HEADER OXIDOREDUCTASE 03-JUL-08 3DO5 TITLE CRYSTAL STRUCTURE OF PUTATIVE HOMOSERINE DEHYDROGENASE (NP_069768.1) TITLE 2 FROM ARCHAEOGLOBUS FULGIDUS AT 2.20 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSERINE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HOM; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_COMMON: ARCHAEA; SOURCE 4 ORGANISM_TAXID: 2234; SOURCE 5 GENE: NP_069768.1, AF_0935; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS NP_069768.1, PUTATIVE HOMOSERINE DEHYDROGENASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 30-OCT-24 3DO5 1 REMARK REVDAT 6 01-FEB-23 3DO5 1 REMARK SEQADV REVDAT 5 24-JUL-19 3DO5 1 REMARK LINK REVDAT 4 25-OCT-17 3DO5 1 REMARK REVDAT 3 13-JUL-11 3DO5 1 VERSN REVDAT 2 24-FEB-09 3DO5 1 VERSN REVDAT 1 02-SEP-08 3DO5 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE HOMOSERINE DEHYDROGENASE JRNL TITL 2 (NP_069768.1) FROM ARCHAEOGLOBUS FULGIDUS AT 2.20 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1104 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 47.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32000 REMARK 3 B22 (A**2) : -3.48000 REMARK 3 B33 (A**2) : 2.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2471 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1647 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3343 ; 1.810 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4041 ; 0.999 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 4.010 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;34.807 ;23.820 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 431 ;12.397 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.439 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 479 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 476 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1709 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1225 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1270 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.123 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.248 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.183 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1772 ; 2.075 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 665 ; 0.438 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2563 ; 3.041 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 940 ; 5.576 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 779 ; 6.754 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 324 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4502 15.1266 -3.4190 REMARK 3 T TENSOR REMARK 3 T11: -0.1164 T22: -0.2210 REMARK 3 T33: -0.1512 T12: -0.0033 REMARK 3 T13: 0.0341 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.6586 L22: 2.1952 REMARK 3 L33: 2.1886 L12: 1.3809 REMARK 3 L13: 1.1753 L23: 0.8912 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: -0.0965 S13: 0.0578 REMARK 3 S21: 0.1027 S22: 0.0692 S23: -0.2271 REMARK 3 S31: -0.0439 S32: 0.0012 S33: -0.1422 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 4. PEG300 FRAGMENTS (PEG) AND PHOSPHATE WERE MODELED BASED REMARK 3 ON CRYSTALLIZATION CONDITIONS. REMARK 4 REMARK 4 3DO5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000048279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21542 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 28.