 1.90 REMARK 500 OH TYR A 72 O HOH A 307 2.19 REMARK 500 O HOH A 312 O HOH A 313 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 84 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 6 71.65 -102.17 REMARK 500 ASP A 66 41.29 -93.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 56 O REMARK 620 2 ASP A 62 OD2 82.1 REMARK 620 3 HOH A 299 O 88.9 153.8 REMARK 620 4 HOH A 244 O 87.2 103.1 100.9 REMARK 620 5 HOH A 306 O 165.4 85.5 105.6 88.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88088 RELATED DB: TARGETDB DBREF 3DNX A 1 150 UNP Q5LSK1 Q5LSK1_SILPO 1 150 SEQADV 3DNX SER A -2 UNP Q5LSK1 EXPRESSION TAG SEQADV 3DNX ASN A -1 UNP Q5LSK1 EXPRESSION TAG SEQADV 3DNX ALA A 0 UNP Q5LSK1 EXPRESSION TAG SEQRES 1 A 153 SER ASN ALA MSE PRO MSE THR LEU ASP LEU GLN PRO GLY SEQRES 2 A 153 GLN ARG LEU ALA ARG GLY VAL ALA ARG HIS LEU ARG ALA SEQRES 3 A 153 HIS GLY PHE VAL SER VAL GLU GLU PHE VAL PRO ALA ARG SEQRES 4 A 153 GLY LEU ARG VAL ASP VAL MSE GLY LEU GLY PRO LYS GLY SEQRES 5 A 153 GLU ILE TRP VAL ILE GLU CYS LYS SER SER ARG ALA ASP SEQRES 6 A 153 PHE GLN ALA ASP ALA LYS TRP GLN GLY TYR LEU GLU TRP SEQRES 7 A 153 CYS ASP ARG TYR PHE TRP ALA VAL ASP MSE GLU PHE PRO SEQRES 8 A 153 ALA GLU LEU LEU PRO ALA GLU SER GLY LEU LEU ILE ALA SEQRES 9 A 153 ASP ALA TYR ASP ALA GLU ILE VAL ARG MSE ALA PRO GLU SEQRES 10 A 153 GLN LYS LEU ALA PRO ALA ARG ARG LYS VAL LEU ILE GLN SEQRES 11 A 153 LYS PHE ALA THR HIS ALA ALA ARG ARG LEU GLN ALA LEU SEQRES 12 A 153 ARG ASP PRO GLU GLY HIS GLY ILE PHE GLU MODRES 3DNX MSE A 43 MET SELENOMETHIONINE MODRES 3DNX MSE A 85 MET SELENOMETHIONINE MODRES 3DNX MSE A 111 MET SELENOMETHIONINE HET MSE A 43 8 HET MSE A 85 13 HET MSE A 111 8 HET NA A 201 1 HET NA A 202 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 NA 2(NA 1+) FORMUL 4 HOH *121(H2 O) HELIX 1 1 GLN A 8 HIS A 24 1 17 HELIX 2 2 SER A 59 ASP A 66 1 8 HELIX 3 3 ALA A 67 CYS A 76 5 10 HELIX 4 4 PRO A 88 LEU A 92 5 5 HELIX 5 5 ALA A 118 ASP A 142 1 25 SHEET 1 A 6 VAL A 27 PHE A 32 0 SHEET 2 A 6 VAL A 40 LEU A 45 -1 O VAL A 40 N PHE A 32 SHEET 3 A 6 ILE A 51 CYS A 56 -1 O TRP A 52 N GLY A 44 SHEET 4 A 6 ARG A 78 VAL A 83 1 O PHE A 80 N VAL A 53 SHEET 5 A 6 GLY A 97 ALA A 101 1 O ALA A 101 N VAL A 83 SHEET 6 A 6 ALA A 106 ARG A 110 -1 O ARG A 110 N LEU A 98 LINK C VAL A 42 N MSE A 43 1555 1555 1.34 LINK C MSE A 43 N GLY A 44 1555 1555 1.34 LINK C ASP A 84 N MSE A 85 1555 1555 1.32 LINK C MSE A 85 N GLU A 86 1555 1555 1.34 LINK C ARG A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N ALA A 112 1555 1555 1.33 LINK O CYS A 56 NA NA A 202 1555 1555 2.52 LINK OD2 ASP A 62 NA NA A 202 1555 1555 2.42 LINK NA NA A 202 O HOH A 299 1555 1555 2.23 LINK NA NA A 202 O HOH A 244 1555 1555 2.33 LINK NA NA A 202 O HOH A 306 1555 1555 2.33 SITE 1 AC1 2 GLU A 30 HIS A 132 SITE 1 AC2 6 ASP A 41 CYS A 56 ASP A 62 HOH A 244 SITE 2 AC2 6 HOH A 299 HOH A 306 CRYST1 59.892 59.892 99.868 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016697 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010013 0.00000