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 10.0% GLYCEROL, REMARK 280 20.0% POLYETHYLENE GLYCOL 300, 0.1M PHOSPHATE-CITRATE PH 4.2, REMARK 280 NANODROP', VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.94300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.94300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 59.55350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.40900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 59.55350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.40900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.94300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 59.55350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.40900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.94300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 59.55350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.40900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE PROTOMER MAY FORM A DIMER BASED ON REMARK 300 CRYSTAL PACKING ANALYSIS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 VAL A 91 REMARK 465 ASP A 92 REMARK 465 GLY A 93 REMARK 465 GLY A 94 REMARK 465 PRO A 325 REMARK 465 ARG A 326 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 24 NE CZ NH1 NH2 REMARK 470 GLU A 25 OE1 OE2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 ARG A 57 NE CZ NH1 NH2 REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ARG A 90 CD NE CZ NH1 NH2 REMARK 470 GLU A 95 OE1 OE2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 ARG A 131 CZ NH1 NH2 REMARK 470 LYS A 165 NZ REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS A 191 CD CE NZ REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 GLU A 200 OE1 OE2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 LYS A 251 NZ REMARK 470 ARG A 263 CD NE CZ NH1 NH2 REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 LYS A 291 NZ REMARK 470 ARG A 303 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 159 CB CYS A 159 SG -0.096 REMARK 500 MSE A 285 SE MSE A 285 CE 0.355 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 285 CG - SE - CE ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 41 -157.73 -107.52 REMARK 500 LEU A 65 -156.72 -103.65 REMARK 500 GLU A 121 43.32 -147.71 REMARK 500 TYR A 138 30.59 -151.81 REMARK 500 VAL A 148 -49.97 -146.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 329 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378947 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3DO5 A 1 326 UNP O29327 O29327_ARCFU 1 326 SEQADV 3DO5 GLY A 0 UNP O29327 EXPRESSION TAG SEQRES 1 A 327 GLY MSE ILE LYS ILE ALA ILE VAL GLY PHE GLY THR VAL SEQRES 2 A 327 GLY GLN GLY VAL ALA GLU LEU LEU ILE ARG LYS ARG GLU SEQRES 3 A 327 GLU ILE GLU LYS ALA ILE GLY GLU PHE LYS VAL THR ALA SEQRES 4 A 327 VAL ALA ASP SER LYS SER SER ILE SER GLY ASP PHE SER SEQRES 5 A 327 LEU VAL GLU ALA LEU ARG MSE LYS ARG GLU THR GLY MSE SEQRES 6 A 327 LEU ARG ASP ASP ALA LYS ALA ILE GLU VAL VAL ARG SER SEQRES 7 A 327 ALA ASP TYR ASP VAL LEU ILE GLU ALA SER VAL THR ARG SEQRES 8 A 327 VAL ASP GLY GLY GLU GLY VAL ASN TYR ILE ARG GLU ALA SEQRES 9 A 327 LEU LYS ARG GLY LYS HIS VAL VAL THR SER ASN LYS GLY SEQRES 10 A 327 PRO LEU VAL ALA GLU PHE HIS GLY LEU MSE SER LEU ALA SEQRES 11 A 327 GLU ARG ASN GLY VAL ARG LEU MSE TYR GLU ALA THR VAL SEQRES 12 A 327 GLY GLY ALA MSE PRO VAL VAL LYS LEU ALA LYS ARG TYR SEQRES 13 A 327 LEU ALA LEU CYS GLU ILE GLU SER VAL LYS GLY ILE PHE SEQRES 14 A 327 ASN GLY THR CYS ASN TYR ILE LEU SER ARG MSE GLU GLU SEQRES 15 A 327 GLU ARG LEU PRO TYR GLU HIS ILE LEU LYS GLU ALA GLN SEQRES 16 A 327 GLU LEU GLY TYR ALA GLU ALA ASP PRO SER TYR ASP VAL SEQRES 17 A 327 GLU GLY ILE ASP ALA ALA LEU LYS LEU VAL ILE ILE ALA SEQRES 18 A 327 ASN THR ILE GLY VAL LYS ALA SER TYR GLU ASP VAL GLU SEQRES 19 A 327 VAL THR GLY ILE THR GLN ILE THR PRO GLU ALA PHE GLN SEQRES 20 A 327 VAL ALA ALA GLU LYS GLY TYR THR ILE ARG LEU ILE ALA SEQRES 21 A 327 GLU VAL SER ARG GLU LYS LEU LYS VAL SER PRO ARG LEU SEQRES 22 A 327 VAL PRO PHE HIS HIS PRO LEU ALA ILE LYS GLY THR MSE SEQRES 23 A 327 ASN ALA ALA MSE PHE LYS THR ASP THR ALA GLY SER ILE SEQRES 24 A 327 PHE VAL ALA GLY ARG GLY ALA GLY LYS GLU GLU THR ALA SEQRES 25 A 327 SER ALA ILE LEU SER ASP LEU TYR GLU ILE TYR ALA GLY SEQRES 26 A 327 PRO ARG MODRES 3DO5 MSE A 1 MET SELENOMETHIONINE MODRES 3DO5 MSE A 58 MET SELENOMETHIONINE MODRES 3DO5 MSE A 64 MET SELENOMETHIONINE MODRES 3DO5 MSE A 126 MET SELENOMETHIONINE MODRES 3DO5 MSE A 137 MET SELENOMETHIONINE MODRES 3DO5 MSE A 146 MET SELENOMETHIONINE MODRES 3DO5 MSE A 179 MET SELENOMETHIONINE MODRES 3DO5 MSE A 285 MET SELENOMETHIONINE MODRES 3DO5 MSE A 289 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 58 8 HET MSE A 64 8 HET MSE A 126 8 HET MSE A 137 8 HET MSE A 146 8 HET MSE A 179 8 HET MSE A 285 8 HET MSE A 289 8 HET PO4 A 327 5 HET PO4 A 328 5 HET PEG A 329 7 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *76(H2 O) HELIX 1 1 GLY A 10 LYS A 23 1 14 HELIX 2 2 LYS A 23 GLY A 32 1 10 HELIX 3 3 SER A 51 GLY A 63 1 13 HELIX 4 4 LYS A 70 ALA A 78 1 9 HELIX 5 5 GLU A 95 LYS A 105 1 11 HELIX 6 6 LYS A 115 ASN A 132 1 18 HELIX 7 7 TYR A 138 VAL A 142 5 5 HELIX 8 8 VAL A 148 ARG A 154 1 7 HELIX 9 9 ASN A 169 ARG A 183 1 15 HELIX 10 10 PRO A 185 LEU A 196 1 12 HELIX 11 11 PRO A 203 GLU A 208 1 6 HELIX 12 12 GLY A 209 ILE A 223 1 15 HELIX 13 13 SER A 228 VAL A 232 5 5 HELIX 14 14 THR A 241 GLU A 250 1 10 HELIX 15 15 HIS A 277 ILE A 281 5 5 HELIX 16 16 GLY A 306 ALA A 323 1 18 SHEET 1 A 6 SER A 45 SER A 47 0 SHEET 2 A 6 PHE A 34 ALA A 40 -1 N VAL A 39 O ILE A 46 SHEET 3 A 6 ILE A 2 VAL A 7 1 N ILE A 4 O LYS A 35 SHEET 4 A 6 VAL A 82 GLU A 85 1 O ILE A 84 N ALA A 5 SHEET 5 A 6 HIS A 109 THR A 112 1 O VAL A 111 N LEU A 83 SHEET 6 A 6 LEU A 136 MSE A 137 1 O MSE A 137 N VAL A 110 SHEET 1 B 6 GLU A 233 VAL A 234 0 SHEET 2 B 6 LEU A 266 PRO A 274 1 O VAL A 268 N GLU A 233 SHEET 3 B 6 TYR A 253 VAL A 261 -1 N GLU A 260 O LYS A 267 SHEET 4 B 6 ILE A 161 ILE A 167 -1 N GLY A 166 O ALA A 259 SHEET 5 B 6 ASN A 286 THR A 292 -1 O MSE A 289 N LYS A 165 SHEET 6 B 6 SER A 297 GLY A 302 -1 O ILE A 298 N PHE A 290 LINK C MSE A 1 N ILE A 2 1555 1555 1.34 LINK C ARG A 57 N MSE A 58 1555 1555 1.32 LINK C MSE A 58 N LYS A 59 1555 1555 1.33 LINK C GLY A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N LEU A 65 1555 1555 1.33 LINK C LEU A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N SER A 127 1555 1555 1.34 LINK C LEU A 136 N MSE A 137 1555 1555 1.33 LINK C MSE A 137 N TYR A 138 1555 1555 1.33 LINK C ALA A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N PRO A 147 1555 1555 1.34 LINK C ARG A 178 N MSE A 179 1555 1555 1.33 LINK C MSE A 179 N GLU A 180 1555 1555 1.33 LINK C THR A 284 N MSE A 285 1555 1555 1.32 LINK C MSE A 285 N ASN A 286 1555 1555 1.33 LINK C ALA A 288 N MSE A 289 1555 1555 1.33 LINK C MSE A 289 N PHE A 290 1555 1555 1.34 SITE 1 AC1 4 ASP A 41 SER A 42 LYS A 59 HOH A 361 SITE 1 AC2 5 THR A 89 ASN A 114 LYS A 115 GLY A 116 SITE 2 AC2 5 TYR A 205 SITE 1 AC3 4 SER A 262 ARG A 263 GLU A 264 LYS A 265 CRYST1 119.107 120.818 57.886 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017275 0.00000 HETATM 1 N MSE A 1 52.780 12.131 9.830 1.00 64.27 N HETATM 2 CA MSE A 1 51.866 13.329 9.884 1.00 62.83 C HETATM 3 C MSE A 1 51.173 13.643 8.544 1.00 60.55 C HETATM 4 O MSE A 1 51.817 14.126 7.602 1.00 57.92 O HETATM 5 CB MSE A 1 52.673 14.551 10.319 1.00 66.08 C HETATM 6 CG MSE A 1 51.875 15.808 10.723 1.00 68.81 C HETATM 7 SE MSE A 1 50.702 15.464 12.236 0.75 84.58 SE HETATM 8 CE MSE A 1 51.122 17.040 13.324 1.00 62.48 C